Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000704.2 Cucumis melo HOM05D003380 ORTHO05D018146 6.7e-41 170.2 86 100.0
ClCG08G012530 Citrullus lanatus HOM05D003380 ORTHO05D004232 1.7e-31 139.0 70 98.6
CsaV3_2G031230 Cucumis sativus L. HOM05D003380 ORTHO05D004232 1.7e-31 139.0 70 98.6
Sed0022704 Sechium edule HOM05D003380 ORTHO05D004232 3.7e-31 137.9 70 97.1
Sed0024231 Sechium edule HOM05D003380 ORTHO05D004232 3.1e-30 134.8 70 95.7
Cfa013309 Carpinus fangiana HOM05D003380 ORTHO05D004232 3.5e-29 131.3 70 91.4
Cpa.g.sc148.3 Carica papaya HOM05D003380 ORTHO05D004232 5.9e-29 130.6 70 91.4
CiPaw.07G209900 Carya illinoinensis HOM05D003380 ORTHO05D004232 7.7e-29 130.2 70 90.0
Duzib168G0804 Durio zibethinus HOM05D003380 ORTHO05D004232 7.7e-29 130.2 70 90.0
Thecc.09G002600 Theobroma cacao HOM05D003380 ORTHO05D004232 7.7e-29 130.2 70 90.0
Cfa010143 Carpinus fangiana HOM05D003380 ORTHO05D004232 1.0e-28 129.8 70 90.0
PGR044G1928 Punica granatum HOM05D003380 ORTHO05D004232 1.3e-28 129.4 70 88.6
Haze_21791 Corylus avellana HOM05D003380 ORTHO05D004232 1.7e-28 129.0 70 90.0
MD08G1124600 Malus domestica HOM05D003380 ORTHO05D004232 1.7e-28 129.0 70 88.6
Ciclev10009349m.g Citrus clementina HOM05D003380 ORTHO05D004232 3.8e-28 127.9 70 87.1
Manes.03G001100 Manihot esculenta HOM05D003380 ORTHO05D004232 3.8e-28 127.9 70 88.6
QL12p025844 Quercus lobata HOM05D003380 ORTHO05D004232 3.8e-28 127.9 69 88.4
CANSAT25G3289 Cannabis sativa HOM05D003380 ORTHO05D004232 5.0e-28 127.5 69 89.9
Duzib150G0262 Durio zibethinus HOM05D003380 ORTHO05D004232 6.5e-28 127.1 70 88.6
DCAR_000674 Daucus carota HOM05D003380 ORTHO05D004232 1.1e-27 126.3 70 87.1
DCAR_004564 Daucus carota HOM05D003380 ORTHO05D004232 1.1e-27 126.3 70 87.1
Gorai.009G069600 Gossypium raimondii HOM05D003380 ORTHO05D004232 1.1e-27 126.3 70 88.6
MD15G1103300 Malus domestica HOM05D003380 ORTHO05D004232 1.1e-27 126.3 68 86.8
ECA240G0102 Erigeron canadensis HOM05D003380 ORTHO05D004232 1.5e-27 125.9 70 87.1
THA.LOC104803586 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 1.5e-27 125.9 67 89.6
Gohir.D05G068600 Gossypium hirsutum HOM05D003380 ORTHO05D004232 2.5e-27 125.2 70 87.1
Prupe.1G456200 Prunus persica HOM05D003380 ORTHO05D004232 2.5e-27 125.2 69 85.5
TWI63G0177 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 2.5e-27 125.2 70 84.3
CiPaw.08G021300 Carya illinoinensis HOM05D003380 ORTHO05D004232 3.2e-27 124.8 70 85.7
THA.LOC104819924 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 4.2e-27 124.4 67 88.1
Gohir.A13G181700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 5.5e-27 124.0 70 85.7
HanXRQChr03g0081271 Helianthus annuus HOM05D003380 ORTHO05D004232 5.5e-27 124.0 68 86.8
TWI34G1105 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 5.5e-27 124.0 70 82.9
Atru.chr13.1615 Acer truncatum HOM05D003380 ORTHO05D004232 7.2e-27 123.6 70 87.1
