Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002126.2 Cucumis melo HOM05D006054 ORTHO05D007951 4.5e-119 431.4 238 100.0
CsaV3_1G007080 Cucumis sativus L. HOM05D006054 ORTHO05D007951 1.0e-110 403.7 253 89.3
ClCG04G010700 Citrullus lanatus HOM05D006054 ORTHO05D007951 4.5e-103 378.3 253 85.8
Sed0027930 Sechium edule HOM05D006054 ORTHO05D007951 1.5e-95 353.2 253 80.6
Potri.012G048300 Populus trichocarpa HOM05D006054 ORTHO05D007951 2.5e-85 319.3 260 69.2
Cpa.g.sc3.410 Carica papaya HOM05D006054 ORTHO05D007951 4.2e-85 318.5 255 69.8
Manes.14G170200 Manihot esculenta HOM05D006054 ORTHO05D007951 4.7e-84 315.1 255 70.2
Thecc.03G053300 Theobroma cacao HOM05D006054 ORTHO05D007951 2.3e-83 312.8 262 67.9
CiPaw.15G140700 Carya illinoinensis HOM05D006054 ORTHO05D007951 1.5e-82 310.1 258 67.4
TWI60G0269 Tripterygium wilfordii HOM05D006054 ORTHO05D007951 7.5e-82 307.8 265 70.6
Actinidia35123 Actinidia chinensis HOM05D006054 ORTHO05D007951 9.7e-82 307.4 263 65.0
QL10p028192 Quercus lobata HOM05D006054 ORTHO05D007951 2.8e-81 305.8 261 67.8
GSVIVG01008414001 Vitis vinifera HOM05D006054 ORTHO05D007951 4.8e-81 305.1 260 69.2
Nitab4.5_0004028g0050 Nicotiana tabacum HOM05D000239 ORTHO05D000484 6.3e-81 304.7 242 66.5
PGSC0003DMG400005734 Solanum tuberosum HOM05D006054 ORTHO05D007951 1.1e-80 303.9 263 66.9
CAN.G1129.15 Capsicum annuum HOM05D006054 ORTHO05D007951 1.4e-80 303.5 257 66.5
RcHm_v2.0_Chr7g0178601 Rosa chinensis HOM05D006054 ORTHO05D007951 1.8e-80 303.1 255 64.3
Nitab4.5_0008639g0010 Nicotiana tabacum HOM05D006054 ORTHO05D007951 2.4e-80 302.8 262 63.0
Sopen03g038040 Solanum pennellii HOM05D006054 ORTHO05D007951 3.1e-80 302.4 262 66.4
Lj5A155T99 Lonicera japonica HOM05D006054 ORTHO05D007951 1.2e-79 300.4 261 62.1
DCAR_014010 Daucus carota HOM05D006054 ORTHO05D007951 2.7e-79 299.3 253 66.0
FAN04G0820 Fragaria x ananassa HOM05D006054 ORTHO05D007951 2.7e-79 299.3 255 63.5
Lj5A156T88 Lonicera japonica HOM05D006054 ORTHO05D007951 2.7e-79 299.3 261 62.1
Sabra12G0033800 Salix brachista HOM05D006054 ORTHO05D007951 3.5e-79 298.9 260 67.7
Eucgr.K02266 Eucalyptus grandis HOM05D006054 ORTHO05D007951 1.0e-78 297.4 254 67.3
CSS0009173 Camellia sinensis var. sinensis HOM05D006054 ORTHO05D007951 3.8e-78 295.4 260 64.6
Solyc03g119150.4 Solanum lycopersicum HOM05D006054 ORTHO05D007951 3.8e-78 295.4 262 67.6
FAN18G0499 Fragaria x ananassa HOM05D006054 ORTHO05D007951 5.0e-78 295.0 255 67.1
FAN08G1083 Fragaria x ananassa HOM05D006054 ORTHO05D007951 6.5e-78 294.7 255 67.8
Hma1.2p1_0669F.1_g200190 Hydrangea macrophylla HOM05D006054 ORTHO05D007951 8.5e-78 294.3 270 61.1
