Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C001310.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.2e-38 162.5 76 100.0
MELO3C027491.2 Cucumis melo HOM05D003794 ORTHO05D004464 2.9e-35 151.4 70 100.0
CsaV3_1G046430 Cucumis sativus L. HOM05D003794 ORTHO05D004464 2.5e-31 138.3 77 88.3
ClCG01G009250 Citrullus lanatus HOM05D003794 ORTHO05D004464 2.0e-28 128.6 76 80.3
CsaV3_1G046440 Cucumis sativus L. HOM05D003794 ORTHO05D004464 9.2e-18 93.2 77 61.0
ClCG01G009260 Citrullus lanatus HOM05D003794 ORTHO05D004464 2.1e-17 92.0 76 57.9
Sed0013970 Sechium edule HOM05D003794 ORTHO05D004464 2.7e-17 91.7 76 56.6
MELO3C021763.2 Cucumis melo HOM05D003794 ORTHO05D004464 6.0e-17 90.5 77 59.7
ClCG01G009270 Citrullus lanatus HOM05D003794 ORTHO05D004464 3.0e-16 88.2 77 55.8
MD05G1254300 Malus domestica HOM05D003794 ORTHO05D004464 3.3e-15 84.7 76 51.3
Cfa000722 Carpinus fangiana HOM05D003794 ORTHO05D004464 7.3e-15 83.6 83 54.2
ClCG01G009280 Citrullus lanatus HOM05D003794 ORTHO05D004464 7.3e-15 83.6 80 51.2
Atru.chr10.446 Acer truncatum HOM05D003794 ORTHO05D004464 2.1e-14 82.0 77 54.5
PSO675G7591 Papaver somniferum HOM05D003794 ORTHO05D004464 8.1e-14 80.1 75 48.0
Haze_06027 Corylus avellana HOM05D003794 ORTHO05D004464 1.4e-13 79.3 77 53.2
Haze_06028 Corylus avellana HOM05D003794 ORTHO05D004464 1.4e-13 79.3 77 53.2
Dinv05961 Davidia involucrata HOM05D003794 ORTHO05D004464 2.4e-13 78.6 76 52.6
PSO675G9055 Papaver somniferum HOM05D003794 ORTHO05D004464 3.1e-13 78.2 75 46.7
Lj1A1144T44 Lonicera japonica HOM05D003794 ORTHO05D004464 5.2e-13 77.4 76 48.7
Sed0014796 Sechium edule HOM05D003794 ORTHO05D004464 6.8e-13 77.0 80 47.5
MELO3C021768.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.2e-12 76.3 77 49.4
TWI38G0727 Tripterygium wilfordii HOM05D003794 ORTHO05D004464 1.3e-11 72.8 76 52.6
CsaV3_1G046610 Cucumis sativus L. HOM05D003794 ORTHO05D004464 1.7e-11 72.4 78 47.4
Hma1.2p1_0040F.1_g025090 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 2.2e-11 72.0 78 50.0
Potri.015G120200 Populus trichocarpa HOM05D003794 ORTHO05D004464 2.2e-11 72.0 76 51.3
Ciclev10016974m.g Citrus clementina HOM05D003794 ORTHO05D004464 3.8e-11 71.2 80 48.8
CSS0016108 Camellia sinensis var. sinensis HOM05D003794 ORTHO05D004464 4.9e-11 70.9 76 48.7
ClCG01G009290 Citrullus lanatus HOM05D003794 ORTHO05D004464 4.9e-11 70.9 77 46.8
MELO3C021767.2 Cucumis melo HOM05D003794 ORTHO05D004464 4.9e-11 70.9 79 48.1
CiPaw.09G078700 Carya illinoinensis HOM05D003794 ORTHO05D004464 6.4e-11 70.5 76 42.1
AL1G49280 Arabidopsis lyrata HOM05D003794 ORTHO05D004464 8.4e-11 70.1 81 45.7
BcaC05g24803 Brassica carinata HOM05D003794 ORTHO05D004464 8.4e-11 70.1 82 46.3
CANSAT35G2022 Cannabis sativa HOM05D003794 ORTHO05D004464 8.4e-11 70.1 76 47.4