Atru.chr7.2666 Acer truncatum HOM05D003380 ORTHO05D004232 7.2e-27 123.6 70 87.1
Atru.chr7.2690 Acer truncatum HOM05D003380 ORTHO05D004232 7.2e-27 123.6 70 87.1
Dinv12605 Davidia involucrata HOM05D003380 ORTHO05D004232 7.2e-27 123.6 67 88.1
Oeu021030.1 Olea europaea HOM05D003380 ORTHO05D004232 9.4e-27 123.2 68 88.2
Oeu036948.2 Olea europaea HOM05D003380 ORTHO05D004232 9.4e-27 123.2 67 88.1
TAR636G3035 Trochodendron aralioides HOM05D003380 ORTHO05D004232 9.4e-27 123.2 68 86.8
GSVIVG01032253001 Vitis vinifera HOM05D003380 ORTHO05D004232 1.2e-26 122.9 67 86.6
A03p60610 Brassica napus HOM05D003380 ORTHO05D004232 1.6e-26 122.5 70 85.7
C07p58510 Brassica napus HOM05D003380 ORTHO05D004232 1.6e-26 122.5 70 85.7
BraA03t15102Z Brassica rapa HOM05D003380 ORTHO05D004232 1.6e-26 122.5 70 85.7
Dinv26471 Davidia involucrata HOM05D003380 ORTHO05D004232 1.6e-26 122.5 67 88.1
Gohir.A05G066200 Gossypium hirsutum HOM05D003380 ORTHO05D004232 1.6e-26 122.5 70 85.7
Gohir.D13G185700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 1.6e-26 122.5 70 84.3
Gorai.013G211700 Gossypium raimondii HOM05D003380 ORTHO05D004232 1.6e-26 122.5 70 84.3
Hma1.2p1_0443F.1_g154000 Hydrangea macrophylla HOM05D003380 ORTHO05D004232 1.6e-26 122.5 70 84.3
GSVIVG01035567001 Vitis vinifera HOM05D003380 ORTHO05D004232 1.6e-26 122.5 70 82.9
QL01p024860 Quercus lobata HOM05D003380 ORTHO05D018146 2.1e-26 122.1 69 85.5
TAR383G0138 Trochodendron aralioides HOM05D003380 ORTHO05D004232 2.1e-26 122.1 68 85.3
Actinidia02482 Actinidia chinensis HOM05D003380 ORTHO05D004232 2.7e-26 121.7 67 86.6
Potri.006G077900 Populus trichocarpa HOM05D003380 ORTHO05D004232 2.7e-26 121.7 67 86.6
AL7G20780 Arabidopsis lyrata HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
AT4G31300 Arabidopsis thaliana HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
BcaB03g12688 Brassica carinata HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
BcaC01g01103 Brassica carinata HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
BcaC09g51907 Brassica carinata HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
BcaNung05317 Brassica carinata HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
A01p07000 Brassica napus HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
A08p18700 Brassica napus HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
C01p07730 Brassica napus HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
C03p88100 Brassica napus HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
BolC1t00756H Brassica oleracea HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
BolC3t21119H Brassica oleracea HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
BraA01t00651Z Brassica rapa HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
BraA08t33831Z Brassica rapa HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
