Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C001121.2 Cucumis melo HOM05D004697 ORTHO05D006015 1.9e-43 178.7 86 100.0
CsaV3_7G032920 Cucumis sativus L. HOM05D004697 ORTHO05D006015 3.2e-35 151.4 73 98.6
ClCG09G002390 Citrullus lanatus HOM05D004697 ORTHO05D006015 7.2e-35 150.2 76 93.4
Aqoxy7G01886 Aquilegia oxysepala HOM05D004697 ORTHO05D006015 2.0e-32 142.1 74 90.5
Cfa002045 Carpinus fangiana HOM05D004697 ORTHO05D006015 2.6e-32 141.7 74 91.9
CANSAT35G0283 Cannabis sativa HOM05D004697 ORTHO05D006015 3.3e-32 141.4 72 93.1
MD17G1198700 Malus domestica HOM05D004697 ORTHO05D006015 3.3e-32 141.4 74 91.9
Sed0000376 Sechium edule HOM05D004697 ORTHO05D006015 3.3e-32 141.4 74 90.5
CSS0027866 Camellia sinensis var. sinensis HOM05D004697 ORTHO05D006015 7.4e-32 140.2 74 90.5
Cpa.g.sc18.109 Carica papaya HOM05D004697 ORTHO05D006015 9.7e-32 139.8 74 90.5
TWI18G0273 Tripterygium wilfordii HOM05D004697 ORTHO05D006015 9.7e-32 139.8 74 89.2
Dinv38068 Davidia involucrata HOM05D004697 ORTHO05D006015 1.3e-31 139.4 74 89.2
Oeu021953.1 Olea europaea HOM05D004697 ORTHO05D006015 1.3e-31 139.4 74 86.5
ECA232G0480 Erigeron canadensis HOM05D004697 ORTHO05D006015 1.7e-31 139.0 72 91.7
MD09G1216600 Malus domestica HOM05D004697 ORTHO05D006015 1.7e-31 139.0 74 90.5
TAR625G1470 Trochodendron aralioides HOM05D004697 ORTHO05D006015 1.7e-31 139.0 72 91.7
GSVIVG01017171001 Vitis vinifera HOM05D004697 ORTHO05D006015 1.7e-31 139.0 74 90.5
Haze_16466 Corylus avellana HOM05D004697 ORTHO05D006015 2.2e-31 138.7 74 90.5
Hund06596 Selenicereus undatus HOM05D004697 ORTHO05D006015 2.2e-31 138.7 72 88.9
CiPaw.02G153000 Carya illinoinensis HOM05D004697 ORTHO05D006015 2.8e-31 138.3 74 86.5
Lsat_1_v5_gn_4_104321 Lactuca sativa HOM05D004697 ORTHO05D006015 2.8e-31 138.3 72 91.7
TAR626G0416 Trochodendron aralioides HOM05D004697 ORTHO05D006015 2.8e-31 138.3 74 87.8
DCAR_016232 Daucus carota HOM05D004697 ORTHO05D006015 3.7e-31 137.9 74 89.2
MSTRG.4725 Avicennia marina HOM05D004697 ORTHO05D006015 4.8e-31 137.5 72 88.9
COL.COLO4_30318 Corchorus olitorius HOM05D004697 ORTHO05D006015 4.8e-31 137.5 74 87.8
Rhsim12G0195700 Rhododendron simsii HOM05D004697 ORTHO05D006015 4.8e-31 137.5 74 87.8
Actinidia16015 Actinidia chinensis HOM05D004697 ORTHO05D006015 6.3e-31 137.1 74 86.5
Lj9C505T11 Lonicera japonica HOM05D004697 ORTHO05D006015 8.2e-31 136.7 74 85.1
Prupe.3G075300 Prunus persica HOM05D004697 ORTHO05D006015 8.2e-31 136.7 74 87.8
RcHm_v2.0_Chr2g0137261 Rosa chinensis HOM05D004697 ORTHO05D006015 8.2e-31 136.7 74 90.5
vmacro16938 Vaccinium macrocarpon HOM05D004697 ORTHO05D006015 8.2e-31 136.7 74 87.8
Peaxi162Scf00015g00230 Petunia axillaris HOM05D004697 ORTHO05D006015 1.1e-30 136.3 72 90.3
Potri.001G177000 Populus trichocarpa HOM05D004697 ORTHO05D006015 1.1e-30 136.3 72 90.3
CiPaw.01G241200 Carya illinoinensis HOM05D004697 ORTHO05D006015 1.4e-30 136.0 74 87.8
FvH4_6g31270 Fragaria vesca HOM05D004697 ORTHO05D006015 1.4e-30 136.0 74 89.2
FAN02G0624 Fragaria x ananassa HOM05D004697 ORTHO05D006015 1.4e-30 136.0 74 89.2
