Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000540.2 Cucumis melo HOM05D003863 ORTHO05D004372 2.9e-58 228.4 122 100.0
CsaV3_3G039120 Cucumis sativus L. HOM05D003863 ORTHO05D004372 3.3e-57 224.9 122 97.5
Sed0012159 Sechium edule HOM05D003863 ORTHO05D004372 4.1e-52 208.0 122 91.0
Sed0023590 Sechium edule HOM05D003863 ORTHO05D004372 2.7e-51 205.3 122 88.5
Cfa016873 Carpinus fangiana HOM05D003863 ORTHO05D004372 6.2e-48 194.1 124 83.1
GSVIVG01033339001 Vitis vinifera HOM05D003863 ORTHO05D004372 4.4e-46 188.0 123 82.1
TPR.G3845 Trifolium pratense HOM05D003863 ORTHO05D004372 1.7e-45 186.0 120 80.0
arahy.Tifrunner.gnm1.ann1.8Q4A0R Arachis hypogaea HOM05D003863 ORTHO05D004372 2.9e-45 185.3 122 77.0
Ciclev10005578m.g Citrus clementina HOM05D003863 ORTHO05D004372 4.9e-45 184.5 123 78.0
Lalb_Chr20g0110941 Lupinus albus HOM05D003863 ORTHO05D004372 4.9e-45 184.5 124 79.0
arahy.Tifrunner.gnm1.ann1.C9C50Y Arachis hypogaea HOM05D003863 ORTHO05D004372 6.4e-45 184.1 122 76.2
Phvul.007G256000 Phaseolus vulgaris HOM05D003863 ORTHO05D004372 6.4e-45 184.1 123 79.7
Cpa.g.sc92.2 Carica papaya HOM05D003863 ORTHO05D004372 8.3e-45 183.7 122 80.3
ClCG10G017290 Citrullus lanatus HOM05D003863 ORTHO05D004372 8.3e-45 183.7 199 57.8
Haze_19919 Corylus avellana HOM05D003863 ORTHO05D004372 8.3e-45 183.7 124 80.6
FvH4_5g27800 Fragaria vesca HOM05D003863 ORTHO05D004372 8.3e-45 183.7 123 77.2
RcHm_v2.0_Chr3g0480921 Rosa chinensis HOM05D003863 ORTHO05D004372 8.3e-45 183.7 123 77.2
Medtr7g092380 Medicago truncatula HOM05D003863 ORTHO05D004372 1.4e-44 183.0 120 78.3
Thecc.05G164500 Theobroma cacao HOM05D003863 ORTHO05D004372 2.4e-44 182.2 122 76.2
Gorai.002G153200 Gossypium raimondii HOM05D003863 ORTHO05D004372 3.2e-44 181.8 121 76.0
FAN04G3058 Fragaria x ananassa HOM05D003863 ORTHO05D004372 4.1e-44 181.4 123 76.4
Gohir.D01G122300 Gossypium hirsutum HOM05D003863 ORTHO05D004372 7.1e-44 180.6 121 75.2
Medtr1g052110 Medicago truncatula HOM05D003863 ORTHO05D004372 9.2e-44 180.3 122 74.6
Actinidia09364 Actinidia chinensis HOM05D003863 ORTHO05D004372 2.1e-43 179.1 123 79.7
Manes.09G030000 Manihot esculenta HOM05D003863 ORTHO05D004372 2.1e-43 179.1 122 77.0
FAN08G1264 Fragaria x ananassa HOM05D003863 ORTHO05D004372 2.7e-43 178.7 123 75.6
Psat6g089000 Pisum sativum HOM05D003863 ORTHO05D004372 2.7e-43 178.7 122 74.6
arahy.Tifrunner.gnm1.ann1.C9GWT5 Arachis hypogaea HOM05D003863 ORTHO05D004372 3.5e-43 178.3 120 73.3
arahy.Tifrunner.gnm1.ann1.S1RWR6 Arachis hypogaea HOM05D003863 ORTHO05D004372 3.5e-43 178.3 120 73.3
Glyma.02G179900 Glycine max HOM05D003863 ORTHO05D004372 3.5e-43 178.3 123 75.6
Gorai.002G229300 Gossypium raimondii HOM05D003863 ORTHO05D004372 3.5e-43 178.3 122 76.2
Sc13g0002010 Simmondsia chinensis HOM05D003863 ORTHO05D004372 4.6e-43 177.9 122 73.8
QL07p021922 Quercus lobata HOM05D003863 ORTHO05D004372 6.0e-43 177.6 122 77.9
TPR.G22785 Trifolium pratense HOM05D003863 ORTHO05D004372 6.0e-43 177.6 122 75.4