Carub.0007s0926 Capsella rubella HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
Cc00_g00190 Coffea canephora HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
Thhalv10026126m.g Eutrema salsugineum HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
Sc06g0001250 Simmondsia chinensis HOM05D003380 ORTHO05D004232 3.6e-26 121.3 67 86.6
Atru.chr7.2688 Acer truncatum HOM05D003380 ORTHO05D018146 4.7e-26 120.9 69 87.0
CANSAT64G1923 Cannabis sativa HOM05D003380 ORTHO05D018146 4.7e-26 120.9 69 84.1
Nn1g03129 Nelumbo nucifera HOM05D003380 ORTHO05D004232 4.7e-26 120.9 68 83.8
Potri.018G145900 Populus trichocarpa HOM05D003380 ORTHO05D004232 8.0e-26 120.2 67 85.1
Sabra18G0120300 Salix brachista HOM05D003380 ORTHO05D004232 8.0e-26 120.2 67 85.1
Sabra18G0127800 Salix brachista HOM05D003380 ORTHO05D004232 8.0e-26 120.2 67 85.1
Sp7g29150 Schrenkiella parvula HOM05D003380 ORTHO05D004232 8.0e-26 120.2 67 85.1
Eucgr.C02133 Eucalyptus grandis HOM05D003380 ORTHO05D004232 1.0e-25 119.8 68 85.3
Sabra06G0058900 Salix brachista HOM05D003380 ORTHO05D004232 1.0e-25 119.8 67 85.1
COL.COLO4_18628 Corchorus olitorius HOM05D003380 ORTHO05D004232 1.4e-25 119.4 68 86.8
Lj4A319G22 Lonicera japonica HOM05D003380 ORTHO05D004232 1.4e-25 119.4 67 85.1
MBI13_g34299_MAGBIO Magnolia biondii HOM05D003380 ORTHO05D004232 1.8e-25 119.0 70 81.4
Nn3g19887 Nelumbo nucifera HOM05D003380 ORTHO05D004232 1.8e-25 119.0 68 83.8
RhsimUnG0051400 Rhododendron simsii HOM05D003380 ORTHO05D004232 1.8e-25 119.0 67 85.1
CSS0000176 Camellia sinensis var. sinensis HOM05D003380 ORTHO05D004232 2.3e-25 118.6 67 86.6
TAR383G1016 Trochodendron aralioides HOM05D003380 ORTHO05D004232 2.3e-25 118.6 68 83.8
unitig_578.g16397 Utricularia gibba HOM05D003380 ORTHO05D004232 3.0e-25 118.2 67 83.6
arahy.Tifrunner.gnm1.ann1.21Q806 Arachis hypogaea HOM05D003380 ORTHO05D004232 4.0e-25 117.9 70 85.7
arahy.Tifrunner.gnm1.ann1.AGKE2S Arachis hypogaea HOM05D003380 ORTHO05D004232 4.0e-25 117.9 70 85.7
Lj1g0002632 Lotus japonicus HOM05D003380 ORTHO05D004232 4.0e-25 117.9 70 85.7
Lalb_Chr23g0269261 Lupinus albus HOM05D003380 ORTHO05D004232 4.0e-25 117.9 70 85.7
Lalb_Chr08g0243471 Lupinus albus HOM05D003380 ORTHO05D004232 5.2e-25 117.5 70 84.3
Rhsim01G0218400 Rhododendron simsii HOM05D003380 ORTHO05D004232 5.2e-25 117.5 67 82.1
Migut.L01915 Erythranthe guttata HOM05D003380 ORTHO05D004232 6.7e-25 117.1 67 82.1
Lsat_1_v5_gn_5_56460 Lactuca sativa HOM05D003380 ORTHO05D004232 6.7e-25 117.1 68 80.9
SalBow6G4635 Salvia bowleyana HOM05D003380 ORTHO05D004232 6.7e-25 117.1 67 83.6
Rhsim03G0268700 Rhododendron simsii HOM05D003380 ORTHO05D004232 1.2e-24 116.3 67 82.1
Hund19388 Selenicereus undatus HOM05D003380 ORTHO05D004232 1.2e-24 116.3 69 84.1
BolC7t46306H Brassica oleracea HOM05D003380 ORTHO05D004232 3.3e-24 114.8 79 75.9
