Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002337.2 Cucumis melo HOM05D008121 ORTHO05D009878 2.6e-87 325.5 178 100.0
CsaV3_1G009340 Cucumis sativus L. HOM05D008121 ORTHO05D009878 9.9e-71 270.4 182 85.2
ClCG03G003530 Citrullus lanatus HOM05D008121 ORTHO05D009878 3.2e-61 238.8 195 75.9
Sed0025515 Sechium edule HOM05D008121 ORTHO05D009878 5.1e-43 178.3 199 60.8
Potri.015G091100 Populus trichocarpa HOM05D008121 ORTHO05D009878 1.1e-18 97.4 179 44.7
RcHm_v2.0_Chr7g0190901 Rosa chinensis HOM05D008121 ORTHO05D009878 3.7e-17 92.4 188 45.2
FAN04G1418 Fragaria x ananassa HOM05D000290 ORTHO05D004630 1.1e-16 90.9 189 42.3
FAN08G2628 Fragaria x ananassa HOM05D000290 ORTHO05D004630 2.4e-16 89.7 153 45.8
Haze_07274 Corylus avellana HOM05D008121 ORTHO05D009878 3.1e-16 89.4 187 42.8
FvH4_5g07590 Fragaria vesca HOM05D008121 ORTHO05D009878 5.3e-16 88.6 198 41.4
Prupe.5G156300 Prunus persica HOM05D008121 ORTHO05D009878 5.3e-16 88.6 175 46.3
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 4.5e-15 85.5 190 41.6
CiPaw.12G036100 Carya illinoinensis HOM05D008121 ORTHO05D009878 2.9e-14 82.8 187 39.0
Thecc.03G123300 Theobroma cacao HOM05D008121 ORTHO05D009878 1.1e-13 80.9 150 44.0
TWI14G0571 Tripterygium wilfordii HOM05D008121 ORTHO05D009878 1.1e-13 80.9 186 38.7
Duzib205G1258 Durio zibethinus HOM05D008121 ORTHO05D009878 2.5e-13 79.7 179 43.0
Cfa018889 Carpinus fangiana HOM05D008121 ORTHO05D009878 4.2e-13 79.0 176 42.0
CiPaw.11G011700 Carya illinoinensis HOM05D008121 ORTHO05D009878 4.2e-13 79.0 191 39.3
MD06G1149100 Malus domestica HOM05D008121 ORTHO05D009878 2.1e-12 76.6 184 41.8
GSVIVG01007536001 Vitis vinifera HOM05D008121 ORTHO05D009878 1.4e-11 73.9 170 41.8
Atru.chr9.1017 Acer truncatum HOM05D008121 ORTHO05D009878 1.8e-11 73.6 186 39.2
CANSAT80G0868 Cannabis sativa HOM05D008121 ORTHO05D009878 2.3e-11 73.2 152 41.4
VMungo1215G2720 Vigna mungo HOM05D000290 ORTHO05D004630 2.3e-11 73.2 156 38.5
COL.COLO4_03517 Corchorus olitorius HOM05D008121 ORTHO05D009878 3.0e-11 72.8 136 43.4
Gohir.D09G246100 Gossypium hirsutum HOM05D008121 ORTHO05D009878 3.0e-11 72.8 180 38.9
Gorai.006G270600 Gossypium raimondii HOM05D008121 ORTHO05D009878 3.0e-11 72.8 180 38.9
Manes.14G055100 Manihot esculenta HOM05D008121 ORTHO05D009878 3.0e-11 72.8 193 36.3
Cpa.g.sc4.77 Carica papaya HOM05D008121 ORTHO05D009878 1.5e-10 70.5 139 41.0
Duzib084G1233 Durio zibethinus HOM05D008121 ORTHO05D009878 3.3e-10 69.3 177 38.4
Phvul.003G208400 Phaseolus vulgaris HOM05D008121 ORTHO05D009878 3.3e-10 69.3 159 38.4
Gohir.A09G245200 Gossypium hirsutum HOM05D008121 ORTHO05D009878 4.4e-10 68.9 178 36.5
Hma1.2p1_0014F.1_g009910 Hydrangea macrophylla HOM05D008121 ORTHO05D009878 7.4e-10 68.2 176 36.4
Lalb_Chr13g0297421 Lupinus albus HOM05D008121 ORTHO05D009878 1.3e-09 67.4 156 40.4
QL10p005006 Quercus lobata HOM05D008121 ORTHO05D009878 1.3e-09 67.4 197 38.6
