Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C001128.2 Cucumis melo HOM05D006713 ORTHO05D008601 5.5e-42 173.7 78 100.0
CsaV3_6G012990 Cucumis sativus L. HOM05D006713 ORTHO05D008601 5.7e-39 163.7 78 94.9
ClCG02G017610 Citrullus lanatus HOM05D006713 ORTHO05D008601 2.8e-38 161.4 78 93.6
Sed0026559 Sechium edule HOM05D006713 ORTHO05D008601 5.3e-37 157.1 78 91.0
Manes.12G089598 Manihot esculenta HOM05D006713 ORTHO05D008601 7.2e-34 146.7 79 83.5
QL02p049491 Quercus lobata HOM05D006713 ORTHO05D008601 4.7e-33 144.1 78 84.6
QL08p038662 Quercus lobata HOM05D006713 ORTHO05D008601 4.7e-33 144.1 78 84.6
CiPaw.03G176500 Carya illinoinensis HOM05D006713 ORTHO05D008601 6.1e-33 143.7 78 83.3
FAN05G2673 Fragaria x ananassa HOM05D006713 ORTHO05D008601 2.3e-32 141.7 78 79.5
Hma1.2p1_1201F.1_g266570 Hydrangea macrophylla HOM05D006713 ORTHO05D008601 2.3e-32 141.7 78 80.8
FAN02G3934 Fragaria x ananassa HOM05D006713 ORTHO05D008601 3.0e-32 141.4 78 79.5
FAN09G0901 Fragaria x ananassa HOM05D006713 ORTHO05D008601 3.0e-32 141.4 78 79.5
FvH4_6g26190 Fragaria vesca HOM05D006713 ORTHO05D008601 4.0e-32 141.0 78 79.5
CSS0039998 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 6.8e-32 140.2 78 80.8
Atru.chr6.3001 Acer truncatum HOM05D006713 ORTHO05D008601 8.8e-32 139.8 78 79.5
Lj8A113G48 Lonicera japonica HOM05D006713 ORTHO05D008601 8.8e-32 139.8 78 80.8
RcHm_v2.0_Chr2g0126401 Rosa chinensis HOM05D006713 ORTHO05D008601 8.8e-32 139.8 78 80.8
Thecc.02G179100 Theobroma cacao HOM05D006713 ORTHO05D008601 8.8e-32 139.8 78 79.5
TAR235G0002 Trochodendron aralioides HOM05D006713 ORTHO05D008601 1.5e-31 139.0 78 78.2
Actinidia09856 Actinidia chinensis HOM05D006713 ORTHO05D008601 2.0e-31 138.7 78 79.5
Ciclev10015547m.g Citrus clementina HOM05D006713 ORTHO05D008601 2.0e-31 138.7 78 78.2
Eucgr.A01814 Eucalyptus grandis HOM05D006713 ORTHO05D008601 2.0e-31 138.7 78 78.2
Glyma.12G203966 Glycine max HOM05D006713 ORTHO05D008601 2.6e-31 138.3 78 78.2
Glyma.13G297500 Glycine max HOM05D006713 ORTHO05D008601 2.6e-31 138.3 78 78.2
CANSAT78G0617 Cannabis sativa HOM05D006713 ORTHO05D008601 3.4e-31 137.9 78 79.5
arahy.Tifrunner.gnm1.ann1.FW5TAU Arachis hypogaea HOM05D006713 ORTHO05D008601 4.4e-31 137.5 79 78.5
arahy.Tifrunner.gnm1.ann1.Q4ZJSX Arachis hypogaea HOM05D006713 ORTHO05D008601 4.4e-31 137.5 79 78.5
CSS0037354 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 4.4e-31 137.5 78 79.5
Duzib052G0863 Durio zibethinus HOM05D006713 ORTHO05D008601 4.4e-31 137.5 78 78.2
HanXRQChr17g0556501 Helianthus annuus HOM05D006713 ORTHO05D008601 4.4e-31 137.5 78 82.1
GSVIVG01020539001 Vitis vinifera HOM05D006713 ORTHO05D008601 4.4e-31 137.5 78 80.8
Aqoxy1G02470 Aquilegia oxysepala HOM05D006713 ORTHO05D008601 5.7e-31 137.1 78 79.5
MBI06_g06484_MAGBIO Magnolia biondii HOM05D006713 ORTHO05D008601 7.5e-31 136.7 78 79.5
Sabra13G0111600 Salix brachista HOM05D006713 ORTHO05D008601 7.5e-31 136.7 79 81.0