Nitab4.5_0007423g0010 Nicotiana tabacum HOM05D003380 ORTHO05D004232 3.3e-24 114.8 67 82.1
MD13G1234400 Malus domestica HOM05D003380 ORTHO05D004232 4.4e-24 114.4 66 83.3
Prupe.1G065200 Prunus persica HOM05D003380 ORTHO05D004232 4.4e-24 114.4 67 80.6
CARHR239170 Cardamine hirsuta HOM05D003380 ORTHO05D004232 5.7e-24 114.0 67 83.6
PSO170G5091 Papaver somniferum HOM05D003380 ORTHO05D004232 5.7e-24 114.0 67 82.1
PSO210G2204 Papaver somniferum HOM05D003380 ORTHO05D004232 5.7e-24 114.0 67 82.1
Hund03262 Selenicereus undatus HOM05D003380 ORTHO05D004232 5.7e-24 114.0 70 80.0
VMungo1309G0072 Vigna mungo HOM05D003380 ORTHO05D004232 5.7e-24 114.0 70 82.9
HanXRQChr03g0067311 Helianthus annuus HOM05D003380 ORTHO05D004232 7.5e-24 113.6 68 82.4
Nitab4.5_0000899g0140 Nicotiana tabacum HOM05D003380 ORTHO05D004232 7.5e-24 113.6 67 80.6
Nitab4.5_0001535g0020 Nicotiana tabacum HOM05D003380 ORTHO05D004232 7.5e-24 113.6 67 80.6
Glyma.04G077400 Glycine max HOM05D003380 ORTHO05D004232 9.7e-24 113.2 70 81.4
Nitab4.5_0000404g0220 Nicotiana tabacum HOM05D003380 ORTHO05D004232 9.7e-24 113.2 67 82.1
Os06g0139900 Oryza sativa ssp. japonica HOM05D003380 ORTHO05D004232 9.7e-24 113.2 67 76.1
Ca_15639_v3 Cicer arietinum L. HOM05D003380 ORTHO05D004232 1.3e-23 112.8 70 81.4
TPR.G12492 Trifolium pratense HOM05D003380 ORTHO05D004232 1.3e-23 112.8 70 81.4
vmacro15777 Vaccinium macrocarpon HOM05D003380 ORTHO05D004232 1.3e-23 112.8 63 85.7
MSTRG.10467 Avicennia marina HOM05D003380 ORTHO05D004232 1.7e-23 112.5 67 77.6
Migut.J00835 Erythranthe guttata HOM05D003380 ORTHO05D004232 1.7e-23 112.5 67 77.6
HPP92_004718 Vanilla planifolia HOM05D003380 ORTHO05D004232 1.7e-23 112.5 70 75.7
Actinidia38523 Actinidia chinensis HOM05D003380 ORTHO05D004232 2.2e-23 112.1 68 82.4
Medtr3g109210 Medicago truncatula HOM05D003380 ORTHO05D004232 2.2e-23 112.1 70 81.4
Peaxi162Scf00320g00122 Petunia axillaris HOM05D003380 ORTHO05D004232 3.7e-23 111.3 68 77.9
Os02g0770000 Oryza sativa ssp. japonica HOM05D003380 ORTHO05D004232 4.8e-23 110.9 67 76.1
Zm00001eb270240 Zea mays HOM05D003380 ORTHO05D004232 4.8e-23 110.9 67 74.6
Zm00001eb377530 Zea mays HOM05D003380 ORTHO05D004232 4.8e-23 110.9 67 74.6
CAN.G228.7 Capsicum annuum HOM05D003380 ORTHO05D004232 6.3e-23 110.5 67 77.6
MD16G1239000 Malus domestica HOM05D003380 ORTHO05D004232 6.3e-23 110.5 66 80.3
Lj6C279G2 Lonicera japonica HOM05D003380 ORTHO05D004232 8.3e-23 110.2 67 79.1
Phvul.009G103400 Phaseolus vulgaris HOM05D003380 ORTHO05D004232 8.3e-23 110.2 70 80.0
Sopen07g005910 Solanum pennellii HOM05D003380 ORTHO05D004232 8.3e-23 110.2 67 77.6
PGSC0003DMG400009772 Solanum tuberosum HOM05D003380 ORTHO05D004232 8.3e-23 110.2 67 77.6
PGSC0003DMG400013685 Solanum tuberosum HOM05D003380 ORTHO05D004232 8.3e-23 110.2 67 80.6
Solyc07g016200.3 Solanum lycopersicum HOM05D003380 ORTHO05D004232 1.1e-22 109.8 67 76.1
