Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C001986.2 Cucumis melo HOM05D007106 ORTHO05D007770 2.0e-46 188.7 92 100.0
CsaV3_1G005530 Cucumis sativus L. HOM05D007106 ORTHO05D007770 9.1e-44 179.9 92 96.7
ClCG04G012220 Citrullus lanatus HOM05D007106 ORTHO05D007770 3.0e-39 164.9 93 89.2
Sed0016719 Sechium edule HOM05D007106 ORTHO05D007770 4.5e-35 151.0 90 81.1
Sed0002642 Sechium edule HOM05D007106 ORTHO05D007770 2.3e-31 138.7 90 74.4
COL.COLO4_08636 Corchorus olitorius HOM05D007106 ORTHO05D007770 3.1e-20 101.7 91 58.2
Manes.06G091700 Manihot esculenta HOM05D007106 ORTHO05D007770 2.2e-18 95.5 98 56.1
Thecc.03G089800 Theobroma cacao HOM05D007106 ORTHO05D007770 2.2e-18 95.5 89 55.1
Duzib205G0867 Durio zibethinus HOM05D007106 ORTHO05D007770 9.5e-17 90.1 94 53.2
Manes.14G078900 Manihot esculenta HOM05D007106 ORTHO05D007770 4.7e-16 87.8 94 52.1
FvH4_5g14840 Fragaria vesca HOM05D007106 ORTHO05D007770 1.8e-15 85.9 92 51.1
FAN18G2192 Fragaria x ananassa HOM05D007106 ORTHO05D007770 1.8e-15 85.9 92 51.1
RcHm_v2.0_Chr7g0181551 Rosa chinensis HOM05D007106 ORTHO05D007770 3.0e-15 85.1 92 50.0
Potri.015G062300 Populus trichocarpa HOM05D007106 ORTHO05D007770 6.8e-15 84.0 93 49.5
Dinv38719 Davidia involucrata HOM05D007106 ORTHO05D007770 1.5e-14 82.8 97 50.5
FAN08G1525 Fragaria x ananassa HOM05D007106 ORTHO05D007770 2.0e-14 82.4 93 49.5
MD14G1201500 Malus domestica HOM05D007106 ORTHO05D007770 5.7e-14 80.9 93 50.5
Gohir.D07G070600 Gossypium hirsutum HOM05D007106 ORTHO05D007770 9.8e-14 80.1 83 50.6
Gorai.001G074500 Gossypium raimondii HOM05D007106 ORTHO05D007770 9.8e-14 80.1 83 50.6
Gohir.D03G093700 Gossypium hirsutum HOM05D007106 ORTHO05D007770 1.3e-13 79.7 82 52.4
Gorai.003G097700 Gossypium raimondii HOM05D007106 ORTHO05D007770 1.3e-13 79.7 82 52.4
Prupe.5G194500 Prunus persica HOM05D007106 ORTHO05D007770 1.7e-13 79.3 96 50.0
Gohir.A03G067200 Gossypium hirsutum HOM05D007106 ORTHO05D007770 2.8e-13 78.6 82 51.2
CANSAT80G2807 Cannabis sativa HOM05D007106 ORTHO05D007770 3.7e-13 78.2 99 47.5
Gohir.A07G066100 Gossypium hirsutum HOM05D007106 ORTHO05D007770 8.3e-13 77.0 83 49.4
Cpa.g.sc423.1 Carica papaya HOM05D007106 ORTHO05D007770 1.8e-12 75.9 88 52.3
Hund02644 Selenicereus undatus HOM05D007106 ORTHO05D007770 3.1e-12 75.1 93 48.4
Atru.chr9.252 Acer truncatum HOM05D007106 ORTHO05D007770 5.4e-12 74.3 86 54.7
CSS0012235 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 5.4e-12 74.3 89 50.6
CSS0040002 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 5.4e-12 74.3 89 50.6
TAR374G1315 Trochodendron aralioides HOM05D007106 ORTHO05D007770 1.6e-11 72.8 84 53.6
Cfa018934 Carpinus fangiana HOM05D007106 ORTHO05D007770 2.7e-11 72.0 90 53.3
CiPaw.11G045300 Carya illinoinensis HOM05D007106 ORTHO05D007770 2.7e-11 72.0 94 48.9
EL10Ac5g11028 Beta vulgaris HOM05D007106 ORTHO05D007770 4.5e-11 71.2 99 45.5
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 5.9e-11 70.9 82 48.8
Nn3g17263 Nelumbo nucifera HOM05D007106 ORTHO05D007770 7.8e-11 70.5 81 50.6
PGR083G1166 Punica granatum HOM05D007106 ORTHO05D007770 7.8e-11 70.5 96 49.0
QL10p017125 Quercus lobata HOM05D007106 ORTHO05D007770 1.0e-10 70.1 83 49.4
vmacro17537 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 1.0e-10 70.1 91 46.2
Ah.11g048350 Amaranthus hybridus HOM05D007106 ORTHO05D007770 3.8e-10 68.2 98 41.8
Cc04_g16540 Coffea canephora HOM05D007106 ORTHO05D007770 3.8e-10 68.2 88 51.1
TWI15G1028 Tripterygium wilfordii HOM05D007106 ORTHO05D007770 5.0e-10 67.8 98 45.9
Actinidia35002 Actinidia chinensis HOM05D007106 ORTHO05D007770 8.6e-10 67.0 88 47.7
Hma1.2p1_1936F.1_g308220 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 1.1e-09 66.6 82 47.6
Hma1.2p1_2516F.1_g323695 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 1.1e-09 66.6 82 47.6