Lalb_Chr16g0387101 Lupinus albus HOM05D006054 ORTHO05D007951 1.9e-77 293.1 254 61.8
MBI12_g30399_MAGBIO Magnolia biondii HOM05D006054 ORTHO05D007951 2.5e-77 292.7 252 62.3
CSS0029176 Camellia sinensis var. sinensis HOM05D006054 ORTHO05D007951 3.2e-77 292.4 260 65.0
PGR044G0876 Punica granatum HOM05D006054 ORTHO05D007951 5.5e-77 291.6 258 65.1
Nn4g24192 Nelumbo nucifera HOM05D006054 ORTHO05D007951 7.2e-77 291.2 258 66.7
Aqoxy3G04019 Aquilegia oxysepala HOM05D006054 ORTHO05D007951 9.4e-77 290.8 262 61.1
MSTRG.4570 Avicennia marina HOM05D006054 ORTHO05D007951 1.2e-76 290.4 259 61.8
PSO478G4576 Papaver somniferum HOM05D006054 ORTHO05D007951 1.2e-76 290.4 266 59.4
Prupe.5G231900 Prunus persica HOM05D006054 ORTHO05D007951 1.2e-76 290.4 273 60.1
QL10p028307 Quercus lobata HOM05D006054 ORTHO05D007951 1.6e-76 290.0 261 66.3
Cfa019678 Carpinus fangiana HOM05D006054 ORTHO05D007951 3.6e-76 288.9 255 67.5
Cc04_g06390 Coffea canephora HOM05D006054 ORTHO05D007951 3.6e-76 288.9 259 61.4
Oeu026288.1 Olea europaea HOM05D006054 ORTHO05D007951 1.0e-75 287.3 258 64.0
vmacro16417 Vaccinium macrocarpon HOM05D006054 ORTHO05D007951 1.4e-75 287.0 260 64.2
TAR371G0894 Trochodendron aralioides HOM05D006054 ORTHO05D007951 1.8e-75 286.6 260 66.9
MD06G1230600 Malus domestica HOM05D006054 ORTHO05D007951 2.3e-75 286.2 267 62.2
Nitab4.5_0001986g0060 Nicotiana tabacum HOM05D000239 ORTHO05D000484 2.3e-75 286.2 268 61.6
PSO017G1288 Papaver somniferum HOM05D006054 ORTHO05D007951 3.0e-75 285.8 265 59.6
VMungo0251G3760 Vigna mungo HOM05D006054 ORTHO05D007951 3.0e-75 285.8 253 64.0
THA.LOC104812166 Tarenaya hassleriana HOM05D006054 ORTHO05D007951 8.8e-75 284.3 259 67.2
Phvul.002G328804 Phaseolus vulgaris HOM05D006054 ORTHO05D007951 2.0e-74 283.1 266 58.3
Ciclev10009243m.g Citrus clementina HOM05D006054 ORTHO05D007951 2.6e-74 282.7 266 60.9
Gorai.004G202900 Gossypium raimondii HOM05D006054 ORTHO05D007951 3.4e-74 282.3 253 64.8
Gohir.D08G192800 Gossypium hirsutum HOM05D006054 ORTHO05D007951 4.4e-74 282.0 253 64.8
COL.COLO4_16137 Corchorus olitorius HOM05D006054 ORTHO05D007951 5.7e-74 281.6 257 65.8
Gohir.A08G174100 Gossypium hirsutum HOM05D006054 ORTHO05D007951 5.7e-74 281.6 253 64.4
Ca_17203_v3 Cicer arietinum L. HOM05D006054 ORTHO05D007951 8.3e-73 277.7 259 59.5
Psat7g002000 Pisum sativum HOM05D006054 ORTHO05D007951 8.3e-73 277.7 259 63.3
Glyma.05G245200 Glycine max HOM05D006054 ORTHO05D007951 5.4e-72 275.0 261 60.2
MD14G1235200 Malus domestica HOM05D006054 ORTHO05D007951 7.0e-72 274.6 260 63.1
BraA09t41376Z Brassica rapa HOM05D006054 ORTHO05D007951 9.1e-72 274.2 261 60.2