Carub.0001s2960 Capsella rubella HOM05D003794 ORTHO05D004464 8.4e-11 70.1 81 44.4
Gohir.A06G140900 Gossypium hirsutum HOM05D003794 ORTHO05D004464 8.4e-11 70.1 80 51.2
BcaB07g32782 Brassica carinata HOM05D003794 ORTHO05D004464 1.1e-10 69.7 77 46.8
Sed0017866 Sechium edule HOM05D003794 ORTHO05D004464 1.1e-10 69.7 77 51.9
Prupe.4G110400 Prunus persica HOM05D003794 ORTHO05D004464 1.4e-10 69.3 77 50.6
BcaC05g24807 Brassica carinata HOM05D003794 ORTHO05D004464 1.9e-10 68.9 82 46.3
BcaC05g27150 Brassica carinata HOM05D003794 ORTHO05D004464 1.9e-10 68.9 77 44.2
C05p08300 Brassica napus HOM05D003794 ORTHO05D004464 1.9e-10 68.9 82 46.3
C05p30370 Brassica napus HOM05D003794 ORTHO05D004464 1.9e-10 68.9 77 44.2
BolC5t29580H Brassica oleracea HOM05D003794 ORTHO05D004464 1.9e-10 68.9 82 46.3
Sed0012046 Sechium edule HOM05D003794 ORTHO05D004464 1.9e-10 68.9 75 46.7
A09p35040 Brassica napus HOM05D003794 ORTHO05D004464 2.4e-10 68.6 75 45.3
Lalb_Chr11g0072291 Lupinus albus HOM05D003794 ORTHO05D004464 2.4e-10 68.6 74 48.6
Sed0015410 Sechium edule HOM05D003794 ORTHO05D004464 2.4e-10 68.6 76 46.1
Sed0022492 Sechium edule HOM05D003794 ORTHO05D004464 2.4e-10 68.6 76 46.1
GSVIVG01012092001 Vitis vinifera HOM05D003794 ORTHO05D004464 2.4e-10 68.6 78 44.9
Gohir.D06G145100 Gossypium hirsutum HOM05D003794 ORTHO05D004464 3.2e-10 68.2 80 50.0
Gorai.010G168800 Gossypium raimondii HOM05D003794 ORTHO05D004464 3.2e-10 68.2 80 50.0
RcHm_v2.0_Chr5g0019921 Rosa chinensis HOM05D003794 ORTHO05D004464 3.2e-10 68.2 74 47.3
GSVIVG01012087001 Vitis vinifera HOM05D003794 ORTHO05D004464 3.2e-10 68.2 76 48.7
BraA09t39035Z Brassica rapa HOM05D003794 ORTHO05D004464 4.1e-10 67.8 75 45.3
Gohir.A09G025201 Gossypium hirsutum HOM05D003794 ORTHO05D004464 4.1e-10 67.8 77 50.6
PGR042G1704 Punica granatum HOM05D003794 ORTHO05D004464 4.1e-10 67.8 76 51.3
QL11p018066 Quercus lobata HOM05D003794 ORTHO05D004464 4.1e-10 67.8 76 46.1
Sabra15G0137100 Salix brachista HOM05D003794 ORTHO05D004464 5.4e-10 67.4 76 44.7
A06p06810 Brassica napus HOM05D003794 ORTHO05D004464 7.1e-10 67.0 82 45.1
BraA06t23895Z Brassica rapa HOM05D003794 ORTHO05D004464 7.1e-10 67.0 82 45.1
FvH4_3g12160 Fragaria vesca HOM05D003794 ORTHO05D004464 7.1e-10 67.0 75 50.7
Medtr0026s0010 Medicago truncatula HOM05D003794 ORTHO05D004464 7.1e-10 67.0 77 50.6
RcHm_v2.0_Chr5g0019931 Rosa chinensis HOM05D003794 ORTHO05D004464 7.1e-10 67.0 74 50.0
Potri.012G120340 Populus trichocarpa HOM05D003794 ORTHO05D004464 9.2e-10 66.6 75 46.7
CARHR030680 Cardamine hirsuta HOM05D003794 ORTHO05D004464 1.2e-09 66.2 81 43.2
CsaV3_1G046600 Cucumis sativus L. HOM05D003794 ORTHO05D004464 1.2e-09 66.2 78 42.3
Duzib160G0344 Durio zibethinus HOM05D003794 ORTHO05D004464 1.6e-09 65.9 80 47.5
