Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 3.4e-178 628.2 324 100.0
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 2.1e-135 486.1 310 81.3
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 1.4e-120 436.8 309 73.8
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 1.0e-86 324.3 321 58.9
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 3.0e-81 306.2 307 56.7
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 5.6e-80 302.0 308 56.5
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 9.5e-80 301.2 306 53.9
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 4.7e-79 298.9 324 54.3
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.4e-78 297.4 311 54.3
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.8e-78 297.0 311 54.3
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 8.9e-78 294.7 314 56.7
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.0e-77 293.5 289 56.1
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 2.6e-77 293.1 312 51.9
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 2.6e-77 293.1 290 56.6
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.4e-77 292.7 290 56.2
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.4e-77 292.7 290 56.2
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 2.2e-76 290.0 272 58.1
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.4e-75 287.3 289 56.7
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.4e-75 287.3 313 53.7
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 2.4e-75 286.6 317 53.0
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 1.6e-74 283.9 307 53.4
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 7.8e-74 281.6 313 52.4
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 7.8e-74 281.6 297 54.5
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 7.8e-74 281.6 297 54.5
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 1.7e-73 280.4 311 53.1
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 8.6e-73 278.1 303 52.8
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 1.1e-72 277.7 319 52.0
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.1e-72 277.7 300 53.7
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 1.5e-72 277.3 298 54.7
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 7.3e-72 275.0 317 51.7
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 1.1e-70 271.2 280 55.7
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 1.1e-70 271.2 297 54.2
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 5.2e-70 268.9 303 53.5
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 8.9e-70 268.1 309 52.1
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 4.4e-69 265.8 273 53.1
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 5.8e-69 265.4 312 51.3
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 7.6e-69 265.0 268 55.2
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 4.9e-68 262.3 320 48.8
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 8.3e-68 261.5 288 51.7
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 1.1e-67 261.2 305 50.5
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 1.4e-67 260.8 196 66.8
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 2.4e-67 260.0 277 55.2
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 7.1e-67 258.5 323 48.9
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 7.1e-67 258.5 323 48.9
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 9.2e-67 258.1 241 57.7
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 3.5e-66 256.1 343 46.6
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 6.0e-66 255.4 245 58.0
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 7.8e-66 255.0 315 48.9
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 5.1e-65 252.3 313 48.9
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 5.1e-65 252.3 311 47.9
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 6.6e-65 251.9 310 48.1
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 9.6e-64 248.1 308 47.7
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 3.4e-61 239.6 239 55.6
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 1.3e-60 237.7 264 53.0
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 1.1e-59 234.6 236 54.2
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 2.4e-59 233.4 199 60.3
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 2.5e-56 223.4 222 51.8
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 4.8e-55 219.2 222 51.4
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 2.4e-51 206.8 193 57.0
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 3.3e-48 196.4 218 53.2
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 2.6e-45 186.8 226 49.6
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 3.4e-45 186.4 275 44.0
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 3.8e-44 183.0 277 45.5
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 4.9e-44 182.6 100 97.0
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 4.9e-44 182.6 227 47.6
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.1e-40 171.4 224 45.1
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 1.4e-38 164.5 170 51.8
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.3e-33 147.9 191 42.9
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 3.3e-32 143.3 275 37.1
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 2.4e-30 137.1 124 56.5
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.8e-29 132.5 188 38.3
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.9e-28 130.2 260 33.8
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.9e-28 130.2 260 33.8
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 1.2e-26 124.8 122 54.1
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.5e-24 117.9 198 37.9
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 2.8e-23 113.6 241 34.4
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.9e-21 105.9 268 29.9
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 1.7e-20 104.4 102 49.0
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 4.2e-19 99.8 327 30.6
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.6e-18 96.7 308 27.6
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 7.4e-16 89.0 103 49.5
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 1.7e-15 87.8 208 32.2
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 3.4e-13 80.1 58 72.4
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 5.5e-11 72.8 197 30.5
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 2.1e-10 70.9 197 29.9
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 2.7e-10 70.5 191 28.8
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 3.6e-10 70.1 70 54.3
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 7.9e-10 68.9 197 31.0
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 1.0e-09 68.6 195 29.7
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 1.0e-09 68.6 195 29.7
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 2.3e-09 67.4 229 28.8
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 3.0e-09 67.0 211 26.1
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 6.7e-09 65.9 144 31.9
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 6.7e-09 65.9 229 29.3
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 8.8e-09 65.5 229 27.5
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 8.8e-09 65.5 188 28.7
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 8.8e-09 65.5 225 28.0
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 1.1e-08 65.1 188 29.3
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 1.5e-08 64.7 229 28.4
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 1.5e-08 64.7 235 28.1
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 1.5e-08 64.7 183 29.5
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 2.6e-08 63.9 274 25.5
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.6e-08 63.9 204 26.5
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.6e-08 63.9 204 26.5
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 3.3e-08 63.5 229 27.5
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 3.3e-08 63.5 195 27.2
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 4.4e-08 63.2 205 28.8
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 5.7e-08 62.8 261 26.8
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 7.4e-08 62.4 192 29.7
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 1.3e-07 61.6 232 26.7
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 1.7e-07 61.2 224 24.6
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 1.7e-07 61.2 195 27.7
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 2.2e-07 60.8 257 26.1
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 2.2e-07 60.8 195 27.2
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 2.2e-07 60.8 220 25.5
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.2e-07 60.8 229 27.5
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 2.8e-07 60.5 233 26.2
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 3.7e-07 60.1 196 26.5
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 4.8e-07 59.7 195 26.7
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 4.8e-07 59.7 197 25.4
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 6.3e-07 59.3 224 25.4
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 6.3e-07 59.3 229 27.5
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 6.3e-07 59.3 220 27.3
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 6.3e-07 59.3 230 28.3
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 8.2e-07 58.9 229 27.9
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 1.1e-06 58.5 195 27.7
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 1.1e-06 58.5 230 26.1
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.1e-06 58.5 253 25.3
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.4e-06 58.2 234 26.9
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 1.8e-06 57.8 248 25.8
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 1.8e-06 57.8 229 27.1
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 1.8e-06 57.8 169 27.8
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 4.1e-06 56.6 228 25.9
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 5.3e-06 56.2 255 23.9
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 7.0e-06 55.8 177 29.9


User provided reference genes

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