MD14G1065200 Malus domestica HOM05D003863 ORTHO05D004372 7.8e-43 177.2 123 77.2
Psat3g071000 Pisum sativum HOM05D003863 ORTHO05D004372 7.8e-43 177.2 125 76.8
Ca_25740_v3 Cicer arietinum L. HOM05D003863 ORTHO05D004372 1.3e-42 176.4 117 75.2
Rhsim04G0099400 Rhododendron simsii HOM05D003863 ORTHO05D004372 1.3e-42 176.4 123 78.0
Phvul.001G137200 Phaseolus vulgaris HOM05D003863 ORTHO05D004372 1.7e-42 176.0 110 78.2
COL.COLO4_30158 Corchorus olitorius HOM05D003863 ORTHO05D004372 2.3e-42 175.6 122 75.4
Gohir.A01G195500 Gossypium hirsutum HOM05D003863 ORTHO05D004372 2.3e-42 175.6 122 75.4
Prupe.7G068800 Prunus persica HOM05D003863 ORTHO05D004372 2.3e-42 175.6 123 78.0
VMungo1383G0990 Vigna mungo HOM05D003863 ORTHO05D004372 3.0e-42 175.3 120 76.7
Glyma.19G143100 Glycine max HOM05D003863 ORTHO05D004372 3.9e-42 174.9 120 74.2
TWI77G0762 Tripterygium wilfordii HOM05D003863 ORTHO05D004372 3.9e-42 174.9 123 78.0
Lalb_Chr25g0287491 Lupinus albus HOM05D003863 ORTHO05D004372 5.1e-42 174.5 121 75.2
vmacro09095 Vaccinium macrocarpon HOM05D003863 ORTHO05D004372 6.6e-42 174.1 123 77.2
Gohir.A01G135100 Gossypium hirsutum HOM05D003863 ORTHO05D004372 8.6e-42 173.7 121 73.6
Lj1g0028028 Lotus japonicus HOM05D003863 ORTHO05D004372 8.6e-42 173.7 120 73.3
Sp3g10410 Schrenkiella parvula HOM05D003863 ORTHO05D004372 1.9e-41 172.6 122 73.8
Glyma.10G094400 Glycine max HOM05D003863 ORTHO05D004372 2.5e-41 172.2 123 73.2
TWI74G1121 Tripterygium wilfordii HOM05D003863 ORTHO05D004372 2.5e-41 172.2 123 76.4
Duzib128G1292 Durio zibethinus HOM05D003863 ORTHO05D004372 4.3e-41 171.4 123 74.8
Thhalv10014343m.g Eutrema salsugineum HOM05D003863 ORTHO05D004372 4.3e-41 171.4 121 73.6
HanXRQChr05g0132211 Helianthus annuus HOM05D003863 ORTHO05D004372 5.6e-41 171.0 120 75.8
VMungo0720G1655 Vigna mungo HOM05D003863 ORTHO05D004372 5.6e-41 171.0 123 73.2
Lsat_1_v5_gn_8_80000 Lactuca sativa HOM05D003863 ORTHO05D004372 9.5e-41 170.2 121 75.2
THA.LOC104819593 Tarenaya hassleriana HOM05D003863 ORTHO05D004372 9.5e-41 170.2 125 76.0
Duzib093G1809 Durio zibethinus HOM05D003863 ORTHO05D004372 1.2e-40 169.9 122 73.8
MD12G1065200 Malus domestica HOM05D003863 ORTHO05D004372 1.2e-40 169.9 121 76.0
Carub.0130s0002 Capsella rubella HOM05D003863 ORTHO05D004372 1.6e-40 169.5 122 73.0
CiPaw.10G030300 Carya illinoinensis HOM05D003863 ORTHO05D004372 2.1e-40 169.1 124 74.2
AUR62024384 Chenopodium quinoa HOM05D003863 ORTHO05D004372 2.1e-40 169.1 122 71.3
Hma1.2p1_0621F.1_g190590 Hydrangea macrophylla HOM05D003863 ORTHO05D004372 2.1e-40 169.1 123 74.0
Lj5g0011357 Lotus japonicus HOM05D003863 ORTHO05D004372 2.1e-40 169.1 119 73.9
vmacro07872 Vaccinium macrocarpon HOM05D003863 ORTHO05D004372 3.6e-40 168.3 123 74.0
CSS0033131 Camellia sinensis var. sinensis HOM05D003863 ORTHO05D004372 4.7e-40 167.9 121 73.6
BcaB04g21091 Brassica carinata HOM05D003863 ORTHO05D004372 6.2e-40 167.5 121 72.7
