Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 3.2e-130 468.4 234 100.0
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 1.6e-124 449.5 234 96.2
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 2.9e-118 428.7 233 92.3
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 3.0e-83 312.4 196 80.1
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 5.6e-82 308.1 196 79.1
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 3.1e-80 302.4 205 73.7
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 4.0e-80 302.0 196 76.0
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 1.7e-78 296.6 197 76.1
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 2.2e-78 296.2 230 67.8
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 2.2e-78 296.2 223 69.1
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 1.9e-77 293.1 193 73.6
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 2.4e-77 292.7 207 71.0
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 5.4e-77 291.6 223 65.9
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 7.1e-77 291.2 222 67.6
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 2.1e-76 289.7 194 72.7
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 7.9e-76 287.7 194 74.2
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 2.3e-75 286.2 194 72.7
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 5.1e-75 285.0 201 72.1
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 6.7e-75 284.6 199 72.4
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 1.9e-74 283.1 206 68.0
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 2.1e-73 279.6 207 71.0
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 6.2e-73 278.1 235 61.7
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 6.2e-73 278.1 199 70.9
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 8.1e-73 277.7 195 72.8
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.1e-72 277.3 195 69.2
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.1e-72 277.3 195 69.2
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 1.1e-72 277.3 207 67.1
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 1.8e-72 276.6 213 65.3
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 1.8e-72 276.6 232 63.8
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 2.6e-71 272.7 195 68.2
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 2.6e-71 272.7 257 60.3
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 5.8e-71 271.6 224 64.3
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 7.6e-71 271.2 190 73.7
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 9.9e-71 270.8 185 74.1
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 2.2e-70 269.6 192 69.3
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 2.9e-70 269.2 207 70.0
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 2.9e-70 269.2 228 60.5
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.8e-70 268.9 193 68.4
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 8.4e-70 267.7 194 69.1
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 8.4e-70 267.7 207 69.1
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 8.4e-70 267.7 187 72.7
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 1.1e-69 267.3 187 71.7
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 1.4e-69 266.9 211 64.0
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 1.9e-69 266.5 171 75.4
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 1.9e-69 266.5 214 64.5
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 2.4e-69 266.2 188 69.7
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 5.5e-69 265.0 231 62.8
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 5.5e-69 265.0 209 65.6
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 2.1e-68 263.1 229 62.0
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 2.1e-68 263.1 215 62.8
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 2.7e-68 262.7 210 66.2
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 3.5e-68 262.3 194 68.0
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 6.0e-68 261.5 186 70.4
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 7.9e-68 261.2 186 71.0
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 1.3e-67 260.4 219 62.6
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 3.0e-67 259.2 186 71.5
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 1.1e-66 257.3 216 62.0
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 2.5e-66 256.1 200 67.0
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 3.3e-66 255.8 214 62.1
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 5.6e-66 255.0 241 59.3
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 5.6e-66 255.0 195 66.2
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 1.3e-65 253.8 186 69.9
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 1.1e-64 250.8 186 68.8
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 1.8e-64 250.0 186 68.8
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 4.0e-64 248.8 196 66.3
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 9.0e-64 247.7 192 65.1
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 1.2e-63 247.3 212 61.3
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 2.6e-63 246.1 179 68.2
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 2.6e-63 246.1 169 72.2
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 4.5e-63 245.4 187 68.4
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 4.9e-62 241.9 185 68.1
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 1.9e-61 240.0 189 67.2
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 3.2e-61 239.2 188 67.0
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 3.2e-61 239.2 193 62.2
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 1.6e-60 236.9 155 72.3
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 2.1e-60 236.5 186 66.7
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 3.5e-60 235.7 197 60.4
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 3.5e-60 235.7 178 67.4
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 7.9e-60 234.6 225 56.9
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 7.9e-60 234.6 225 56.9
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 1.0e-59 234.2 175 68.0
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 1.5e-58 230.3 175 67.4
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 1.9e-58 229.9 236 55.1
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 1.6e-57 226.9 187 64.7
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 2.8e-57 226.1 201 61.2
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 5.3e-56 221.9 149 71.8
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 5.3e-56 221.9 184 60.3
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 9.0e-56 221.1 183 66.1
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 7.2e-53 211.5 136 74.3
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 7.9e-52 208.0 240 49.6
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 1.6e-49 200.3 136 80.9
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 1.4e-43 180.6 190 57.4
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 1.8e-40 170.2 152 58.6
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 4.2e-37 159.1 98 75.5
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 1.2e-36 157.5 98 73.5
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 3.0e-35 152.9 137 62.8
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 2.6e-34 149.8 166 50.6
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 2.0e-31 140.2 158 46.8
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 5.9e-31 138.7 117 69.2
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 1.7e-30 137.1 128 59.4
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 4.7e-28 129.0 157 44.6
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 1.7e-22 110.5 64 76.6
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 2.9e-22 109.8 62 80.6
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 3.8e-22 109.4 111 49.5
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 1.5e-18 97.4 128 48.4
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 5.7e-18 95.5 95 57.9
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 2.1e-12 77.0 120 44.2
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.0e-11 73.2 59 61.0
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 1.2e-10 71.2 60 61.7
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 2.6e-10 70.1 77 51.9
Cre17.g714900 Chlamydomonas reinhardtii HOM05D007115 ORTHO05D008923 1.7e-06 57.4 161 27.3
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 5.0e-06 55.8 83 37.3


User provided reference genes

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