Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002180.2 Cucumis melo HOM05D006168 ORTHO05D007602 8.0e-77 290.4 154 100.0
CsaV3_1G007610 Cucumis sativus L. HOM05D006168 ORTHO05D007602 8.5e-71 270.4 154 93.5
ClCG01G014720 Citrullus lanatus HOM05D006168 ORTHO05D007602 1.1e-70 270.0 153 92.8
Sed0019180 Sechium edule HOM05D006168 ORTHO05D007602 7.0e-65 250.8 153 86.3
Gohir.A05G294800 Gossypium hirsutum HOM05D006168 ORTHO05D007602 3.2e-49 198.7 147 73.5
CiPaw.16G075600 Carya illinoinensis HOM05D006168 ORTHO05D007602 6.0e-48 194.5 153 71.9
Gohir.D05G295400 Gossypium hirsutum HOM05D006168 ORTHO05D007602 6.0e-48 194.5 147 72.1
Nn3g18550 Nelumbo nucifera HOM05D006168 ORTHO05D007602 6.0e-48 194.5 151 71.5
Duzib128G1786 Durio zibethinus HOM05D006168 ORTHO05D007602 3.0e-47 192.2 147 72.8
Dinv03501 Davidia involucrata HOM05D006168 ORTHO05D007602 1.5e-46 189.9 156 69.9
Dinv03506 Davidia involucrata HOM05D006168 ORTHO05D007602 1.5e-46 189.9 156 69.9
Prupe.5G244900 Prunus persica HOM05D006168 ORTHO05D007602 1.5e-46 189.9 155 70.3
GSVIVG01024249001 Vitis vinifera HOM05D006168 ORTHO05D007602 1.9e-46 189.5 146 70.5
Duzib114G0883 Durio zibethinus HOM05D006168 ORTHO05D007602 3.3e-46 188.7 155 67.7
Ah.14g084700 Amaranthus hybridus HOM05D006168 ORTHO05D007602 9.5e-46 187.2 148 68.9
QL10p033704 Quercus lobata HOM05D006168 ORTHO05D007602 2.1e-45 186.0 144 68.8
Thecc.10G078900 Theobroma cacao HOM05D006168 ORTHO05D007602 2.1e-45 186.0 152 69.7
Cfa017805 Carpinus fangiana HOM05D006168 ORTHO05D007602 2.8e-45 185.7 135 72.6
Gorai.009G312100 Gossypium raimondii HOM05D006168 ORTHO05D007602 2.8e-45 185.7 140 72.9
Hund08905 Selenicereus undatus HOM05D006168 ORTHO05D007602 3.6e-45 185.3 151 66.9
COL.COLO4_12167 Corchorus olitorius HOM05D006168 ORTHO05D007602 6.2e-45 184.5 150 68.7
Lsat_1_v5_gn_2_6441 Lactuca sativa HOM05D006168 ORTHO05D007602 6.2e-45 184.5 152 65.8
ECA238G2000 Erigeron canadensis HOM05D006168 ORTHO05D007602 1.8e-44 183.0 153 65.4
EL10Ac8g18962 Beta vulgaris HOM05D006168 ORTHO05D007602 2.3e-44 182.6 147 66.7
Sabra04G0045100 Salix brachista HOM05D006168 ORTHO05D007602 3.1e-44 182.2 152 69.1
TWI81G0790 Tripterygium wilfordii HOM05D006168 ORTHO05D007602 4.0e-44 181.8 154 68.8
Potri.004G067300 Populus trichocarpa HOM05D006168 ORTHO05D007602 6.8e-44 181.0 143 69.9
Atru.chr9.17 Acer truncatum HOM05D006168 ORTHO05D007602 1.2e-43 180.3 158 64.6
CDE04G1298 Ceratophyllum demersum HOM05D006168 ORTHO05D007602 2.0e-43 179.5 153 67.3
Lj5g0014337 Lotus japonicus HOM05D006168 ORTHO05D007602 2.6e-43 179.1 154 64.9
Manes.02G226600 Manihot esculenta HOM05D006168 ORTHO05D007602 2.6e-43 179.1 146 67.8