ECA247G0427 Erigeron canadensis HOM05D003863 ORTHO05D004372 6.2e-40 167.5 123 74.0
AL3G23850 Arabidopsis lyrata HOM05D003863 ORTHO05D004372 1.1e-39 166.8 122 70.5
Eucgr.A02407 Eucalyptus grandis HOM05D003863 ORTHO05D004372 1.1e-39 166.8 123 72.4
Hund19171 Selenicereus undatus HOM05D003863 ORTHO05D004372 1.8e-39 166.0 122 69.7
MBI04_g13619_MAGBIO Magnolia biondii HOM05D003863 ORTHO05D004372 2.3e-39 165.6 123 69.1
Nitab4.5_0011629g0010 Nicotiana tabacum HOM05D003863 ORTHO05D004372 2.3e-39 165.6 120 71.7
Oeu033773.1 Olea europaea HOM05D003863 ORTHO05D004372 2.3e-39 165.6 120 74.2
Nitab4.5_0000608g0040 Nicotiana tabacum HOM05D003863 ORTHO05D004372 3.1e-39 165.2 118 72.9
ECA236G3425 Erigeron canadensis HOM05D003863 ORTHO05D004372 4.0e-39 164.9 121 72.7
Carub.0006s0583 Capsella rubella HOM05D003863 ORTHO05D004372 8.9e-39 163.7 123 71.5
CAN.G1161.3 Capsicum annuum HOM05D003863 ORTHO05D004372 8.9e-39 163.7 118 72.0
CARHR086750 Cardamine hirsuta HOM05D003863 ORTHO05D004372 1.2e-38 163.3 122 70.5
THA.LOC104807339 Tarenaya hassleriana HOM05D003863 ORTHO05D004372 1.2e-38 163.3 123 70.7
Lj7A597G67 Lonicera japonica HOM05D003863 ORTHO05D004372 1.5e-38 162.9 123 69.9
Migut.J01791 Erythranthe guttata HOM05D003863 ORTHO05D004372 2.0e-38 162.5 118 71.2
AT3G12170 Arabidopsis thaliana HOM05D003863 ORTHO05D004372 2.6e-38 162.2 122 68.9
COL.COLO4_28711 Corchorus olitorius HOM05D003863 ORTHO05D004372 4.4e-38 161.4 142 63.4
Hma1.2p1_1995F.1_g310320 Hydrangea macrophylla HOM05D003863 ORTHO05D004372 5.8e-38 161.0 123 71.5
Nitab4.5_0000991g0120 Nicotiana tabacum HOM05D003863 ORTHO05D004372 5.8e-38 161.0 118 71.2
Carub.0003s1154 Capsella rubella HOM05D003863 ORTHO05D004372 7.6e-38 160.6 122 68.0
Thhalv10021344m.g Eutrema salsugineum HOM05D003863 ORTHO05D004372 7.6e-38 160.6 122 68.9
AL6G17060 Arabidopsis lyrata HOM05D003863 ORTHO05D004372 1.3e-37 159.8 124 69.4
AT5G06910 Arabidopsis thaliana HOM05D003863 ORTHO05D004372 1.7e-37 159.5 126 69.8
CARHR206240 Cardamine hirsuta HOM05D003863 ORTHO05D004372 1.7e-37 159.5 122 69.7
PGR004G2357 Punica granatum HOM05D003863 ORTHO05D004372 1.7e-37 159.5 124 66.1
Aa31LG5G24190 Aethionema arabicum HOM05D003863 ORTHO05D004372 2.2e-37 159.1 122 68.0
BolC1t05258H Brassica oleracea HOM05D003863 ORTHO05D004372 2.2e-37 159.1 123 69.1
Potri.006G056400 Populus trichocarpa HOM05D003863 ORTHO05D004372 2.2e-37 159.1 124 70.2
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 2.9e-37 158.7 113 69.9
Lsat_1_v5_gn_9_27640 Lactuca sativa HOM05D003863 ORTHO05D004372 2.9e-37 158.7 122 71.3
Potri.016G051800 Populus trichocarpa HOM05D003863 ORTHO05D004372 2.9e-37 158.7 124 68.5
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 3.7e-37 158.3 113 69.0
C01p53120 Brassica napus HOM05D003863 ORTHO05D004372 3.7e-37 158.3 121 66.9
BcaC09g48222 Brassica carinata HOM05D003863 ORTHO05D004372 6.4e-37 157.5 121 66.9
Nn7g36178 Nelumbo nucifera HOM05D003863 ORTHO05D004372 6.4e-37 157.5 123 65.9