FAN05G1321 Fragaria x ananassa HOM05D004697 ORTHO05D006015 1.4e-30 136.0 74 89.2
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.4e-30 136.0 74 89.2
Manes.11G050800 Manihot esculenta HOM05D004697 ORTHO05D006015 1.4e-30 136.0 73 90.4
Ciclev10025775m.g Citrus clementina HOM05D004697 ORTHO05D006015 1.8e-30 135.6 74 87.8
Cc04_g03660 Coffea canephora HOM05D004697 ORTHO05D006015 1.8e-30 135.6 72 87.5
FAN09G1585 Fragaria x ananassa HOM05D004697 ORTHO05D006015 1.8e-30 135.6 74 87.8
Hund00582 Selenicereus undatus HOM05D004697 ORTHO05D006015 2.4e-30 135.2 74 87.8
QL05p025707 Quercus lobata HOM05D004697 ORTHO05D006015 3.1e-30 134.8 74 86.5
TAR383G0670 Trochodendron aralioides HOM05D004697 ORTHO05D006015 3.1e-30 134.8 76 84.2
Actinidia08826 Actinidia chinensis HOM05D004697 ORTHO05D006015 4.1e-30 134.4 74 83.8
Ca_20414_v3 Cicer arietinum L. HOM05D004697 ORTHO05D006015 4.1e-30 134.4 74 86.5
Sabra01G0149200 Salix brachista HOM05D004697 ORTHO05D006015 4.1e-30 134.4 74 86.5
SalBow2G0681 Salvia bowleyana HOM05D004697 ORTHO05D006015 4.1e-30 134.4 72 88.9
vmacro16936 Vaccinium macrocarpon HOM05D004697 ORTHO05D006015 4.1e-30 134.4 73 87.7
arahy.Tifrunner.gnm1.ann1.3I1ZSD Arachis hypogaea HOM05D004697 ORTHO05D006015 5.3e-30 134.0 74 85.1
arahy.Tifrunner.gnm1.ann1.UVA1XC Arachis hypogaea HOM05D004697 ORTHO05D006015 5.3e-30 134.0 74 85.1
Duzib235G0952 Durio zibethinus HOM05D004697 ORTHO05D006015 5.3e-30 134.0 74 85.1
Manes.04G120500 Manihot esculenta HOM05D004697 ORTHO05D006015 5.3e-30 134.0 73 89.0
Nitab4.5_0002424g0030 Nicotiana tabacum HOM05D004697 ORTHO05D006015 5.3e-30 134.0 72 87.5
Nitab4.5_0005784g0020 Nicotiana tabacum HOM05D004697 ORTHO05D006015 5.3e-30 134.0 72 88.9
Lj5A64T48 Lonicera japonica HOM05D004697 ORTHO05D006015 7.0e-30 133.7 74 85.1
Psat7g253520 Pisum sativum HOM05D004697 ORTHO05D006015 7.0e-30 133.7 74 83.8
PGR102G0607 Punica granatum HOM05D004697 ORTHO05D006015 7.0e-30 133.7 72 86.1
HanXRQChr16g0500731 Helianthus annuus HOM05D004697 ORTHO05D006015 9.1e-30 133.3 72 88.9
Zm00001eb122460 Zea mays HOM05D004697 ORTHO05D006015 9.1e-30 133.3 72 90.3
Eucgr.F02571 Eucalyptus grandis HOM05D004697 ORTHO05D006015 1.2e-29 132.9 74 85.1
Medtr4g011820 Medicago truncatula HOM05D004697 ORTHO05D006015 1.2e-29 132.9 74 83.8
PSO063G6298 Papaver somniferum HOM05D004697 ORTHO05D006015 1.2e-29 132.9 72 87.5
PSO782G4365 Papaver somniferum HOM05D004697 ORTHO05D006015 1.2e-29 132.9 72 87.5
Solyc03g120450.4 Solanum lycopersicum HOM05D004697 ORTHO05D006015 1.6e-29 132.5 72 87.5
Sopen03g039330 Solanum pennellii HOM05D004697 ORTHO05D006015 1.6e-29 132.5 72 87.5
Zm00001eb336900 Zea mays HOM05D004697 ORTHO05D006015 1.6e-29 132.5 72 90.3
Migut.D01039 Erythranthe guttata HOM05D004697 ORTHO05D006015 2.0e-29 132.1 72 86.1
FAN14G5909 Fragaria x ananassa HOM05D004697 ORTHO05D006015 2.0e-29 132.1 74 87.8
Lj3g0021181 Lotus japonicus HOM05D004697 ORTHO05D006015 2.0e-29 132.1 74 85.1
Lalb_Chr04g0262581 Lupinus albus HOM05D004697 ORTHO05D006015 2.0e-29 132.1 74 86.5
HPP92_000674 Vanilla planifolia HOM05D004697 ORTHO05D006015 2.6e-29 131.7 72 84.7