MD10G1234400 Malus domestica HOM05D003794 ORTHO05D004464 2.1e-09 65.5 75 48.0
RcHm_v2.0_Chr5g0019901 Rosa chinensis HOM05D003794 ORTHO05D004464 2.1e-09 65.5 74 47.3
Sp1g08790 Schrenkiella parvula HOM05D003794 ORTHO05D004464 2.1e-09 65.5 82 43.9
Thecc.06G141300 Theobroma cacao HOM05D003794 ORTHO05D004464 2.1e-09 65.5 76 47.4
Aa31LG9G16050 Aethionema arabicum HOM05D003794 ORTHO05D004464 2.7e-09 65.1 83 43.4
AT1G31200 Arabidopsis thaliana HOM05D003794 ORTHO05D004464 2.7e-09 65.1 81 43.2
ClCG01G025820 Citrullus lanatus HOM05D003794 ORTHO05D004464 2.7e-09 65.1 76 43.4
Thhalv10009870m.g Eutrema salsugineum HOM05D003794 ORTHO05D004464 2.7e-09 65.1 81 43.2
FAN16G1323 Fragaria x ananassa HOM05D003794 ORTHO05D004464 2.7e-09 65.1 72 50.0
Lj6g0000845 Lotus japonicus HOM05D003794 ORTHO05D004464 2.7e-09 65.1 75 49.3
Sabra12G0088700 Salix brachista HOM05D003794 ORTHO05D004464 2.7e-09 65.1 76 46.1
Sabra12G0091800 Salix brachista HOM05D003794 ORTHO05D004464 2.7e-09 65.1 76 46.1
Sp1g27020 Schrenkiella parvula HOM05D003794 ORTHO05D004464 2.7e-09 65.1 81 42.0
arahy.Tifrunner.gnm1.ann1.D9MA0I Arachis hypogaea HOM05D003794 ORTHO05D004464 3.5e-09 64.7 74 47.3
Duzib235G0411 Durio zibethinus HOM05D003794 ORTHO05D004464 3.5e-09 64.7 76 43.4
AL1G20850 Arabidopsis lyrata HOM05D003794 ORTHO05D004464 4.6e-09 64.3 82 42.7
AT1G10155 Arabidopsis thaliana HOM05D003794 ORTHO05D004464 4.6e-09 64.3 82 43.9
MSTRG.7585 Avicennia marina HOM05D003794 ORTHO05D004464 4.6e-09 64.3 76 43.4
FAN25G3487 Fragaria x ananassa HOM05D003794 ORTHO05D004464 4.6e-09 64.3 74 48.6
Carub.0001s0957 Capsella rubella HOM05D003794 ORTHO05D004464 6.0e-09 63.9 82 42.7
Cpa.g.sc135.26 Carica papaya HOM05D003794 ORTHO05D004464 7.8e-09 63.5 79 43.0
Thecc.06G140300 Theobroma cacao HOM05D003794 ORTHO05D004464 7.8e-09 63.5 76 46.1
Aqoxy4G00782 Aquilegia oxysepala HOM05D003794 ORTHO05D004464 1.0e-08 63.2 76 46.1
Gohir.D09G024500 Gossypium hirsutum HOM05D003794 ORTHO05D004464 1.0e-08 63.2 77 48.1
Thhalv10008847m.g Eutrema salsugineum HOM05D003794 ORTHO05D004464 1.3e-08 62.8 82 41.5
Potri.015G120100 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.3e-08 62.8 76 48.7
Aqoxy4G00780 Aquilegia oxysepala HOM05D003794 ORTHO05D004464 1.7e-08 62.4 76 46.1
COL.COLO4_30982 Corchorus olitorius HOM05D003794 ORTHO05D004464 1.7e-08 62.4 76 43.4
CsaV3_6G053030 Cucumis sativus L. HOM05D003794 ORTHO05D004464 1.7e-08 62.4 76 43.4
Migut.M01972 Erythranthe guttata HOM05D003794 ORTHO05D004464 1.7e-08 62.4 74 47.3
Oeu008720.1 Olea europaea HOM05D003794 ORTHO05D004464 1.7e-08 62.4 76 46.1
Oeu050060.1 Olea europaea HOM05D003794 ORTHO05D004464 1.7e-08 62.4 76 43.4
Phvul.009G205500 Phaseolus vulgaris HOM05D003794 ORTHO05D004464 1.7e-08 62.4 75 50.7
