Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 3.0e-201 704.9 346 100.0
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 1.5e-192 676.0 340 97.1
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 1.3e-188 662.9 341 95.9
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 2.9e-183 645.2 340 92.4
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 6.4e-151 537.7 340 73.8
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 4.2e-150 535.0 340 74.7
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 7.1e-150 534.3 340 73.2
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.3e-148 530.0 340 72.9
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 1.3e-148 530.0 340 73.8
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 1.5e-147 526.6 340 71.8
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 9.6e-147 523.9 340 71.2
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 2.8e-146 522.3 340 71.2
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.7e-146 521.9 340 71.2
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 4.8e-146 521.5 340 73.5
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 3.1e-145 518.8 340 72.6
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 4.0e-145 518.5 340 72.9
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 5.3e-145 518.1 340 71.5
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 6.9e-145 517.7 340 70.6
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 6.9e-145 517.7 340 72.1
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 6.9e-145 517.7 340 72.1
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.2e-144 516.9 340 73.2
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 1.5e-144 516.5 340 70.6
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 2.6e-144 515.8 340 71.8
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 3.4e-144 515.4 340 69.4
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 3.4e-144 515.4 340 71.2
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 4.5e-144 515.0 340 71.8
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 5.8e-144 514.6 341 71.3
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.9e-143 512.3 340 69.1
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 4.9e-143 511.5 340 71.8
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.1e-142 510.4 340 69.4
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 1.9e-142 509.6 341 71.6
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 2.5e-142 509.2 340 71.2
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 4.2e-142 508.4 340 71.2
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 7.1e-142 507.7 341 71.0
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 7.1e-142 507.7 340 68.2
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 2.1e-141 506.1 339 69.0
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.1e-141 506.1 340 69.7
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 6.0e-141 504.6 341 67.4
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 6.0e-141 504.6 341 70.1
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 7.9e-141 504.2 346 68.8
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 1.0e-140 503.8 339 71.1
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.8e-140 503.1 340 71.5
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 6.7e-140 501.1 340 69.4
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.1e-139 500.4 340 70.3
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.5e-139 500.0 350 67.7
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 1.9e-139 499.6 340 68.2
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 2.5e-139 499.2 340 71.2
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 3.3e-139 498.8 340 68.5
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 4.3e-139 498.4 340 68.8
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 7.4e-139 497.7 340 68.2
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 1.6e-138 496.5 340 67.9
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 3.7e-138 495.4 340 69.4
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 3.7e-138 495.4 340 67.9
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 8.2e-138 494.2 340 68.2
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.1e-137 493.8 321 71.0
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 1.4e-137 493.4 340 69.1
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 2.6e-136 489.2 340 68.2
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 3.4e-136 488.8 341 68.9
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 4.5e-136 488.4 340 67.9
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 4.5e-136 488.4 321 72.3
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 5.9e-136 488.0 340 67.9
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 1.0e-135 487.3 340 67.6
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 1.7e-135 486.5 340 68.5
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 2.2e-135 486.1 341 68.0
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.2e-135 486.1 344 68.3
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 5.0e-135 485.0 340 66.5
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 6.5e-135 484.6 340 65.9
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 8.5e-135 484.2 340 67.6
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 8.5e-135 484.2 340 67.6
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 1.1e-134 483.8 340 67.9
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.1e-134 483.8 340 68.2
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 3.2e-134 482.3 341 66.9
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 4.2e-134 481.9 340 67.4
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 9.3e-134 480.7 341 68.0
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 6.1e-133 478.0 340 66.2
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.4e-132 476.9 340 67.4
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 6.7e-132 474.6 340 66.5
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 8.8e-132 474.2 367 62.9
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 8.8e-132 474.2 367 62.9
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 1.5e-131 473.4 340 65.3
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 4.3e-131 471.9 343 66.2
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 7.4e-131 471.1 316 71.2
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 2.2e-130 469.5 344 65.7
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 1.8e-129 466.5 342 64.3
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 5.3e-129 464.9 342 63.5
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 2.2e-127 459.5 353 63.5
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 5.0e-127 458.4 353 63.5
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 7.2e-126 454.5 342 62.9
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 7.2e-126 454.5 232 94.0
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 1.0e-124 450.7 340 64.7
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 1.0e-124 450.7 340 63.2
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 2.3e-124 449.5 377 58.6
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 6.7e-124 448.0 340 63.2
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 6.7e-124 448.0 340 63.5
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 5.7e-123 444.9 340 62.6
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 7.4e-123 444.5 340 62.9
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 9.7e-123 444.1 340 63.8
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.3e-122 443.7 340 63.2
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.7e-122 443.4 340 62.6
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 3.7e-122 442.2 340 61.8
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 4.8e-122 441.8 340 62.6
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 8.2e-122 441.0 341 62.2
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 1.3e-119 433.7 344 62.5
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 1.7e-119 433.3 367 58.6
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 2.2e-119 433.0 340 61.5
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 5.5e-118 428.3 340 60.0
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 7.2e-118 427.9 340 60.6
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 7.2e-118 427.9 340 60.6
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 7.2e-118 427.9 340 60.6
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 1.6e-117 426.8 341 62.8
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.7e-117 426.0 340 62.4
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.0e-116 424.1 339 61.7
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.3e-116 422.9 373 58.7
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 7.4e-115 417.9 291 69.1
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 1.3e-114 417.2 291 67.0
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-114 417.2 341 62.2
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 8.2e-114 414.5 313 63.9
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 8.2e-114 414.5 342 58.5
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 7.2e-110 401.4 347 56.2
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 3.0e-108 396.0 266 70.3
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 4.4e-107 392.1 342 54.7
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 3.7e-106 389.0 347 53.3
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 5.9e-104 381.7 323 58.2
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.2e-102 375.6 352 55.1
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 2.0e-99 366.7 295 61.7
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 5.0e-95 352.1 293 57.0
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.7e-90 335.9 291 57.7
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 3.6e-85 319.3 295 52.5
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 4.7e-85 318.9 341 49.9
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 5.8e-83 312.0 340 50.3
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 1.3e-82 310.8 362 45.6
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 5.4e-81 305.4 344 45.1
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 8.6e-79 298.1 347 46.1
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.3e-66 257.7 325 45.2
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 6.0e-64 248.8 162 66.0
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.3e-63 247.7 324 44.1
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.8e-60 237.3 229 55.0
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 8.4e-58 228.4 303 42.9
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 1.4e-52 211.1 188 56.4
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 1.8e-52 210.7 339 40.7
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 1.8e-52 210.7 339 40.7
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.6e-51 206.8 230 49.1
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 6.2e-45 185.7 339 35.1
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.1e-44 184.9 106 80.2
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 3.9e-39 166.4 355 33.5
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.1e-36 156.8 119 61.3
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.3e-26 124.8 105 59.0
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 1.3e-23 114.8 372 26.3
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 6.3e-21 105.9 179 34.1
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 1.4e-20 104.8 71 73.2
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 3.8e-18 96.7 131 40.5
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 6.1e-16 89.4 227 26.9
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.3e-15 87.4 53 75.5
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 4.8e-13 79.7 75 54.7
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 1.4e-12 78.2 51 72.5
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 1.4e-12 78.2 51 72.5
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 1.7e-10 71.2 41 78.0


User provided reference genes

Program Settings