Duzib084G0786 Durio zibethinus HOM05D006054 ORTHO05D007951 1.2e-71 273.9 188 73.4
Medtr8g107010 Medicago truncatula HOM05D006054 ORTHO05D007951 1.6e-71 273.5 261 57.5
Lj4g0021104 Lotus japonicus HOM05D006054 ORTHO05D007951 2.7e-71 272.7 259 60.2
Migut.I00447 Erythranthe guttata HOM05D006054 ORTHO05D007951 7.7e-71 271.2 270 63.7
C08p43510 Brassica napus HOM05D006054 ORTHO05D007951 1.0e-70 270.8 261 60.5
Glyma.08G052800 Glycine max HOM05D006054 ORTHO05D007951 1.0e-70 270.8 258 59.7
A09p60070 Brassica napus HOM05D006054 ORTHO05D007951 1.3e-70 270.4 261 58.6
Lsat_1_v5_gn_8_144020 Lactuca sativa HOM05D006054 ORTHO05D007951 3.3e-69 265.8 185 73.5
TPR.G1413 Trifolium pratense HOM05D006054 ORTHO05D007951 4.2e-69 265.4 270 55.9
Aa31LG7G2900 Aethionema arabicum HOM05D006054 ORTHO05D007951 5.5e-69 265.0 259 64.1
ECA233G1701 Erigeron canadensis HOM05D006054 ORTHO05D007951 5.5e-69 265.0 249 61.0
Peaxi162Scf00683g00146 Petunia axillaris HOM05D006054 ORTHO05D007951 2.1e-68 263.1 249 65.1
AT1G18170 Arabidopsis thaliana HOM05D006054 ORTHO05D007951 3.6e-68 262.3 188 69.7
Carub.0001s1781 Capsella rubella HOM05D006054 ORTHO05D007951 1.0e-67 260.8 192 66.1
Dinv18255 Davidia involucrata HOM05D006054 ORTHO05D007951 1.0e-67 260.8 231 65.4
AL1G30540 Arabidopsis lyrata HOM05D006054 ORTHO05D007951 1.4e-67 260.4 185 69.7
BolC8t51897H Brassica oleracea HOM05D006054 ORTHO05D007951 2.3e-67 259.6 259 61.0
AUR62043302 Chenopodium quinoa HOM05D006054 ORTHO05D007951 3.0e-67 259.2 293 53.6
HanXRQChr08g0227401 Helianthus annuus HOM05D006054 ORTHO05D007951 3.0e-67 259.2 208 66.3
Thhalv10008547m.g Eutrema salsugineum HOM05D006054 ORTHO05D007951 4.0e-67 258.8 261 60.5
THA.LOC104813923 Tarenaya hassleriana HOM05D006054 ORTHO05D007951 2.0e-66 256.5 258 55.4
BcaC07g41342 Brassica carinata HOM05D006054 ORTHO05D007951 2.6e-66 256.1 258 61.2
Rhsim12G0139100 Rhododendron simsii HOM05D006054 ORTHO05D007951 1.3e-65 253.8 266 60.2
AUR62042074 Chenopodium quinoa HOM05D006054 ORTHO05D007951 3.1e-64 249.2 276 50.7
Os03g0708500 Oryza sativa ssp. japonica HOM05D006054 ORTHO05D007951 3.1e-64 249.2 270 51.5
arahy.Tifrunner.gnm1.ann1.LZ1976 Arachis hypogaea HOM05D006054 ORTHO05D007951 4.1e-64 248.8 196 65.3
ATR1102G034 Amborella trichopoda HOM05D006054 ORTHO05D007951 5.9e-63 245.0 183 67.2
AUR62041524 Chenopodium quinoa HOM05D006054 ORTHO05D007951 1.0e-62 244.2 211 59.2
arahy.Tifrunner.gnm1.ann1.FT2DSH Arachis hypogaea HOM05D006054 ORTHO05D007951 1.3e-62 243.8 196 64.3
Atru.chr9.1750 Acer truncatum HOM05D006054 ORTHO05D007951 2.3e-62 243.0 168 75.0
Zm00001eb216540 Zea mays HOM05D006054 ORTHO05D007951 3.8e-62 242.3 186 65.6