Peaxi162Scf00132g00240 Petunia axillaris HOM05D006713 ORTHO05D008601 9.8e-31 136.3 78 78.2
Potri.013G132100 Populus trichocarpa HOM05D006713 ORTHO05D008601 9.8e-31 136.3 79 81.0
Cc05_g07100 Coffea canephora HOM05D006713 ORTHO05D008601 1.3e-30 136.0 78 76.9
Ah.01g015180 Amaranthus hybridus HOM05D006713 ORTHO05D008601 2.8e-30 134.8 78 78.2
MSTRG.12823 Avicennia marina HOM05D006713 ORTHO05D008601 2.8e-30 134.8 78 78.2
Cpa.g.sc34.156 Carica papaya HOM05D006713 ORTHO05D008601 2.8e-30 134.8 78 76.9
Phvul.005G104000 Phaseolus vulgaris HOM05D006713 ORTHO05D008601 3.7e-30 134.4 78 76.9
TWI18G1058 Tripterygium wilfordii HOM05D006713 ORTHO05D008601 3.7e-30 134.4 78 76.9
EL10Ac9g20760 Beta vulgaris HOM05D006713 ORTHO05D008601 4.8e-30 134.0 78 75.6
Lsat_1_v5_gn_8_133201 Lactuca sativa HOM05D006713 ORTHO05D008601 4.8e-30 134.0 78 79.5
Gohir.D02G180200 Gossypium hirsutum HOM05D006713 ORTHO05D008601 6.3e-30 133.7 78 74.4
Gorai.005G201900 Gossypium raimondii HOM05D006713 ORTHO05D008601 6.3e-30 133.7 78 74.4
MD17G1241000 Malus domestica HOM05D006713 ORTHO05D008601 6.3e-30 133.7 79 78.5
VMungo1080G0618 Vigna mungo HOM05D006713 ORTHO05D008601 6.3e-30 133.7 78 76.9
DCAR_021241 Daucus carota HOM05D006713 ORTHO05D008601 8.3e-30 133.3 78 73.1
ECA234G3347 Erigeron canadensis HOM05D006713 ORTHO05D008601 8.3e-30 133.3 78 76.9
Migut.H01188 Erythranthe guttata HOM05D006713 ORTHO05D008601 1.1e-29 132.9 78 76.9
Gohir.A03G157000 Gossypium hirsutum HOM05D006713 ORTHO05D008601 1.1e-29 132.9 78 74.4
Lj3g0026133 Lotus japonicus HOM05D006713 ORTHO05D008601 1.1e-29 132.9 78 78.2
vmacro12297 Vaccinium macrocarpon HOM05D006713 ORTHO05D008601 1.1e-29 132.9 78 76.9
AUR62038189 Chenopodium quinoa HOM05D006713 ORTHO05D008601 1.8e-29 132.1 79 78.5
Dinv26425 Davidia involucrata HOM05D006713 ORTHO05D008601 1.8e-29 132.1 78 78.2
AUR62038063 Chenopodium quinoa HOM05D006713 ORTHO05D008601 3.1e-29 131.3 79 78.5
Os06g0342750 Oryza sativa ssp. japonica HOM05D006713 ORTHO05D008601 5.4e-29 130.6 78 71.8
Nn1g06572 Nelumbo nucifera HOM05D006713 ORTHO05D008601 9.1e-29 129.8 78 75.6
CDE10G0241 Ceratophyllum demersum HOM05D006713 ORTHO05D008601 2.0e-28 128.6 78 74.4
Rhsim06G0143600 Rhododendron simsii HOM05D006713 ORTHO05D008601 3.5e-28 127.9 78 74.4
PGSC0003DMG400018345 Solanum tuberosum HOM05D006713 ORTHO05D008601 3.5e-28 127.9 78 74.4
Solyc07g054070.4 Solanum lycopersicum HOM05D006713 ORTHO05D008601 4.5e-28 127.5 78 74.4
Ca_01502_v3 Cicer arietinum L. HOM05D006713 ORTHO05D008601 5.9e-28 127.1 78 70.5
Sc21g0002760 Simmondsia chinensis HOM05D006713 ORTHO05D008601 5.9e-28 127.1 78 69.2
Sopen07g028010 Solanum pennellii HOM05D006713 ORTHO05D008601 5.9e-28 127.1 78 74.4
THA.LOC104815960 Tarenaya hassleriana HOM05D006713 ORTHO05D008601 5.9e-28 127.1 78 73.1
CAN.G248.32 Capsicum annuum HOM05D006713 ORTHO05D008601 1.3e-27 125.9 78 73.1