Potri.015G118850 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.7e-08 62.4 77 44.2
Potri.015G118900 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.7e-08 62.4 77 44.2
Psat1g023680 Pisum sativum HOM05D003794 ORTHO05D004464 2.3e-08 62.0 75 46.7
Sabra12G0088800 Salix brachista HOM05D003794 ORTHO05D004464 2.3e-08 62.0 76 48.7
GSVIVG01012089001 Vitis vinifera HOM05D003794 ORTHO05D004464 2.3e-08 62.0 76 42.1
Cc09_g06270 Coffea canephora HOM05D003794 ORTHO05D004464 3.9e-08 61.2 76 43.4
arahy.Tifrunner.gnm1.ann1.I4JYF5 Arachis hypogaea HOM05D003794 ORTHO05D004464 5.1e-08 60.8 74 47.3
Gorai.006G028700 Gossypium raimondii HOM05D003794 ORTHO05D004464 5.1e-08 60.8 77 46.8
MELO3C007006.2 Cucumis melo HOM05D003794 ORTHO05D004464 6.6e-08 60.5 76 38.2
Potri.012G120160 Populus trichocarpa HOM05D003794 ORTHO05D004464 6.6e-08 60.5 76 47.4
THA.LOC104814363 Tarenaya hassleriana HOM05D003794 ORTHO05D004464 6.6e-08 60.5 78 43.6
Gohir.D03G117566 Gossypium hirsutum HOM05D003794 ORTHO05D004464 8.7e-08 60.1 73 47.9
TPR.G9537 Trifolium pratense HOM05D003794 ORTHO05D004464 1.1e-07 59.7 76 44.7
Peaxi162Scf00367g00015 Petunia axillaris HOM05D003794 ORTHO05D004464 1.5e-07 59.3 79 45.6
Glyma.06G221100 Glycine max HOM05D003794 ORTHO05D004464 3.3e-07 58.2 76 47.4
Aa31LG2G15150 Aethionema arabicum HOM05D003794 ORTHO05D004464 4.3e-07 57.8 76 42.1
BolC5t31776H Brassica oleracea HOM05D003794 ORTHO05D004464 4.3e-07 57.8 70 42.9
Cpa.g.sc135.30 Carica papaya HOM05D003794 ORTHO05D004464 4.3e-07 57.8 82 45.1
Potri.012G120280 Populus trichocarpa HOM05D003794 ORTHO05D004464 4.3e-07 57.8 76 44.7
VMungo1309G0946 Vigna mungo HOM05D003794 ORTHO05D004464 5.6e-07 57.4 76 43.4
Sabra06G0010100 Salix brachista HOM05D003794 ORTHO05D004464 7.3e-07 57.0 76 39.5
Manes.16G059600 Manihot esculenta HOM05D003794 ORTHO05D004464 9.6e-07 56.6 83 41.0
Sabra15G0137000 Salix brachista HOM05D003794 ORTHO05D004464 1.2e-06 56.2 76 42.1
Potri.015G120000 Populus trichocarpa HOM05D003794 ORTHO05D004464 1.6e-06 55.8 77 39.0
THA.LOC104798619 Tarenaya hassleriana HOM05D003794 ORTHO05D004464 1.6e-06 55.8 78 43.6
Potri.015G118800 Populus trichocarpa HOM05D003794 ORTHO05D004464 2.1e-06 55.5 77 39.0
Solyc02g031740.3 Solanum lycopersicum HOM05D003794 ORTHO05D004464 2.8e-06 55.1 76 43.4
Migut.E00890 Erythranthe guttata HOM05D003794 ORTHO05D004464 4.7e-06 54.3 26 80.8
Migut.E01640 Erythranthe guttata HOM05D003794 ORTHO05D004464 4.7e-06 54.3 26 80.8
MBI18_g03837_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D004464 4.7e-06 54.3 76 39.5
MD10G1234200 Malus domestica HOM05D003794 ORTHO05D004464 6.2e-06 53.9 66 45.5


User provided reference genes

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