AUR62011602 Chenopodium quinoa HOM05D004697 ORTHO05D006015 3.5e-29 131.3 72 86.1
AUR62016417 Chenopodium quinoa HOM05D004697 ORTHO05D006015 3.5e-29 131.3 72 86.1
Glyma.13G361500 Glycine max HOM05D004697 ORTHO05D006015 3.5e-29 131.3 74 85.1
Gohir.D05G127800 Gossypium hirsutum HOM05D004697 ORTHO05D006015 3.5e-29 131.3 74 85.1
Gorai.009G132000 Gossypium raimondii HOM05D004697 ORTHO05D006015 3.5e-29 131.3 74 85.1
VMungo1080G0743 Vigna mungo HOM05D004697 ORTHO05D006015 3.5e-29 131.3 74 83.8
Glyma.15G012300 Glycine max HOM05D004697 ORTHO05D006015 4.5e-29 131.0 74 83.8
Thecc.06G081300 Theobroma cacao HOM05D004697 ORTHO05D006015 4.5e-29 131.0 74 85.1
Thhalv10018674m.g Eutrema salsugineum HOM05D004697 ORTHO05D006015 7.7e-29 130.2 72 84.7
Gohir.A05G126900 Gossypium hirsutum HOM05D004697 ORTHO05D006015 7.7e-29 130.2 74 83.8
Hma1.2p1_0682F.1_g202560 Hydrangea macrophylla HOM05D004697 ORTHO05D006015 7.7e-29 130.2 74 83.8
Lalb_Chr25g0279581 Lupinus albus HOM05D004697 ORTHO05D006015 1.7e-28 129.0 72 86.1
MBI04_g11925_MAGBIO Magnolia biondii HOM05D004697 ORTHO05D006015 2.9e-28 128.3 72 83.3
Phvul.005G173300 Phaseolus vulgaris HOM05D004697 ORTHO05D006015 2.9e-28 128.3 72 86.1
Ah.01g021080 Amaranthus hybridus HOM05D004697 ORTHO05D006015 3.8e-28 127.9 72 83.3
ATR0071G006 Amborella trichopoda HOM05D004697 ORTHO05D006015 3.8e-28 127.9 72 81.9
MELO3C023373.2 Cucumis melo HOM05D004697 ORTHO05D006015 5.0e-28 127.5 60 98.3
Sc10g0005480 Simmondsia chinensis HOM05D004697 ORTHO05D006015 5.0e-28 127.5 74 83.8
Aa31LG4G630 Aethionema arabicum HOM05D004697 ORTHO05D006015 6.5e-28 127.1 74 81.1
CDE01G0614 Ceratophyllum demersum HOM05D004697 ORTHO05D006015 6.5e-28 127.1 72 81.9
SGA_v2.0_scaffold279G46822 Striga asiatica HOM05D004697 ORTHO05D006015 6.5e-28 127.1 72 83.3
Carub.0002s2721 Capsella rubella HOM05D004697 ORTHO05D006015 8.5e-28 126.7 72 81.9
Sp5g35450 Schrenkiella parvula HOM05D004697 ORTHO05D006015 8.5e-28 126.7 72 81.9
THA.LOC104808212 Tarenaya hassleriana HOM05D004697 ORTHO05D006015 1.5e-27 125.9 72 81.9
BcaB05g25274 Brassica carinata HOM05D004697 ORTHO05D006015 1.9e-27 125.6 72 81.9
Os01g0178000 Oryza sativa ssp. japonica HOM05D004697 ORTHO05D006015 2.5e-27 125.2 72 80.6
BcaC03g15980 Brassica carinata HOM05D004697 ORTHO05D006015 3.2e-27 124.8 73 79.5
A02p23620 Brassica napus HOM05D004697 ORTHO05D006015 3.2e-27 124.8 73 79.5
C02p37380 Brassica napus HOM05D004697 ORTHO05D006015 3.2e-27 124.8 73 79.5
BraA02t07355Z Brassica rapa HOM05D004697 ORTHO05D006015 3.2e-27 124.8 73 79.5
AL2G41140 Arabidopsis lyrata HOM05D004697 ORTHO05D006015 5.5e-27 124.0 72 80.6
AT1G80360 Arabidopsis thaliana HOM05D004697 ORTHO05D006015 7.2e-27 123.6 72 80.6
A07p45300 Brassica napus HOM05D004697 ORTHO05D006015 1.2e-26 122.9 73 80.8
BolC2t09749H Brassica oleracea HOM05D004697 ORTHO05D006015 1.6e-26 122.5 73 78.1
CAN.G438.43 Capsicum annuum HOM05D004697 ORTHO05D006015 2.7e-26 121.7 72 81.9
CARHR074150 Cardamine hirsuta HOM05D004697 ORTHO05D006015 2.7e-26 121.7 72 81.9
Sed0004608 Sechium edule HOM05D004697 ORTHO05D006015 2.7e-26 121.7 59 96.6