TPR.G37567 Trifolium pratense HOM05D008121 ORTHO05D009878 1.3e-09 67.4 115 47.8
Lj4g0024363 Lotus japonicus HOM05D008121 ORTHO05D009878 4.8e-09 65.5 143 39.9
Dinv38465 Davidia involucrata HOM05D008121 ORTHO05D009878 6.3e-09 65.1 114 45.6
BcaB01g00807 Brassica carinata HOM05D011481 ORTHO05D009878 1.1e-08 64.3 155 34.2
Glyma.17G127300 Glycine max HOM05D008121 ORTHO05D009878 1.1e-08 64.3 180 36.7
arahy.Tifrunner.gnm1.ann1.YZZN9M Arachis hypogaea HOM05D008121 ORTHO05D009878 1.4e-08 63.9 171 39.2
Medtr4g104040 Medicago truncatula HOM05D008121 ORTHO05D009878 1.4e-08 63.9 164 37.8
Carub.0005s1467 Capsella rubella HOM05D011481 ORTHO05D009878 1.8e-08 63.5 139 40.3
Dinv02922 Davidia involucrata HOM05D008121 ORTHO05D009878 2.4e-08 63.2 114 45.6
Migut.I00480 Erythranthe guttata HOM05D008121 ORTHO05D009878 7.0e-08 61.6 149 38.3
Ciclev10023121m.g Citrus clementina HOM05D008121 ORTHO05D009878 9.1e-08 61.2 54 59.3
Ciclev10024026m.g Citrus clementina HOM05D008121 ORTHO05D009878 9.1e-08 61.2 54 59.3
Glyma.05G045100 Glycine max HOM05D008121 ORTHO05D009878 1.6e-07 60.5 173 37.0
Nn4g22451 Nelumbo nucifera HOM05D008121 ORTHO05D009878 1.6e-07 60.5 42 73.8
Oeu018378.1 Olea europaea HOM05D008121 ORTHO05D009878 1.6e-07 60.5 152 32.9
arahy.Tifrunner.gnm1.ann1.DV5N5R Arachis hypogaea HOM05D008121 ORTHO05D009878 2.6e-07 59.7 171 38.6
Psat4g064880 Pisum sativum HOM05D008121 ORTHO05D009878 3.5e-07 59.3 136 41.2
BcaC07g39334 Brassica carinata HOM05D011481 ORTHO05D009878 5.9e-07 58.5 153 34.6
C08p23500 Brassica napus HOM05D011481 ORTHO05D009878 5.9e-07 58.5 153 34.6
BolC8t49978H Brassica oleracea HOM05D011481 ORTHO05D009878 5.9e-07 58.5 153 34.6
THA.LOC104821506 Tarenaya hassleriana HOM05D011481 ORTHO05D009878 7.7e-07 58.2 136 35.3
Thhalv10011023m.g Eutrema salsugineum HOM05D011481 ORTHO05D009878 1.3e-06 57.4 83 45.8
PSO339G0123 Papaver somniferum HOM05D008121 ORTHO05D009878 1.3e-06 57.4 59 61.0
AL5G27920 Arabidopsis lyrata HOM05D011481 ORTHO05D009878 2.2e-06 56.6 140 37.1
A06p19190 Brassica napus HOM05D011481 ORTHO05D009878 2.9e-06 56.2 152 32.9
BraA06t25002Z Brassica rapa HOM05D011481 ORTHO05D009878 2.9e-06 56.2 152 32.9
CSS0015443 Camellia sinensis var. sinensis HOM05D008121 ORTHO05D009878 2.9e-06 56.2 182 31.9
Ca_05561_v3 Cicer arietinum L. HOM05D008121 ORTHO05D009878 2.9e-06 56.2 160 40.6
PGSC0003DMG400015199 Solanum tuberosum HOM05D008121 ORTHO05D009878 2.9e-06 56.2 181 33.1
Cc04_g10260 Coffea canephora HOM05D008121 ORTHO05D009878 3.8e-06 55.8 171 35.7
AT3G48490 Arabidopsis thaliana HOM05D011481 ORTHO05D009878 5.0e-06 55.5 139 35.3
Nitab4.5_0005327g0050 Nicotiana tabacum HOM05D008121 ORTHO05D009878 5.0e-06 55.5 149 36.2
CDE07G1849 Ceratophyllum demersum HOM05D058762 ORTHO05D038350 8.5e-06 54.7 69 42.0


User provided reference genes

Program Settings