SalBow1G6029 Salvia bowleyana HOM05D006713 ORTHO05D008601 1.3e-27 125.9 78 71.8
Hund01101 Selenicereus undatus HOM05D006713 ORTHO05D008601 1.3e-27 125.9 76 73.7
Zm00001eb273220 Zea mays HOM05D006713 ORTHO05D008601 1.3e-27 125.9 78 69.2
Medtr2g090335 Medicago truncatula HOM05D006713 ORTHO05D008601 2.2e-27 125.2 78 70.5
unitig_62.g23167 Utricularia gibba HOM05D006713 ORTHO05D008601 3.8e-27 124.4 78 71.8
BcaC07g42233 Brassica carinata HOM05D006713 ORTHO05D008601 5.0e-27 124.0 78 70.5
BcaC07g42238 Brassica carinata HOM05D006713 ORTHO05D008601 5.0e-27 124.0 78 70.5
C08p52690 Brassica napus HOM05D006713 ORTHO05D008601 5.0e-27 124.0 78 70.5
BolC8t52795H Brassica oleracea HOM05D006713 ORTHO05D008601 5.0e-27 124.0 78 70.5
Sp1g02570 Schrenkiella parvula HOM05D006713 ORTHO05D008601 5.0e-27 124.0 78 71.8
HPP92_023892 Vanilla planifolia HOM05D006713 ORTHO05D008601 5.0e-27 124.0 78 67.9
Aa31LG1G20990 Aethionema arabicum HOM05D006713 ORTHO05D008601 8.5e-27 123.2 78 71.8
AL1G13180 Arabidopsis lyrata HOM05D006713 ORTHO05D008601 8.5e-27 123.2 78 71.8
Lalb_Chr14g0366891 Lupinus albus HOM05D006713 ORTHO05D008601 8.5e-27 123.2 79 70.9
ATR0665G517 Amborella trichopoda HOM05D006713 ORTHO05D008601 1.1e-26 122.9 78 67.9
AT1G03687 Arabidopsis thaliana HOM05D006713 ORTHO05D008601 1.1e-26 122.9 78 70.5
CARHR003020 Cardamine hirsuta HOM05D006713 ORTHO05D008601 1.1e-26 122.9 78 71.8
Thhalv10007899m.g Eutrema salsugineum HOM05D006713 ORTHO05D008601 1.1e-26 122.9 78 70.5
Psat5g271440 Pisum sativum HOM05D006713 ORTHO05D008601 1.1e-26 122.9 78 70.5
A09p68250 Brassica napus HOM05D006713 ORTHO05D008601 1.5e-26 122.5 78 69.2
BraA09t42160Z Brassica rapa HOM05D006713 ORTHO05D008601 1.5e-26 122.5 78 69.2
HPP92_023829 Vanilla planifolia HOM05D006713 ORTHO05D008601 1.5e-26 122.5 78 66.7
Carub.0001s0279 Capsella rubella HOM05D006713 ORTHO05D008601 4.2e-26 120.9 78 70.5
SMO117G0197 Selaginella moellendorffii HOM05D006713 ORTHO05D008601 1.7e-22 109.0 74 62.2
AagrBONN_evm.TU.Sc2ySwM_117.1346 Anthoceros agrestis HOM05D006713 ORTHO05D008601 6.3e-22 107.1 73 60.3
Mapoly0088s0019 Marchantia polymorpha HOM05D006713 ORTHO05D008601 5.0e-19 97.4 73 56.2
SalBow1G1793 Salvia bowleyana HOM05D006713 ORTHO05D008601 1.6e-17 92.4 58 67.2
PSO541G1719 Papaver somniferum HOM05D006713 ORTHO05D008601 9.8e-15 83.2 50 80.0
PSO675G6747 Papaver somniferum HOM05D006713 ORTHO05D008601 9.8e-15 83.2 50 80.0
Nitab4.5_0000512g0100 Nicotiana tabacum HOM05D006713 ORTHO05D008601 2.9e-14 81.6 50 80.0
Nitab4.5_0002169g0110 Nicotiana tabacum HOM05D006713 ORTHO05D008601 2.9e-14 81.6 50 80.0
CBR_g35040 Chara braunii HOM05D006713 ORTHO05D008601 9.2e-13 76.6 75 45.3
Haze_13156 Corylus avellana HOM05D006713 ORTHO05D008601 3.1e-08 61.6 32 71.9
Prupe.3G137200 Prunus persica HOM05D006713 ORTHO05D008601 6.8e-08 60.5 32 68.8


User provided reference genes

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