BcaC08g45305 Brassica carinata HOM05D004697 ORTHO05D006015 3.6e-26 121.3 72 80.6
C06p29100 Brassica napus HOM05D004697 ORTHO05D006015 3.6e-26 121.3 72 80.6
BolC6t38073H Brassica oleracea HOM05D004697 ORTHO05D006015 3.6e-26 121.3 72 80.6
BcaC08g47581 Brassica carinata HOM05D004697 ORTHO05D006015 4.7e-26 120.9 72 80.6
A07p26630 Brassica napus HOM05D004697 ORTHO05D006015 4.7e-26 120.9 72 80.6
BolC6t40428H Brassica oleracea HOM05D004697 ORTHO05D006015 4.7e-26 120.9 72 80.6
BraA07t30306Z Brassica rapa HOM05D004697 ORTHO05D006015 4.7e-26 120.9 72 80.6
BcaB02g08691 Brassica carinata HOM05D004697 ORTHO05D006015 8.0e-26 120.2 72 80.6
C06p54160 Brassica napus HOM05D004697 ORTHO05D006015 8.0e-26 120.2 72 80.6
BraA07t32034Z Brassica rapa HOM05D004697 ORTHO05D006015 8.0e-26 120.2 72 80.6
BcaB02g07280 Brassica carinata HOM05D004697 ORTHO05D006015 2.3e-25 118.6 72 79.2
CANSAT25G3819 Cannabis sativa HOM05D004697 ORTHO05D006015 5.2e-25 117.5 72 75.0
Rhsim06G0149600 Rhododendron simsii HOM05D004697 ORTHO05D000003 5.2e-25 117.5 72 75.0
Thecc.09G144900 Theobroma cacao HOM05D004697 ORTHO05D006015 1.2e-24 116.3 72 75.0
Mapoly0192s0009 Marchantia polymorpha HOM05D004697 ORTHO05D006015 1.5e-24 115.9 74 75.7
SMO196G0040 Selaginella moellendorffii HOM05D004697 ORTHO05D006015 1.5e-24 115.9 73 72.6
GSVIVG01035717001 Vitis vinifera HOM05D004697 ORTHO05D006015 2.0e-24 115.5 74 70.3
vmacro05442 Vaccinium macrocarpon HOM05D004697 ORTHO05D006015 7.5e-24 113.6 72 72.2
CSS0021419 Camellia sinensis var. sinensis HOM05D004697 ORTHO05D006015 2.2e-23 112.1 74 73.0
Dinv30207 Davidia involucrata HOM05D004697 ORTHO05D006015 2.2e-23 112.1 72 72.2
Pp3c20_8270 Physcomitrium patens HOM05D004697 ORTHO05D006015 2.2e-23 112.1 72 72.2
Dinv30209 Davidia involucrata HOM05D004697 ORTHO05D006015 1.2e-21 106.3 70 74.3
EL10Ac9g21973 Beta vulgaris HOM05D004697 ORTHO05D006015 7.7e-21 103.6 52 90.4
unitig_62.g23774 Utricularia gibba HOM05D004697 ORTHO05D006015 2.2e-20 102.1 52 86.5
VMungo1127G2122 Vigna mungo HOM05D004697 ORTHO05D004810 2.2e-20 102.1 61 80.3
Nn2g11851 Nelumbo nucifera HOM05D004697 ORTHO05D006015 1.5e-19 99.4 52 88.5
BcaC05g29157 Brassica carinata HOM05D004697 ORTHO05D002680 2.1e-18 95.5 51 84.3
BolC5t34080H Brassica oleracea HOM05D004697 ORTHO05D002680 2.1e-18 95.5 51 84.3
SEGI_40049 Sequoiadendron giganteum HOM05D004697 ORTHO05D006015 3.6e-18 94.7 54 81.5
BolC3t14325H Brassica oleracea HOM05D004697 ORTHO05D002680 3.0e-17 91.7 53 79.2
SHI09701 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-16 89.7 51 78.4
MBI04_g47371_MAGBIO Magnolia biondii HOM05D004697 ORTHO05D006015 2.6e-16 88.6 74 63.5
C05p54140 Brassica napus HOM05D004697 ORTHO05D002680 5.9e-13 77.4 84 53.6
C02p30770 Brassica napus HOM05D004697 ORTHO05D006015 1.3e-12 76.3 40 87.5
Cre01.g051800 Chlamydomonas reinhardtii HOM05D004697 ORTHO05D006015 1.5e-11 72.8 72 47.2
Dinv30538 Davidia involucrata HOM05D004697 ORTHO05D006015 9.5e-11 70.1 34 91.2


User provided reference genes

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