Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 3.9e-15 83.6 41 100.0
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 1.1e-14 82.0 41 97.6
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 3.7e-13 77.0 39 92.3
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 2.9e-10 67.4 38 84.2
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 8.5e-10 65.9 40 80.0
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.5e-09 65.1 41 78.0
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.5e-09 65.1 39 79.5
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 1.9e-09 64.7 40 80.0
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 1.9e-09 64.7 39 79.5
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 2.5e-09 64.3 39 82.1
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 3.2e-09 63.9 40 75.0
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 3.2e-09 63.9 40 80.0
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 3.2e-09 63.9 39 82.1
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 3.2e-09 63.9 40 75.0
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 3.2e-09 63.9 39 82.1
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 4.2e-09 63.5 40 72.5
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 5.5e-09 63.2 41 70.7
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 5.5e-09 63.2 39 79.5
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 7.2e-09 62.8 40 75.0
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 9.4e-09 62.4 39 79.5
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 9.4e-09 62.4 39 79.5
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 9.4e-09 62.4 39 79.5
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 1.2e-08 62.0 39 76.9
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.2e-08 62.0 40 72.5
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.2e-08 62.0 40 75.0
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.2e-08 62.0 39 79.5
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 1.6e-08 61.6 40 77.5
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 2.1e-08 61.2 40 70.0
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 2.1e-08 61.2 40 70.0
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 2.7e-08 60.8 39 74.4
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 2.7e-08 60.8 39 76.9
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 2.7e-08 60.8 39 76.9
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 2.7e-08 60.8 39 76.9
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 3.6e-08 60.5 39 76.9
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 4.7e-08 60.1 39 76.9
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 6.1e-08 59.7 39 76.9
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 1.4e-07 58.5 40 70.0
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 1.4e-07 58.5 39 71.8
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 1.4e-07 58.5 39 74.4
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 1.4e-07 58.5 39 74.4
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 1.4e-07 58.5 39 71.8
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.8e-07 58.2 39 74.4
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 1.8e-07 58.2 40 67.5
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 2.3e-07 57.8 37 78.4
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 2.3e-07 57.8 37 78.4
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 2.3e-07 57.8 37 78.4
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 2.3e-07 57.8 37 78.4
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 2.3e-07 57.8 37 78.4
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 2.3e-07 57.8 39 69.2
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 2.3e-07 57.8 40 72.5
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 2.3e-07 57.8 41 65.9
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 3.0e-07 57.4 37 75.7
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 3.0e-07 57.4 37 78.4
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 3.0e-07 57.4 37 75.7
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 3.0e-07 57.4 39 71.8
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 3.0e-07 57.4 40 67.5
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 4.0e-07 57.0 40 67.5
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 5.2e-07 56.6 39 69.2
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 5.2e-07 56.6 39 66.7
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 5.2e-07 56.6 39 74.4
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 5.2e-07 56.6 40 67.5
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 5.2e-07 56.6 41 63.4
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 6.7e-07 56.2 37 75.7
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 6.7e-07 56.2 37 75.7
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 6.7e-07 56.2 39 69.2
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 6.7e-07 56.2 39 71.8
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 6.7e-07 56.2 39 66.7
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 8.8e-07 55.8 37 75.7
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 8.8e-07 55.8 37 75.7
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 8.8e-07 55.8 37 75.7
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 8.8e-07 55.8 35 80.0
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 8.8e-07 55.8 37 75.7
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 8.8e-07 55.8 39 69.2
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 8.8e-07 55.8 39 71.8
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 1.1e-06 55.5 37 75.7
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 1.1e-06 55.5 40 67.5
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 1.1e-06 55.5 37 78.4
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 1.1e-06 55.5 40 65.0
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 1.1e-06 55.5 40 65.0
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.5e-06 55.1 37 73.0
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 1.5e-06 55.1 40 67.5
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 1.5e-06 55.1 40 67.5
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 1.5e-06 55.1 39 69.2
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 2.0e-06 54.7 37 75.7
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 2.0e-06 54.7 39 66.7
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 2.0e-06 54.7 37 73.0
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 2.0e-06 54.7 40 65.0
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.6e-06 54.3 39 69.2
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 2.6e-06 54.3 39 69.2
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 2.6e-06 54.3 36 75.0
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 4.4e-06 53.5 37 73.0
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 5.7e-06 53.1 39 66.7
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 5.7e-06 53.1 39 64.1
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 7.5e-06 52.8 40 65.0
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 7.5e-06 52.8 39 61.5
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 9.7e-06 52.4 39 66.7
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 9.7e-06 52.4 40 62.5


User provided reference genes

Program Settings