Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 8.5e-302 1039.6 563 100.0
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 1.5e-277 959.1 516 96.7
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 1.2e-260 902.9 578 85.1
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 1.2e-242 843.2 558 85.3
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 1.1e-227 793.5 557 76.7
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.4e-227 793.1 530 80.6
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 1.7e-225 786.2 553 77.6
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.6e-223 779.6 548 75.7
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 1.6e-223 779.6 566 74.0
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 1.6e-223 779.6 526 75.7
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 7.9e-223 777.3 567 73.9
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 1.3e-222 776.5 530 75.7
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 1.9e-221 772.7 532 75.8
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.8e-220 768.8 553 74.3
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 6.2e-220 767.7 483 79.3
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.4e-219 765.8 565 74.0
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 4.0e-219 765.0 547 77.3
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 9.0e-219 763.8 527 78.0
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 9.0e-219 763.8 533 76.4
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 2.0e-218 762.7 539 74.2
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 1.7e-217 759.6 527 78.9
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 2.9e-217 758.8 526 75.1
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 2.9e-217 758.8 561 72.7
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 6.4e-217 757.7 525 74.7
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 1.2e-215 753.4 510 77.3
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 2.1e-215 752.7 530 74.3
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 6.0e-215 751.1 531 75.9
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 7.9e-215 750.7 526 76.4
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.0e-214 750.4 558 72.8
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 1.3e-214 750.0 532 72.9
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 1.8e-214 749.6 497 76.1
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 3.3e-213 745.3 439 83.4
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 3.3e-213 745.3 457 81.6
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 6.2e-212 741.1 527 74.4
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 1.8e-211 739.6 540 76.5
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 4.0e-211 738.4 531 77.0
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.2e-210 736.9 436 81.9
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 7.6e-210 734.2 532 74.4
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 8.4e-209 730.7 495 76.2
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 3.2e-208 728.8 525 74.3
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 4.2e-208 728.4 560 71.2
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 2.7e-207 725.7 522 73.0
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 4.6e-207 724.9 529 73.3
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 1.0e-206 723.8 525 74.7
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 3.9e-206 721.8 467 76.9
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 8.7e-206 720.7 482 75.1
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.1e-205 720.3 493 76.1
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 1.1e-205 720.3 527 72.5
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 4.3e-205 718.4 529 72.0
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 9.7e-205 717.2 500 74.6
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 2.2e-204 716.1 535 72.3
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 2.8e-204 715.7 481 77.1
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 4.8e-204 714.9 455 79.1
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 1.4e-203 713.4 543 74.0
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 2.4e-203 712.6 548 68.2
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 5.3e-203 711.4 489 75.7
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 6.9e-203 711.1 551 72.2
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 9.0e-203 710.7 513 74.7
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 1.2e-202 710.3 527 72.7
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 1.2e-202 710.3 577 71.2
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 1.2e-202 710.3 488 75.4
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 2.0e-202 709.5 507 74.0
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 2.0e-202 709.5 523 73.8
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 2.6e-202 709.1 455 77.8
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 1.0e-201 707.2 567 72.0
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 1.7e-201 706.4 501 73.1
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 2.9e-201 705.7 534 71.7
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 6.5e-201 704.5 548 72.6
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 2.5e-200 702.6 534 71.5
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 7.2e-200 701.0 455 78.0
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 1.8e-198 696.4 552 66.7
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 2.0e-197 693.0 540 73.0
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 2.5e-197 692.6 432 80.3
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 3.3e-197 692.2 558 70.1
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 9.7e-197 690.6 464 75.6
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 1.1e-195 687.2 461 74.0
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 2.4e-195 686.0 554 65.7
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 3.1e-195 685.6 448 75.9
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 6.9e-195 684.5 448 75.2
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 6.9e-195 684.5 448 75.2
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 1.2e-194 683.7 461 73.8
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 1.5e-194 683.3 421 79.1
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 5.9e-194 681.4 551 68.1
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.9e-193 679.1 421 78.9
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.9e-193 679.1 434 76.7
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 5.0e-193 678.3 434 76.7
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 4.2e-192 675.2 434 76.5
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 4.2e-192 675.2 437 76.4
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 4.7e-191 671.8 461 72.9
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 6.1e-191 671.4 432 76.6
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 3.0e-190 669.1 497 70.6