DCAR_017002 Daucus carota HOM05D003863 ORTHO05D004372 8.3e-37 157.1 121 66.9
Atru.chr1.998 Acer truncatum HOM05D003863 ORTHO05D004372 1.1e-36 156.8 123 67.5
Aqoxy1G03653 Aquilegia oxysepala HOM05D003863 ORTHO05D004372 1.1e-36 156.8 124 65.3
Nitab4.5_0000452g0120 Nicotiana tabacum HOM05D003863 ORTHO05D004372 1.4e-36 156.4 120 68.3
BcaC05g29275 Brassica carinata HOM05D003863 ORTHO05D004372 1.9e-36 156.0 113 69.0
BolC5t34225H Brassica oleracea HOM05D003863 ORTHO05D004372 1.9e-36 156.0 113 69.0
Sabra06G0039800 Salix brachista HOM05D000738 ORTHO05D004372 1.9e-36 156.0 123 69.1
PGSC0003DMG400008182 Solanum tuberosum HOM05D003863 ORTHO05D004372 1.9e-36 156.0 118 69.5
TAR369G0992 Trochodendron aralioides HOM05D003863 ORTHO05D004372 2.4e-36 155.6 122 68.9
TAR623G1565 Trochodendron aralioides HOM05D003863 ORTHO05D004372 2.4e-36 155.6 124 68.5
Actinidia38567 Actinidia chinensis HOM05D004736 ORTHO05D006424 4.1e-36 154.8 111 74.8
CDE05G1286 Ceratophyllum demersum HOM05D003863 ORTHO05D004372 4.1e-36 154.8 124 67.7
Nn5g29748 Nelumbo nucifera HOM05D003863 ORTHO05D004372 4.1e-36 154.8 123 65.9
Solyc10g079090.3 Solanum lycopersicum HOM05D003863 ORTHO05D004372 5.4e-36 154.5 118 66.9
Atru.chr1.970 Acer truncatum HOM05D003863 ORTHO05D004372 7.1e-36 154.1 123 66.7
SGA_v2.0_scaffold105G30458 Striga asiatica HOM05D003863 ORTHO05D004372 7.1e-36 154.1 118 68.6
unitig_736.g22293 Utricularia gibba HOM05D003863 ORTHO05D004372 9.2e-36 153.7 118 65.3
Sopen10g029730 Solanum pennellii HOM05D003863 ORTHO05D004372 1.2e-35 153.3 118 66.1
Dinv36281 Davidia involucrata HOM05D003863 ORTHO05D004372 1.6e-35 152.9 119 68.1
Sabra16G0055500 Salix brachista HOM05D000738 ORTHO05D004372 1.6e-35 152.9 113 66.4
AUR62025971 Chenopodium quinoa HOM05D003863 ORTHO05D004372 2.1e-35 152.5 99 73.7
HanXRQChr14g0439201 Helianthus annuus HOM05D003863 ORTHO05D004372 2.7e-35 152.1 111 73.0
SGA_v2.0_scaffold69G23092 Striga asiatica HOM05D003863 ORTHO05D004372 2.7e-35 152.1 118 66.9
TAR623G1571 Trochodendron aralioides HOM05D003863 ORTHO05D004372 2.7e-35 152.1 122 68.0
Peaxi162Scf00003g04127 Petunia axillaris HOM05D003863 ORTHO05D004372 1.7e-34 149.4 118 66.9
Os02g0195800 Oryza sativa ssp. japonica HOM05D003863 ORTHO05D004372 3.3e-33 145.2 121 63.6
CSS0001798 Camellia sinensis var. sinensis HOM05D003863 ORTHO05D004372 1.2e-32 143.3 124 66.9
Rhsim03G0011600 Rhododendron simsii HOM05D003863 ORTHO05D004372 1.6e-32 142.9 123 65.0
Cc06_g16500 Coffea canephora HOM05D003863 ORTHO05D004372 2.8e-32 142.1 120 64.2
Eucgr.D01662 Eucalyptus grandis HOM05D003863 ORTHO05D004372 6.2e-32 141.0 106 71.7
Dinv24118 Davidia involucrata HOM05D000738 ORTHO05D000675 8.1e-32 140.6 121 66.1
Eucgr.D00166 Eucalyptus grandis HOM05D003863 ORTHO05D004372 4.0e-31 138.3 107 70.1
unitig_899.g15083 Utricularia gibba HOM05D003863 ORTHO05D004372 1.2e-30 136.7 99 68.7
DCAR_013574 Daucus carota HOM05D000738 ORTHO05D000675 1.5e-30 136.3 122 59.8
