Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.1e-46 188.7 97 100.0
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 7.8e-46 186.8 96 99.0
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 1.5e-41 172.6 96 92.7
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 2.9e-40 168.3 96 89.6
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.0e-37 158.3 81 100.0
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.9e-28 129.0 97 70.1
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 2.4e-26 122.1 121 57.0
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 7.1e-23 110.5 94 62.8
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 9.3e-23 110.2 91 58.2
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.7e-22 108.6 95 58.9
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 4.6e-22 107.8 96 55.2
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 6.0e-22 107.5 92 57.6
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 2.3e-21 105.5 93 55.9
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 3.9e-21 104.8 96 59.4
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 5.1e-21 104.4 93 60.2
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 5.1e-21 104.4 88 54.5
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 6.7e-21 104.0 98 55.1
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 8.7e-21 103.6 92 56.5
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.5e-20 102.8 98 56.1
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.5e-20 102.8 96 55.2
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 1.9e-20 102.4 101 53.5
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.9e-20 102.4 76 63.2
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 2.5e-20 102.1 95 52.6
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 3.3e-20 101.7 103 52.4
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.3e-20 101.7 101 54.5
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 5.6e-20 100.9 102 51.0
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 9.6e-20 100.1 98 52.0
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.3e-19 99.8 98 58.2
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.1e-19 99.0 93 58.1
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 2.1e-19 99.0 91 54.9
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.8e-19 98.6 77 61.0
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.8e-19 97.8 81 61.7
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.8e-19 97.8 81 61.7
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.4e-18 96.3 101 52.5
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.8e-18 95.9 99 50.5
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.4e-18 95.5 81 59.3
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 2.4e-18 95.5 99 50.5
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 2.4e-18 95.5 99 50.5
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 3.1e-18 95.1 81 58.0
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 3.1e-18 95.1 81 59.3
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 3.1e-18 95.1 92 48.9
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.0e-18 94.7 81 58.0
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 4.0e-18 94.7 77 58.4
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 5.3e-18 94.4 85 56.5
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 9.0e-18 93.6 99 49.5
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 9.0e-18 93.6 89 53.9
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 9.0e-18 93.6 81 60.5
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.5e-17 92.8 81 56.8
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 1.5e-17 92.8 96 52.1
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.0e-17 92.4 92 45.7
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 2.6e-17 92.0 92 50.0
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 4.5e-17 91.3 94 48.9
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 4.5e-17 91.3 91 48.4
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 5.8e-17 90.9 92 44.6
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.6e-17 90.5 96 54.2
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.7e-16 89.4 96 51.0
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.2e-16 89.0 92 43.5
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 2.2e-16 89.0 77 53.2
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.2e-16 89.0 77 58.4
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 3.8e-16 88.2 92 51.1
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 4.9e-16 87.8 97 50.5
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.5e-16 87.4 97 50.5
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.4e-15 86.3 97 50.5
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.9e-15 85.9 100 50.0
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 1.9e-15 85.9 99 46.5
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 2.5e-15 85.5 94 48.9
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 4.2e-15 84.7 90 48.9
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 4.2e-15 84.7 75 57.3
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 9.3e-15 83.6 81 50.6
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 3.5e-14 81.6 72 51.4
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 3.5e-14 81.6 101 39.6
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 3.5e-14 81.6 85 48.2
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 4.6e-14 81.3 75 53.3
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 4.6e-14 81.3 99 45.5
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 4.6e-14 81.3 90 44.4
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 6.0e-14 80.9 81 43.2
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 6.0e-14 80.9 101 42.6
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.0e-13 80.1 95 47.4
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.0e-13 80.1 81 44.4
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-13 79.7 85 47.1
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.8e-13 79.3 73 50.7
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 3.0e-13 78.6 98 41.8
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 8.7e-13 77.0 94 38.3
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 8.7e-13 77.0 85 50.6
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 8.7e-13 77.0 95 44.2
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 1.1e-12 76.6 88 44.3
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.1e-12 76.6 80 46.2
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 1.1e-12 76.6 100 44.0
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.9e-12 75.9 98 43.9
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.9e-12 75.9 100 44.0
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 2.5e-12 75.5 93 49.5
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.5e-12 75.5 88 48.9
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 3.3e-12 75.1 82 45.1
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 3.3e-12 75.1 76 47.4
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 3.3e-12 75.1 76 47.4
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 3.3e-12 75.1 86 45.3
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 3.3e-12 75.1 82 45.1
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 4.3e-12 74.7 76 47.4
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 5.7e-12 74.3 76 47.4
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 5.7e-12 74.3 81 45.7
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 5.7e-12 74.3 93 40.9
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.6e-11 72.8 101 40.6
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.6e-11 72.8 101 40.6
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.6e-11 72.8 108 41.7
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 2.8e-11 72.0 95 41.1
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.8e-11 72.0 82 43.9
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 2.8e-11 72.0 97 38.1
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 3.7e-11 71.6 97 38.1
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 3.7e-11 71.6 60 58.3
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 4.8e-11 71.2 99 40.4
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 4.8e-11 71.2 102 40.2
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 6.3e-11 70.9 85 42.4
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 8.2e-11 70.5 75 42.7
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 8.2e-11 70.5 102 38.2
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.8e-10 69.3 93 39.8
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 3.1e-10 68.6 101 39.6
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 6.9e-10 67.4 86 44.2
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.6e-09 65.5 82 40.2
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.3e-08 63.2 82 39.0
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 3.8e-08 61.6 83 42.2
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.1e-07 60.1 82 36.6
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 9.3e-07 57.0 67 41.8
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 2.1e-06 55.8 39 61.5
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.7e-06 55.5 103 41.7
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 2.7e-06 55.5 89 36.0
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.6e-06 55.1 84 35.7


User provided reference genes

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