Ah.11g043570 Amaranthus hybridus HOM05D006054 ORTHO05D007951 1.7e-54 216.9 258 50.0
Thhalv10019056m.g Eutrema salsugineum HOM05D006054 ORTHO05D007951 2.5e-53 213.0 251 47.8
AT1G73655 Arabidopsis thaliana HOM05D006054 ORTHO05D007951 5.6e-53 211.8 175 60.0
BcaC08g45629 Brassica carinata HOM05D006054 ORTHO05D007951 9.5e-53 211.1 248 49.2
Sp5g28830 Schrenkiella parvula HOM05D006054 ORTHO05D007951 9.5e-53 211.1 249 49.0
BcaB03g15721 Brassica carinata HOM05D006054 ORTHO05D007951 3.6e-52 209.1 251 49.0
A07p29740 Brassica napus HOM05D006054 ORTHO05D007951 8.0e-52 208.0 174 59.8
BraA07t30613Z Brassica rapa HOM05D006054 ORTHO05D007951 8.0e-52 208.0 174 59.8
Pp3c16_12630 Physcomitrium patens HOM05D006054 ORTHO05D007951 1.1e-51 207.6 191 57.1
AagrBONN_evm.TU.Sc2ySwM_228.1432 Anthoceros agrestis HOM05D006054 ORTHO05D007951 1.8e-51 206.8 187 57.8
Carub.0002s2040 Capsella rubella HOM05D006054 ORTHO05D007951 6.8e-51 204.9 250 48.8
C06p33920 Brassica napus HOM05D006054 ORTHO05D007951 8.9e-51 204.5 248 48.8
BolC6t38505H Brassica oleracea HOM05D006054 ORTHO05D007951 8.9e-51 204.5 248 48.8
AL2G33440 Arabidopsis lyrata HOM05D006054 ORTHO05D007951 2.6e-50 203.0 249 49.0
Haze_18811 Corylus avellana HOM05D006054 ORTHO05D007951 4.4e-50 202.2 119 81.5
CARHR066720 Cardamine hirsuta HOM05D006054 ORTHO05D007951 2.2e-49 199.9 245 46.9
Aa31LG4G3960 Aethionema arabicum HOM05D006054 ORTHO05D007951 2.7e-47 193.0 210 51.4
Mapoly0139s0002 Marchantia polymorpha HOM05D006054 ORTHO05D007951 2.7e-47 193.0 189 54.0
Duzib068G1027 Durio zibethinus HOM05D006054 ORTHO05D007951 3.5e-47 192.6 147 65.3
SMO200G0018 Selaginella moellendorffii HOM05D006054 ORTHO05D007951 3.9e-46 189.1 179 55.3
CARHR018740 Cardamine hirsuta HOM05D006054 ORTHO05D007951 1.9e-45 186.8 120 71.7
CDE07G1103 Ceratophyllum demersum HOM05D006054 ORTHO05D007597 3.6e-44 182.6 249 49.4
TAR629G2851 Trochodendron aralioides HOM05D006054 ORTHO05D007951 3.6e-44 182.6 115 77.4
Hund02327 Selenicereus undatus HOM05D006054 ORTHO05D007951 2.1e-39 166.8 195 53.8
Actinidia18902 Actinidia chinensis HOM05D006054 ORTHO05D007951 1.8e-35 153.7 104 73.1
Cre02.g095097 Chlamydomonas reinhardtii HOM05D006054 ORTHO05D007951 1.9e-32 143.7 203 41.9
CDE06G1309 Ceratophyllum demersum HOM05D006054 ORTHO05D007951 4.0e-27 125.9 162 56.8
Zm00001eb235390 Zea mays HOM05D006054 ORTHO05D007951 2.6e-26 123.2 101 60.4
MCO04G385 Micromonas commoda HOM05D006054 ORTHO05D007951 5.8e-26 122.1 183 40.4
PRCOL_00004995 Prasinoderma coloniale HOM05D006054 ORTHO05D007951 2.8e-20 103.2 210 36.7