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 3.9e-190 668.7 438 77.6
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 1.7e-188 663.3 420 77.4
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 1.7e-188 663.3 458 73.8
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.0e-182 644.0 536 67.4
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.0e-182 644.0 517 69.2
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.7e-182 641.3 537 67.4
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 1.0e-177 627.5 533 64.7
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 8.5e-177 624.4 436 72.5
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 2.3e-174 616.3 440 71.1
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 2.2e-172 609.8 555 62.5
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 2.2e-172 609.8 522 62.1
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 1.1e-171 607.4 523 64.6
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 9.1e-171 604.4 558 63.6
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 2.2e-169 599.7 414 69.8
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 5.0e-169 598.6 357 82.9
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 4.2e-168 595.5 519 64.4
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 1.6e-167 593.6 558 61.3
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 8.0e-167 591.3 396 76.0
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 2.0e-165 586.6 543 62.4
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 1.7e-164 583.6 543 62.2
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 2.3e-161 573.2 451 71.8
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 3.8e-161 572.4 422 71.3
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 6.6e-161 571.6 473 64.3
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.4e-158 563.9 394 72.3
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 1.2e-157 560.8 511 60.1
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.7e-156 557.0 516 60.3
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 5.4e-155 552.0 425 67.8
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 3.1e-150 536.2 517 56.3
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 9.8e-149 531.2 418 66.7
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 4.6e-146 522.3 421 62.5
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.6e-143 512.7 526 54.9
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.4e-134 484.2 388 65.7
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 1.9e-131 473.8 521 51.6
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 3.9e-129 466.1 351 66.1
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 6.6e-129 465.3 446 58.1
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 7.3e-128 461.8 500 54.6
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 9.6e-128 461.5 424 56.1
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 1.1e-126 458.0 448 57.8
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 1.4e-126 457.6 447 53.7
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 1.9e-123 447.2 570 51.6
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 3.5e-122 443.0 494 52.6
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 3.0e-121 439.9 463 51.4
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 1.5e-120 437.6 716 42.2
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 1.2e-117 427.9 463 54.2
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 1.7e-116 424.1 511 50.5
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 3.6e-111 406.4 405 52.6
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.1e-104 384.8 354 56.5
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 2.8e-103 380.2 540 44.8
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 4.8e-103 379.4 456 49.6
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 7.1e-99 365.5 283 67.5
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 9.3e-99 365.2 310 60.6
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 2.5e-96 357.1 504 45.0
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 3.3e-96 356.7 258 72.9
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 4.2e-91 339.7 295 57.3
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 1.1e-88 331.6 436 45.0
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 3.2e-83 313.5 376 43.9
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 5.1e-81 306.2 293 60.1
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 6.7e-81 305.8 263 69.2
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.4e-75 288.1 332 47.6
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 1.7e-68 264.6 357 46.2
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 6.5e-68 262.7 155 82.6
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 3.1e-54 217.2 306 47.1
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 4.9e-39 166.8 98 75.5
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 7.5e-32 142.9 295 34.9
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 2.9e-31 141.0 100 67.0
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 6.6e-28 129.8 130 59.2
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 1.5e-27 128.6 106 64.2
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 1.8e-25 121.7 93 72.0
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.6e-21 108.6 70 71.4
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 2.1e-21 108.2 122 50.0
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 6.0e-21 106.7 140 43.6
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 7.8e-21 106.3 149 46.3
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 6.6e-20 103.2 157 43.3
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 9.5e-19 99.4 215 34.9
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 1.2e-18 99.0 267 30.3
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 4.7e-18 97.1 149 43.0
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 1.1e-17 95.9 45 95.6
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 1.5e-16 92.0 70 62.9
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 2.2e-15 88.2 46 89.1
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 4.6e-13 80.5 75 49.3
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 5.1e-12 77.0 127 40.9
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 3.3e-11 74.3 96 41.7
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 9.6e-11 72.8 77 49.4
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 4.7e-10 70.5 97 42.3
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 6.2e-10 70.1 51 62.7
FAN13G0915 Fragaria x ananassa HOM05D003858 ORTHO05D204259 1.4e-09 68.9 132 34.8
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 4.4e-08 63.9 199 24.6
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 7.6e-08 63.2 210 26.2
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 6.4e-07 60.1 29 93.1
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.1e-06 59.3 203 22.7


User provided reference genes

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