Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 1.2e-186 656.8 419 100.0
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.3e-126 457.2 355 85.1
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 4.5e-122 442.2 355 90.1
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 1.8e-94 350.5 355 59.4
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 3.2e-72 276.6 354 48.3
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 2.8e-68 263.5 356 47.8
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 3.1e-67 260.0 356 48.6
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.6e-66 257.7 361 51.5
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.6e-66 257.7 354 47.5
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 2.7e-66 256.9 355 48.2
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 7.7e-66 255.4 352 49.4
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.3e-65 253.8 361 47.4
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 5.0e-65 252.7 357 45.4
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 1.5e-64 251.1 357 46.8
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 3.3e-64 250.0 357 45.7
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 7.2e-64 248.8 358 45.8
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 7.2e-64 248.8 383 44.1
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.6e-63 246.5 356 46.6
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 4.7e-63 246.1 356 53.1
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 9.8e-61 238.4 350 55.4
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.4e-59 234.6 356 44.9
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 2.4e-59 233.8 356 45.2
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 4.1e-59 233.0 351 45.0
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 7.0e-59 232.3 352 44.9
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 3.5e-58 229.9 359 45.7
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 5.9e-58 229.2 351 42.5
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.0e-57 228.4 351 43.9
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 8.6e-57 225.3 361 44.6
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 9.5e-56 221.9 351 43.0
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 4.7e-55 219.5 295 47.8
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 6.1e-55 219.2 353 43.6
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 6.1e-55 219.2 356 44.9
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.4e-54 218.0 356 43.3
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 1.4e-54 218.0 354 44.6
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.8e-54 217.6 297 47.5
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 2.9e-52 210.3 370 45.4
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 3.7e-52 209.9 356 52.2
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 3.7e-52 209.9 203 61.6
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 4.9e-52 209.5 297 45.5
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 1.1e-51 208.4 357 44.3
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.9e-51 207.6 389 41.1
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 5.4e-51 206.1 282 60.3
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 7.0e-51 205.7 355 41.1
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 7.0e-51 205.7 359 42.6
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 7.0e-51 205.7 358 41.6
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 9.2e-51 205.3 357 42.6
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 3.5e-50 203.4 351 42.2
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 6.6e-49 199.1 354 41.8
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 1.9e-48 197.6 354 39.3
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 7.3e-48 195.7 362 40.1
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 9.5e-48 195.3 351 40.5
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 8.0e-47 192.2 355 42.3
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.8e-46 191.0 351 40.5
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 2.3e-46 190.7 359 44.0
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 8.9e-46 188.7 351 40.5
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 8.9e-46 188.7 351 39.9
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 4.4e-45 186.4 362 39.0
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 7.5e-45 185.7 366 39.1
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.3e-44 184.9 384 39.3
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.7e-44 184.5 359 39.6
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 2.2e-44 184.1 363 39.9
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 8.3e-44 182.2 349 37.8
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 1.1e-43 181.8 350 40.6
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.9e-43 181.0 348 40.5
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.2e-43 180.3 365 39.2
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 3.2e-43 180.3 522 32.8
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 9.2e-43 178.7 356 39.3
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 9.2e-43 178.7 348 40.5
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-42 178.3 359 39.3
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 4.6e-42 176.4 348 37.1
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 6.0e-42 176.0 362 37.0
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 7.8e-42 175.6 362 38.1
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 1.0e-41 175.3 350 38.9
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 3.0e-41 173.7 352 39.5
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 3.0e-41 173.7 359 37.6
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 3.9e-41 173.3 362 38.7
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 1.1e-40 171.8 348 35.9
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.9e-40 171.0 350 39.4
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 1.9e-40 171.0 359 35.9
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 4.3e-40 169.9 296 42.2
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 5.6e-40 169.5 356 38.2
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 4.7e-39 166.4 295 51.9
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 6.2e-39 166.0 293 38.2
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.1e-38 165.2 354 46.0
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 3.1e-38 163.7 348 34.8
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 5.2e-38 162.9 358 36.9
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 4.4e-37 159.8 342 37.7
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 4.4e-37 159.8 342 37.7
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 7.5e-37 159.1 352 46.0
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 2.9e-36 157.1 350 36.0
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 6.4e-36 156.0 293 40.6
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 8.3e-36 155.6 342 35.4
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 8.3e-36 155.6 349 38.4
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 1.4e-35 154.8 342 40.4
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 1.9e-35 154.5 293 38.2
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 3.2e-35 153.7 260 43.1
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.6e-34 151.4 290 39.7
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 7.8e-34 149.1 294 38.8
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 1.0e-33 148.7 354 34.7
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.3e-33 148.3 298 40.3
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.7e-33 147.9 349 38.4
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 3.9e-33 146.7 358 39.4
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 6.6e-33 146.0 239 42.7
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 1.9e-32 144.4 240 45.0
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 4.3e-32 143.3 473 29.6
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.6e-31 141.4 313 36.4
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.4e-30 137.5 131 61.8
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 5.2e-30 136.3 294 37.1
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 1.5e-29 134.8 258 40.3
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.0e-29 134.4 346 36.4
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 3.4e-29 133.7 293 49.1
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 7.6e-29 132.5 358 33.5
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 1.7e-28 131.3 293 33.8
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 5.4e-27 126.3 348 33.3
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 7.1e-27 125.9 293 48.1
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.2e-26 125.2 298 37.2
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 2.7e-26 124.0 298 32.9
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 7.8e-26 122.5 269 37.2
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 7.8e-26 122.5 291 43.3
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 2.3e-25 120.9 342 31.0
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 8.7e-25 119.0 290 31.7
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.9e-24 117.9 358 31.6
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 5.6e-24 116.3 255 36.9
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 1.2e-23 115.2 292 31.8
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.4e-22 111.7 147 51.7
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.4e-22 111.7 294 33.3
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 5.1e-17 93.2 112 48.2
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.6e-17 92.8 303 29.4
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 1.1e-16 92.0 108 50.9
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.1e-16 92.0 294 29.6
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.5e-16 91.7 198 42.9
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.5e-16 90.9 87 54.0
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 9.6e-16 89.0 109 58.7
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.6e-13 80.9 93 57.0
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 5.1e-09 66.6 299 28.1
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 4.3e-08 63.5 197 29.4
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 5.6e-08 63.2 231 27.7
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 9.6e-08 62.4 87 41.4
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 2.4e-06 57.8 50 70.0
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 2.4e-06 57.8 131 32.1


User provided reference genes

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