HanXRQChr14g0428251 Helianthus annuus HOM05D006168 ORTHO05D007602 4.4e-43 178.3 154 64.9
VMungo0720G1915 Vigna mungo HOM05D006168 ORTHO05D007602 7.5e-43 177.6 156 66.7
AUR62028326 Chenopodium quinoa HOM05D006168 ORTHO05D007602 9.8e-43 177.2 151 66.2
TAR629G1867 Trochodendron aralioides HOM05D006168 ORTHO05D007602 1.3e-42 176.8 155 64.5
CANSAT35G1332 Cannabis sativa HOM05D006168 ORTHO05D007602 2.2e-42 176.0 147 67.3
PGR083G1429 Punica granatum HOM05D006168 ORTHO05D007602 2.2e-42 176.0 158 63.9
Aqoxy2G03978 Aquilegia oxysepala HOM05D006168 ORTHO05D007602 2.9e-42 175.6 144 66.7
RcHm_v2.0_Chr7g0176961 Rosa chinensis HOM05D006168 ORTHO05D007602 3.7e-42 175.3 160 66.2
Eucgr.H00657 Eucalyptus grandis HOM05D006168 ORTHO05D007602 4.9e-42 174.9 150 64.7
CDE08G0644 Ceratophyllum demersum HOM05D006168 ORTHO05D007602 1.4e-41 173.3 155 65.2
BolC3t16418H Brassica oleracea HOM05D006168 ORTHO05D007602 1.9e-41 172.9 151 66.2
DCAR_011406 Daucus carota HOM05D006168 ORTHO05D007602 1.9e-41 172.9 137 70.1
MD06G1240400 Malus domestica HOM05D006168 ORTHO05D007602 1.9e-41 172.9 156 64.7
BraA03t12572Z Brassica rapa HOM05D006168 ORTHO05D007602 3.2e-41 172.2 150 65.3
MBI06_g12548_MAGBIO Magnolia biondii HOM05D006168 ORTHO05D007602 3.2e-41 172.2 153 65.4
AUR62025335 Chenopodium quinoa HOM05D006168 ORTHO05D007602 4.1e-41 171.8 135 68.9
FAN04G0186 Fragaria x ananassa HOM05D006168 ORTHO05D007602 4.1e-41 171.8 162 65.4
ECA238G0114 Erigeron canadensis HOM05D006168 ORTHO05D007602 7.1e-41 171.0 148 62.8
ECA238G1897 Erigeron canadensis HOM05D006168 ORTHO05D007602 7.1e-41 171.0 148 62.8
Phvul.L006301 Phaseolus vulgaris HOM05D006168 ORTHO05D007602 7.1e-41 171.0 156 65.4
Rhsim12G0137000 Rhododendron simsii HOM05D006168 ORTHO05D007602 7.1e-41 171.0 135 68.9
MD14G1246600 Malus domestica HOM05D006168 ORTHO05D007602 9.2e-41 170.6 155 65.2
Glyma.20G216400 Glycine max HOM05D006168 ORTHO05D007602 1.2e-40 170.2 158 65.2
FAN18G0639 Fragaria x ananassa HOM05D006168 ORTHO05D007602 4.6e-40 168.3 163 65.6
Ca_09928_v3 Cicer arietinum L. HOM05D006168 ORTHO05D007602 7.8e-40 167.5 162 63.0
Glyma.10G174000 Glycine max HOM05D006168 ORTHO05D007602 7.8e-40 167.5 157 63.7
ECA238G2968 Erigeron canadensis HOM05D000092 ORTHO05D000042 1.0e-39 167.2 145 62.8
FvH4_5g18550 Fragaria vesca HOM05D006168 ORTHO05D007602 1.0e-39 167.2 163 65.0
Medtr1g077570 Medicago truncatula HOM05D006168 ORTHO05D007602 1.3e-39 166.8 163 60.7
Peaxi162Scf00643g00537 Petunia axillaris HOM05D006168 ORTHO05D007602 3.0e-39 165.6 150 62.0
Solyc06g072170.2 Solanum lycopersicum HOM05D006168 ORTHO05D007602 3.9e-39 165.2 153 60.1
Sopen06g028470 Solanum pennellii HOM05D006168 ORTHO05D007602 3.9e-39 165.2 153 60.1