Eucgr.H04357 Eucalyptus grandis HOM05D003863 ORTHO05D004372 1.5e-30 136.3 106 69.8
HPP92_027547 Vanilla planifolia HOM05D003863 ORTHO05D004372 9.9e-30 133.7 120 55.8
Zm00001eb236340 Zea mays HOM05D003863 ORTHO05D004372 8.4e-29 130.6 119 58.0
HPP92_003009 Vanilla planifolia HOM05D003863 ORTHO05D004372 2.1e-27 125.9 132 50.8
Actinidia17250 Actinidia chinensis HOM05D003863 ORTHO05D004372 4.6e-27 124.8 83 77.1
MSTRG.10828 Avicennia marina HOM05D003863 ORTHO05D004372 2.3e-26 122.5 117 59.8
Nn2g15421 Nelumbo nucifera HOM05D003863 ORTHO05D004372 8.7e-26 120.6 123 56.9
SEGI_03407 Sequoiadendron giganteum HOM05D003863 ORTHO05D004372 5.6e-25 117.9 124 54.0
Zm00001eb205970 Zea mays HOM05D003863 ORTHO05D004372 2.0e-22 109.4 84 66.7
Zm00001eb139200 Zea mays HOM05D003863 ORTHO05D004372 4.4e-22 108.2 85 64.7
EL10Ac3g06991 Beta vulgaris HOM05D003863 ORTHO05D004372 5.8e-22 107.8 124 54.8
Lj4C258T4 Lonicera japonica HOM05D003863 ORTHO05D004372 1.7e-21 106.3 122 54.1
Gohir.D01G185900 Gossypium hirsutum HOM05D003863 ORTHO05D004372 2.9e-21 105.5 68 73.5
HanXRQChr15g0491301 Helianthus annuus HOM05D003863 ORTHO05D004372 3.8e-21 105.1 124 51.6
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 3.8e-21 105.1 82 64.6
Aa31sc947G20 Aethionema arabicum HOM05D003863 ORTHO05D004372 2.4e-20 102.4 80 65.0
PSO339G0957 Papaver somniferum HOM05D003863 ORTHO05D004372 2.4e-20 102.4 126 46.8
ATR0912G002 Amborella trichopoda HOM05D003863 ORTHO05D004372 3.9e-18 95.1 101 57.4
PSO384G3404 Papaver somniferum HOM05D003863 ORTHO05D004372 5.1e-18 94.7 126 46.0
MSTRG.26104 Avicennia marina HOM05D003863 ORTHO05D004372 1.5e-17 93.2 55 74.5
Eucgr.G00005 Eucalyptus grandis HOM05D003863 ORTHO05D004372 4.3e-17 91.7 122 46.7
Aa31sc352G20 Aethionema arabicum HOM05D003863 ORTHO05D004372 5.6e-17 91.3 99 52.5
Hma1.2p1_0247F.1_g101930 Hydrangea macrophylla HOM05D003863 ORTHO05D004372 9.6e-17 90.5 50 84.0
SMO140G0044 Selaginella moellendorffii HOM05D003863 ORTHO05D004372 3.6e-16 88.6 124 41.9
AagrBONN_evm.TU.Sc2ySwM_117.632 Anthoceros agrestis HOM05D003863 ORTHO05D004372 4.5e-14 81.6 114 43.9
Nn4g24599 Nelumbo nucifera HOM05D003863 ORTHO05D004372 5.8e-14 81.3 52 65.4
Pp3c11_26050 Physcomitrium patens HOM05D003863 ORTHO05D004372 1.3e-13 80.1 122 39.3
Dinv18093 Davidia involucrata HOM05D003863 ORTHO05D004372 1.4e-12 76.6 112 48.2
Mapoly0005s0205 Marchantia polymorpha HOM05D003863 ORTHO05D004372 4.2e-12 75.1 149 37.6
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 1.0e-10 70.5 113 45.1
CBR_g50357 Chara braunii HOM05D003863 ORTHO05D004372 1.3e-10 70.1 147 34.7
CBR_g31684 Chara braunii HOM05D003863 ORTHO05D004372 7.4e-09 64.3 152 32.9
Cre09.g389550 Chlamydomonas reinhardtii HOM05D003863 ORTHO05D004372 8.1e-08 60.8 132 29.5
Aa31sc1365G20 Aethionema arabicum HOM05D003863 ORTHO05D004372 4.5e-06 55.1 60 55.0


User provided reference genes

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