Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 5.9e-40 167.2 89 100.0
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 1.4e-38 162.5 89 95.5
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.5e-35 152.5 87 90.8
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 1.1e-33 146.4 87 86.2
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 1.9e-30 135.6 89 75.3
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 5.5e-30 134.0 87 82.8
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 2.1e-29 132.1 87 73.6
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 3.6e-29 131.3 87 72.4
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 4.7e-29 131.0 87 72.4
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 6.1e-29 130.6 89 70.8
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 6.1e-29 130.6 89 70.8
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 6.1e-29 130.6 89 70.8
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 1.8e-28 129.0 89 71.9
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 4.0e-28 127.9 86 74.4
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 6.7e-28 127.1 87 70.1
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 1.5e-27 125.9 88 72.7
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 1.5e-27 125.9 86 70.9
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 2.6e-27 125.2 85 69.4
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 2.6e-27 125.2 83 77.1
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 5.7e-27 124.0 87 72.4
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 7.5e-27 123.6 86 70.9
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 7.5e-27 123.6 86 70.9
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 9.7e-27 123.2 86 69.8
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 9.7e-27 123.2 82 76.8
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 1.3e-26 122.9 86 70.9
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.3e-26 122.9 83 73.5
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 2.2e-26 122.1 87 73.6
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 2.2e-26 122.1 87 73.6
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 3.7e-26 121.3 86 67.4
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 3.7e-26 121.3 84 69.0
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 4.8e-26 120.9 86 68.6
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 6.3e-26 120.6 83 73.5
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 6.3e-26 120.6 86 70.9
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 6.3e-26 120.6 88 68.2
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 8.3e-26 120.2 87 70.1
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 8.3e-26 120.2 83 69.9
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.1e-25 119.8 86 67.4
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.1e-25 119.8 86 69.8
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 1.1e-25 119.8 86 67.4
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.4e-25 119.4 83 69.9
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 1.4e-25 119.4 83 72.3
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.8e-25 119.0 87 66.7
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 1.8e-25 119.0 85 69.4
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 2.4e-25 118.6 86 66.3
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 3.1e-25 118.2 86 66.3
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 5.3e-25 117.5 82 72.0
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 5.3e-25 117.5 85 63.5
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 5.3e-25 117.5 82 69.5
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 7.0e-25 117.1 86 68.6
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 7.0e-25 117.1 83 69.9
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 7.0e-25 117.1 85 67.1
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 9.1e-25 116.7 85 67.1
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 9.1e-25 116.7 83 67.5
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 9.1e-25 116.7 83 68.7
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 9.1e-25 116.7 85 70.6
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 1.2e-24 116.3 85 67.1
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 1.2e-24 116.3 85 65.9
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.6e-24 115.9 86 67.4
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.6e-24 115.9 82 69.5
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 2.0e-24 115.5 85 67.1
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 2.0e-24 115.5 84 69.0
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 2.7e-24 115.2 84 65.5
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 3.5e-24 114.8 88 62.5
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 3.5e-24 114.8 85 64.7
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 3.5e-24 114.8 85 64.7
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 4.5e-24 114.4 87 65.5
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 4.5e-24 114.4 85 64.7
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 5.9e-24 114.0 85 64.7
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 5.9e-24 114.0 85 63.5
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 5.9e-24 114.0 85 67.1
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 5.9e-24 114.0 84 69.0
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 7.7e-24 113.6 88 62.5
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 7.7e-24 113.6 83 67.5
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 1.3e-23 112.8 83 66.3
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.3e-23 112.8 88 63.6
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 1.3e-23 112.8 85 64.7
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.3e-23 112.8 82 68.3
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.3e-23 112.8 82 68.3
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 2.2e-23 112.1 87 62.1
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 2.9e-23 111.7 85 67.1
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 2.9e-23 111.7 83 65.1
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 2.9e-23 111.7 81 69.1
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 3.8e-23 111.3 82 68.3
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 5.0e-23 110.9 87 63.2
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 5.0e-23 110.9 86 60.5
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 8.5e-23 110.2 86 64.0
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 8.5e-23 110.2 85 67.1
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 1.5e-22 109.4 87 57.5
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 3.6e-21 104.8 78 73.1
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 3.6e-21 104.8 85 58.8
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.8e-20 102.4 78 66.7
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 6.8e-20 100.5 86 59.3
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 6.8e-20 100.5 82 58.5
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 1.2e-19 99.8 82 61.0
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 2.0e-19 99.0 86 54.7
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 2.6e-19 98.6 72 68.1
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 2.6e-19 98.6 81 63.0
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 3.4e-19 98.2 80 60.0
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 7.5e-19 97.1 82 61.0
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 9.8e-19 96.7 82 59.8
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 9.8e-19 96.7 82 58.5
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 2.8e-18 95.1 80 57.5
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 2.8e-18 95.1 80 57.5
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 3.7e-18 94.7 79 58.2
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 4.8e-18 94.4 82 56.1
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 8.3e-18 93.6 79 57.0
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 8.3e-18 93.6 62 74.2
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.1e-17 93.2 84 51.2
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 1.8e-17 92.4 68 67.6
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 2.4e-17 92.0 69 65.2
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 4.1e-17 91.3 79 55.7
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 4.1e-17 91.3 79 55.7
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 7.0e-17 90.5 79 54.4
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 7.0e-17 90.5 79 54.4
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 7.0e-17 90.5 79 55.7
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 7.0e-17 90.5 79 54.4
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-16 89.7 79 55.7
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 1.6e-16 89.4 79 54.4
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 1.6e-16 89.4 79 54.4
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 2.0e-16 89.0 80 60.0
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 2.0e-16 89.0 79 54.4
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 2.7e-16 88.6 79 54.4
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 2.7e-16 88.6 79 54.4
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 2.7e-16 88.6 84 48.8
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.7e-16 88.6 67 64.2
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 4.5e-16 87.8 79 54.4
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 4.5e-16 87.8 78 53.8
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 4.5e-16 87.8 79 54.4
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 4.5e-16 87.8 79 54.4
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 4.5e-16 87.8 79 53.2
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 5.9e-16 87.4 61 68.9
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 5.9e-16 87.4 88 53.4
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 1.3e-15 86.3 73 54.8
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 5.0e-15 84.3 81 54.3
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 1.9e-14 82.4 81 58.0
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 1.2e-13 79.7 83 44.6
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 2.8e-13 78.6 62 59.7
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 4.7e-13 77.8 56 71.4
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 1.8e-12 75.9 72 54.2
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 1.8e-12 75.9 72 54.2
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 1.8e-12 75.9 82 51.2
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 2.3e-12 75.5 72 54.2
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 5.2e-12 74.3 72 52.8
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 2.6e-11 72.0 73 53.4
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 5.4e-09 64.3 53 62.3
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 9.2e-09 63.5 64 46.9
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 9.2e-09 63.5 39 76.9
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 5.9e-08 60.8 74 43.2
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 1.7e-07 59.3 80 45.0
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 8.6e-07 57.0 82 32.9
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 3.3e-06 55.1 35 80.0


User provided reference genes

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