Actinidia19038 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.5e-09 66.2 89 47.2
MD06G1194400 Malus domestica HOM05D007106 ORTHO05D007770 1.5e-09 66.2 84 48.8
Nitab4.5_0001128g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 1.5e-09 66.2 99 45.5
Nitab4.5_0006000g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 1.5e-09 66.2 97 46.4
GSVIVG01007993001 Vitis vinifera HOM05D007106 ORTHO05D007770 1.5e-09 66.2 78 50.0
Actinidia04893 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.9e-09 65.9 78 53.8
Actinidia37624 Actinidia chinensis HOM05D007106 ORTHO05D007770 2.5e-09 65.5 77 51.9
Peaxi162Scf00274g00521 Petunia axillaris HOM05D007106 ORTHO05D007770 3.3e-09 65.1 97 43.3
THA.LOC104821419 Tarenaya hassleriana HOM05D012999 ORTHO05D007770 3.3e-09 65.1 94 46.8
Solyc03g115950.3 Solanum lycopersicum HOM05D007106 ORTHO05D007770 5.6e-09 64.3 94 44.7
Rhsim12G0155900 Rhododendron simsii HOM05D007106 ORTHO05D007770 7.3e-09 63.9 83 48.2
Ciclev10022899m.g Citrus clementina HOM05D007106 ORTHO05D007770 9.5e-09 63.5 98 45.9
CSS0008414 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.2e-08 63.2 83 44.6
Dinv25036 Davidia involucrata HOM05D007691 ORTHO05D008758 1.2e-08 63.2 81 45.7
CiPaw.12G013000 Carya illinoinensis HOM05D007106 ORTHO05D007770 1.6e-08 62.8 78 48.7
Haze_12000 Corylus avellana HOM05D007106 ORTHO05D007770 1.6e-08 62.8 85 45.9
Oeu047292.1 Olea europaea HOM05D007106 ORTHO05D007770 1.6e-08 62.8 97 44.3
Psat4g050160 Pisum sativum HOM05D007106 ORTHO05D007770 2.8e-08 62.0 84 46.4
Eucgr.K02478 Eucalyptus grandis HOM05D007106 ORTHO05D007770 4.7e-08 61.2 96 40.6
vmacro16544 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 4.7e-08 61.2 80 48.8
PGSC0003DMG400019509 Solanum tuberosum HOM05D007106 ORTHO05D007770 1.8e-07 59.3 95 43.2
TPR.G9262 Trifolium pratense HOM05D007106 ORTHO05D007770 1.8e-07 59.3 86 44.2
SalBow7G1857 Salvia bowleyana HOM05D007106 ORTHO05D007770 2.3e-07 58.9 92 39.1
Psat5g199960 Pisum sativum HOM05D007106 ORTHO05D007770 4.0e-07 58.2 81 49.4
Glyma.17G100900 Glycine max HOM05D007106 ORTHO05D007770 6.8e-07 57.4 83 39.8
THA.LOC104812541 Tarenaya hassleriana HOM05D007106 ORTHO05D007770 6.8e-07 57.4 32 81.2
TPR.G11889 Trifolium pratense HOM05D007106 ORTHO05D007770 8.9e-07 57.0 84 45.2
TAR371G0193 Trochodendron aralioides HOM05D007106 ORTHO05D007770 1.2e-06 56.6 83 43.4
Lsat_1_v5_gn_1_14001 Lactuca sativa HOM05D046857 ORTHO05D048244 1.5e-06 56.2 86 44.2
Carub.0005s1360 Capsella rubella HOM05D012999 ORTHO05D007770 2.0e-06 55.8 83 47.0
QL03p068707 Quercus lobata HOM05D007106 ORTHO05D007770 2.6e-06 55.5 86 43.0
Dinv13794 Davidia involucrata HOM05D007691 ORTHO05D008758 3.4e-06 55.1 84 44.0
Os01g0815400 Oryza sativa ssp. japonica HOM05D016423 ORTHO05D298867 3.4e-06 55.1 80 45.0
HPP92_013045 Vanilla planifolia HOM05D007106 ORTHO05D432401 3.4e-06 55.1 73 47.9
Glyma.06G194600 Glycine max HOM05D007106 ORTHO05D007770 4.4e-06 54.7 89 40.4
Lj1g0012300 Lotus japonicus HOM05D007106 ORTHO05D007770 4.4e-06 54.7 73 45.2
Nitab4.5_0007090g0010 Nicotiana tabacum HOM05D018532 ORTHO05D008758 4.4e-06 54.7 81 43.2
Oeu022764.1 Olea europaea HOM05D007106 ORTHO05D007770 4.4e-06 54.7 90 41.1
HanXRQChr05g0155941 Helianthus annuus HOM05D007106 ORTHO05D007770 5.7e-06 54.3 81 45.7
Hma1.2p1_0075F.1_g039350 Hydrangea macrophylla HOM05D007691 ORTHO05D008758 5.7e-06 54.3 84 40.5
Phvul.009G186700 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 5.7e-06 54.3 85 41.2
Eucgr.B00514 Eucalyptus grandis HOM05D007106 ORTHO05D007770 7.5e-06 53.9 89 38.2
Cc11_g12880 Coffea canephora HOM05D007106 ORTHO05D007770 9.8e-06 53.5 76 44.7
Glyma.05G026000 Glycine max HOM05D007106 ORTHO05D007770 9.8e-06 53.5 83 39.8
Medtr3g435530 Medicago truncatula HOM05D007106 ORTHO05D007770 9.8e-06 53.5 85 42.4


User provided reference genes

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