PGSC0003DMG400027059 Solanum tuberosum HOM05D006168 ORTHO05D007602 6.6e-39 164.5 153 60.1
CARHR079400 Cardamine hirsuta HOM05D006168 ORTHO05D007602 1.1e-38 163.7 148 62.8
Aa31LG5G15370 Aethionema arabicum HOM05D006168 ORTHO05D007602 1.9e-38 162.9 150 62.7
ATR0124G011 Amborella trichopoda HOM05D006168 ORTHO05D007602 3.3e-38 162.2 144 61.8
Migut.D02066 Erythranthe guttata HOM05D006168 ORTHO05D007602 1.2e-37 160.2 164 58.5
Lalb_Chr21g0311691 Lupinus albus HOM05D006168 ORTHO05D007602 1.2e-37 160.2 156 60.9
Sp3g03900 Schrenkiella parvula HOM05D006168 ORTHO05D007602 1.6e-37 159.8 148 63.5
CSS0046866 Camellia sinensis var. sinensis HOM05D006168 ORTHO05D007602 2.1e-37 159.5 96 84.4
Psat6g054520 Pisum sativum HOM05D006168 ORTHO05D007602 2.1e-37 159.5 160 60.6
MSTRG.4316 Avicennia marina HOM05D006168 ORTHO05D007602 3.6e-37 158.7 164 57.9
AL3G15460 Arabidopsis lyrata HOM05D006168 ORTHO05D007602 4.7e-37 158.3 148 63.5
FAN08G3581 Fragaria x ananassa HOM05D006168 ORTHO05D007602 6.2e-37 157.9 162 61.7
Cc02_g29290 Coffea canephora HOM05D006168 ORTHO05D007602 1.1e-36 157.1 171 55.0
Thhalv10021722m.g Eutrema salsugineum HOM05D006168 ORTHO05D007602 2.3e-36 156.0 150 61.3
PSO063G5228 Papaver somniferum HOM05D006168 ORTHO05D007602 4.0e-36 155.2 158 58.9
vmacro16399 Vaccinium macrocarpon HOM05D006168 ORTHO05D007602 5.2e-36 154.8 167 55.7
unitig_21.g20432 Utricularia gibba HOM05D006168 ORTHO05D007602 1.2e-35 153.7 156 60.3
AT3G05070 Arabidopsis thaliana HOM05D006168 ORTHO05D007602 1.5e-35 153.3 148 62.2
Ciclev10022597m.g Citrus clementina HOM05D006168 ORTHO05D007602 4.4e-35 151.8 158 57.6
Carub.0003s0432 Capsella rubella HOM05D006168 ORTHO05D007602 5.8e-35 151.4 148 60.8
Sed0015845 Sechium edule HOM05D006168 ORTHO05D007602 7.6e-35 151.0 153 60.1
HPP92_020852 Vanilla planifolia HOM05D006168 ORTHO05D007602 1.3e-34 150.2 147 61.9
SGA_v2.0_scaffold387G50509 Striga asiatica HOM05D006168 ORTHO05D007602 2.9e-34 149.1 160 53.1
C05p62160 Brassica napus HOM05D006168 ORTHO05D007602 8.4e-34 147.5 150 59.3
BolC5t34874H Brassica oleracea HOM05D006168 ORTHO05D007602 8.4e-34 147.5 150 59.3
A05p42500 Brassica napus HOM05D006168 ORTHO05D007602 2.4e-33 146.0 150 58.0
BraA05t23002Z Brassica rapa HOM05D006168 ORTHO05D007602 2.4e-33 146.0 150 58.0
THA.LOC104818656 Tarenaya hassleriana HOM05D006168 ORTHO05D007602 7.1e-33 144.4 154 58.4
Haze_18408 Corylus avellana HOM05D006168 ORTHO05D007602 9.2e-33 144.1 82 85.4
CAN.G65.65 Capsicum annuum HOM05D006168 ORTHO05D007602 6.0e-32 141.4 101 68.3
SEGI_05677 Sequoiadendron giganteum HOM05D006168 ORTHO05D007602 8.6e-31 137.5 148 54.1
BcaC05g29992 Brassica carinata HOM05D006168 ORTHO05D007602 2.1e-29 132.9 150 56.0