Aa31LG2G19070 Aethionema arabicum HOM05D003380 ORTHO05D004232 1.4e-22 109.4 67 82.1
Ah.09g234230 Amaranthus hybridus HOM05D003380 ORTHO05D004232 1.8e-22 109.0 68 77.9
FvH4_2g36480 Fragaria vesca HOM05D003380 ORTHO05D004232 1.8e-22 109.0 68 80.9
Glyma.06G078500 Glycine max HOM05D003380 ORTHO05D004232 2.4e-22 108.6 70 78.6
RcHm_v2.0_Chr6g0305401 Rosa chinensis HOM05D003380 ORTHO05D004232 2.4e-22 108.6 70 78.6
AUR62020647 Chenopodium quinoa HOM05D003380 ORTHO05D004232 3.1e-22 108.2 68 79.4
AUR62038728 Chenopodium quinoa HOM05D003380 ORTHO05D004232 3.1e-22 108.2 68 79.4
FAN15G0754 Fragaria x ananassa HOM05D003380 ORTHO05D004232 3.1e-22 108.2 68 80.9
FAN20G0682 Fragaria x ananassa HOM05D003380 ORTHO05D004232 3.1e-22 108.2 68 80.9
Psat5g024560 Pisum sativum HOM05D003380 ORTHO05D004232 4.1e-22 107.8 70 77.1
FAN03G3318 Fragaria x ananassa HOM05D003380 ORTHO05D004232 2.0e-21 105.5 65 78.5
SGA_v2.0_scaffold21G09610 Striga asiatica HOM05D003380 ORTHO05D004232 5.9e-21 104.0 64 78.1
FvH4_7g10810 Fragaria vesca HOM05D003380 ORTHO05D004232 7.7e-21 103.6 59 84.7
CAN.G106.10 Capsicum annuum HOM05D003380 ORTHO05D004232 1.3e-20 102.8 67 76.1
FAN06G1260 Fragaria x ananassa HOM05D003380 ORTHO05D004232 2.2e-20 102.1 59 83.1
FAN06G5002 Fragaria x ananassa HOM05D003380 ORTHO05D004232 2.2e-20 102.1 59 83.1
SEGI_32352 Sequoiadendron giganteum HOM05D003380 ORTHO05D018146 2.2e-20 102.1 70 75.7
SGA_v2.0_scaffold450G51802 Striga asiatica HOM05D003380 ORTHO05D004232 2.2e-20 102.1 64 76.6
ATR0626G170 Amborella trichopoda HOM05D003380 ORTHO05D004232 5.0e-20 100.9 68 75.0
Aqoxy7G02672 Aquilegia oxysepala HOM05D003380 ORTHO05D004232 3.2e-19 98.2 59 81.4
EL10Ac2g03687 Beta vulgaris HOM05D003380 ORTHO05D004232 9.4e-19 96.7 68 73.5
ATR0796G318 Amborella trichopoda HOM05D003380 ORTHO05D018146 2.0e-16 89.0 67 67.2
A05p03280 Brassica napus HOM05D003380 ORTHO05D018146 2.0e-16 89.0 69 66.7
BraA05t19317Z Brassica rapa HOM05D003380 ORTHO05D018146 2.0e-16 89.0 69 66.7
Lj6A275T62 Lonicera japonica HOM05D003380 ORTHO05D004232 2.0e-16 89.0 53 83.0
Pp3c18_17380 Physcomitrium patens HOM05D003380 ORTHO05D004232 2.8e-15 85.1 52 76.9
AagrBONN_evm.TU.Sc2ySwM_228.613 Anthoceros agrestis HOM05D003380 ORTHO05D004232 3.7e-15 84.7 58 65.5
Mapoly0016s0041 Marchantia polymorpha HOM05D003380 ORTHO05D004232 5.4e-14 80.9 49 77.6
SMO117G0031 Selaginella moellendorffii HOM05D003380 ORTHO05D004232 5.0e-12 74.3 49 71.4
CBR_g55787 Chara braunii HOM05D003380 ORTHO05D004232 6.1e-10 67.4 62 53.2
Atru.chr1.909 Acer truncatum HOM05D003380 ORTHO05D004232 3.4e-08 61.6 58 58.6
Medtr3g108450 Medicago truncatula HOM05D003380 ORTHO05D004232 1.1e-06 56.6 72 52.8
Sopen05g027780 Solanum pennellii HOM05D003380 ORTHO05D004232 1.1e-06 56.6 36 77.8


User provided reference genes

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