SGA_v2.0_scaffold313G48304 Striga asiatica HOM05D006054 ORTHO05D007951 5.3e-19 99.0 124 48.4
MCO02G248 Micromonas commoda HOM05D006054 ORTHO05D007951 4.9e-17 92.4 192 32.8
TAR629G2659 Trochodendron aralioides HOM05D006054 ORTHO05D007951 1.1e-16 91.3 107 59.8
Cre10.g454250 Chlamydomonas reinhardtii HOM05D006054 ORTHO05D044148 1.6e-12 77.4 144 33.3
Zm00001eb235380 Zea mays HOM05D006054 ORTHO05D007951 2.1e-12 77.0 49 73.5
MCO07G350 Micromonas commoda HOM05D006054 ORTHO05D044148 4.8e-12 75.9 109 38.5
BcaB05g24090 Brassica carinata HOM05D006054 ORTHO05D007951 4.0e-11 72.8 111 44.1
PRCOL_00004958 Prasinoderma coloniale HOM05D006054 ORTHO05D007951 2.0e-10 70.5 175 31.4
Cre09.g399300 Chlamydomonas reinhardtii HOM05D006054 ORTHO05D044308 1.3e-09 67.8 116 38.8
Prupe.7G122200 Prunus persica HOM05D000031 ORTHO05D001864 5.5e-08 62.4 173 30.6
Mapoly0135s0005 Marchantia polymorpha HOM05D001775 ORTHO05D008700 2.1e-07 60.5 142 31.0
RcHm_v2.0_Chr3g0471471 Rosa chinensis HOM05D001775 ORTHO05D008700 2.7e-07 60.1 173 30.6
Pp3c17_4710 Physcomitrium patens HOM05D001775 ORTHO05D008700 3.5e-07 59.7 118 31.4
Prupe.1G087100 Prunus persica HOM05D007400 ORTHO05D009351 3.5e-07 59.7 157 29.3
Actinidia28942 Actinidia chinensis HOM05D001775 ORTHO05D008700 6.0e-07 58.9 125 32.8
MD12G1101900 Malus domestica HOM05D001775 ORTHO05D008700 1.0e-06 58.2 197 27.9
FvH4_6g17331 Fragaria vesca HOM05D001775 ORTHO05D008700 1.3e-06 57.8 173 30.1
Ciclev10019343m.g Citrus clementina HOM05D001907 ORTHO05D002387 2.3e-06 57.0 104 35.6
Manes.09G047800 Manihot esculenta HOM05D001775 ORTHO05D008700 2.3e-06 57.0 125 31.2
SGA_v2.0_scaffold75G24814 Striga asiatica HOM05D001775 ORTHO05D008700 3.0e-06 56.6 125 32.0
AL6G14810 Arabidopsis lyrata HOM05D001907 ORTHO05D011102 3.9e-06 56.2 101 31.7
MCO16G300 Micromonas commoda HOM05D000371 ORTHO05D003573 3.9e-06 56.2 124 33.1
SMO367G0543 Selaginella moellendorffii HOM05D001775 ORTHO05D008700 5.1e-06 55.8 125 31.2
Solyc01g091340.3 Solanum lycopersicum HOM05D001907 ORTHO05D002387 5.1e-06 55.8 134 29.9
Sopen01g037080 Solanum pennellii HOM05D001907 ORTHO05D002387 5.1e-06 55.8 134 29.9
PGSC0003DMG400012775 Solanum tuberosum HOM05D001907 ORTHO05D002387 5.1e-06 55.8 135 29.6
AUR62032962 Chenopodium quinoa HOM05D001907 ORTHO05D002387 6.7e-06 55.5 109 37.6
PSO675G4171 Papaver somniferum HOM05D000371 ORTHO05D003573 6.7e-06 55.5 184 25.5
Actinidia12687 Actinidia chinensis HOM05D001907 ORTHO05D002387 8.7e-06 55.1 101 34.7
Cre16.g675550 Chlamydomonas reinhardtii HOM05D000371 ORTHO05D003573 8.7e-06 55.1 149 30.9


User provided reference genes

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