RcHm_v2.0_Chr5g0006211 Rosa chinensis HOM05D006168 ORTHO05D007602 1.1e-28 130.6 148 52.7
Oeu034422.1 Olea europaea HOM05D006168 ORTHO05D007602 1.4e-28 130.2 136 58.1
AagrBONN_evm.TU.Sc2ySwM_368.389 Anthoceros agrestis HOM05D006168 ORTHO05D007602 3.1e-28 129.0 134 56.7
arahy.Tifrunner.gnm1.ann1.52MA05 Arachis hypogaea HOM05D006168 ORTHO05D007602 4.4e-27 125.2 143 54.5
Pp3c19_22150 Physcomitrium patens HOM05D006168 ORTHO05D007602 5.8e-27 124.8 143 53.1
Os06g0730800 Oryza sativa ssp. japonica HOM05D006168 ORTHO05D007602 9.9e-27 124.0 175 46.3
SalBow8G4549 Salvia bowleyana HOM05D006168 ORTHO05D007602 9.9e-27 124.0 152 55.9
Zm00001eb228960 Zea mays HOM05D006168 ORTHO05D007602 6.4e-26 121.3 183 45.9
BcaB04g19282 Brassica carinata HOM05D006168 ORTHO05D007602 6.0e-24 114.8 86 69.8
Nitab4.5_0002771g0020 Nicotiana tabacum HOM05D006168 ORTHO05D007602 1.0e-23 114.0 84 69.0
Nitab4.5_0000477g0160 Nicotiana tabacum HOM05D006168 ORTHO05D007602 1.7e-23 113.2 106 60.4
FvH4_3g03920 Fragaria vesca HOM05D006168 ORTHO05D007602 5.1e-23 111.7 148 49.3
FAN16G2203 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.1e-22 110.5 153 50.3
FAN25G2877 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.1e-22 110.5 153 49.0
FAN11G1802 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.5e-22 110.2 146 49.3
FAN21G2556 Fragaria x ananassa HOM05D006168 ORTHO05D007602 7.3e-22 107.8 152 47.4
Potri.017G154100 Populus trichocarpa HOM05D006168 ORTHO05D007602 1.6e-21 106.7 88 67.0
Mapoly0133s0024 Marchantia polymorpha HOM05D006168 ORTHO05D007602 2.1e-21 106.3 136 50.0
Sc15g0000010 Simmondsia chinensis HOM05D006168 ORTHO05D007602 1.1e-20 104.0 100 56.0
FAN13G0455 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.5e-19 100.1 105 56.2
SMO147G0110 Selaginella moellendorffii HOM05D006168 ORTHO05D007602 1.5e-19 100.1 131 48.9
TPR.G8871 Trifolium pratense HOM05D006168 ORTHO05D007602 1.7e-18 96.7 58 84.5
TPR.G35595 Trifolium pratense HOM05D006168 ORTHO05D007602 9.3e-17 90.9 105 55.2
BcaC01g04336 Brassica carinata HOM05D006168 ORTHO05D007602 1.2e-16 90.5 112 53.6
CBR_g57849 Chara braunii HOM05D006168 ORTHO05D007602 1.6e-16 90.1 137 43.1
arahy.Tifrunner.gnm1.ann1.S1M3RU Arachis hypogaea HOM05D006168 ORTHO05D007602 2.3e-15 86.3 101 52.5
Cre12.g518300 Chlamydomonas reinhardtii HOM05D006168 ORTHO05D007602 3.9e-15 85.5 137 43.1
MCO12G027 Micromonas commoda HOM05D006168 ORTHO05D007602 1.4e-09 67.0 136 37.5
A03p33970 Brassica napus HOM05D006168 ORTHO05D007602 1.6e-08 63.5 74 54.1
C03p41350 Brassica napus HOM05D006168 ORTHO05D007602 1.3e-07 60.5 110 41.8


User provided reference genes

Program Settings