Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 9.3e-46 186.4 88 100.0
MELO3C000460.2 Cucumis melo HOM05D002560 ORTHO05D003782 9.3e-46 186.4 88 100.0
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 9.3e-46 186.4 88 100.0
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 6.0e-45 183.7 88 97.7
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 7.3e-43 176.8 88 90.9
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 6.2e-42 173.7 88 90.9
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 2.0e-40 168.7 88 86.4
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 2.0e-40 168.7 88 86.4
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 3.4e-40 167.9 88 85.2
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 3.4e-40 167.9 88 86.4
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 4.5e-40 167.5 88 85.2
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 7.6e-40 166.8 88 84.1
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 7.6e-40 166.8 88 84.1
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 9.9e-40 166.4 88 85.2
CAN.G133.1 Capsicum annuum HOM05D002560 ORTHO05D003782 9.9e-40 166.4 88 85.2
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 1.3e-39 166.0 88 84.1
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 1.3e-39 166.0 88 84.1
Atru.chr8.2364 Acer truncatum HOM05D002560 ORTHO05D003782 1.7e-39 165.6 88 84.1
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 2.2e-39 165.2 88 81.8
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 2.2e-39 165.2 88 85.2
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 2.9e-39 164.9 88 86.4
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.9e-39 164.9 88 86.4
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 3.8e-39 164.5 88 83.0
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 3.8e-39 164.5 88 86.4
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 6.4e-39 163.7 88 84.1
Haze_21119 Corylus avellana HOM05D002560 ORTHO05D003782 8.4e-39 163.3 88 80.7
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 8.4e-39 163.3 88 84.1
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 8.4e-39 163.3 88 83.0
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 1.1e-38 162.9 88 84.1
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 1.4e-38 162.5 88 83.0
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.4e-38 162.5 88 83.0
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.9e-38 162.2 88 84.1
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 1.9e-38 162.2 88 83.0
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 2.4e-38 161.8 88 83.0
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 2.4e-38 161.8 88 85.2
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 3.2e-38 161.4 88 81.8
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 4.2e-38 161.0 88 84.1
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 4.2e-38 161.0 88 84.1
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 5.4e-38 160.6 88 83.0
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 5.4e-38 160.6 88 85.2
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 5.4e-38 160.6 88 85.2
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 5.4e-38 160.6 88 85.2
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 5.4e-38 160.6 88 85.2
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 5.4e-38 160.6 88 85.2
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 5.4e-38 160.6 88 81.8
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 7.1e-38 160.2 88 81.8
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 7.1e-38 160.2 88 83.0
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 7.1e-38 160.2 88 83.0
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 7.1e-38 160.2 88 83.0
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 7.1e-38 160.2 88 84.1
Cpa.g.sc86.8 Carica papaya HOM05D002560 ORTHO05D003782 9.3e-38 159.8 88 86.4
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 9.3e-38 159.8 88 83.0
VMungo1383G3009 Vigna mungo HOM05D002560 ORTHO05D003782 9.3e-38 159.8 88 83.0
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 1.6e-37 159.1 88 80.7
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 1.6e-37 159.1 88 81.8
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 1.6e-37 159.1 89 83.1
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.1e-37 158.7 88 84.1
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 2.1e-37 158.7 88 81.8
COL.COLO4_08633 Corchorus olitorius HOM05D002560 ORTHO05D003782 2.7e-37 158.3 88 81.8
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 2.7e-37 158.3 88 83.0
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 2.7e-37 158.3 89 84.3
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 3.5e-37 157.9 88 80.7
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 7.9e-37 156.8 91 81.3
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 1.3e-36 156.0 89 82.0
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 1.3e-36 156.0 88 80.7
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.3e-36 156.0 88 79.5
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 1.3e-36 156.0 88 79.5
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 1.8e-36 155.6 88 77.3
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 2.3e-36 155.2 89 82.0
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 2.3e-36 155.2 88 79.5
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 2.3e-36 155.2 88 78.4
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 3.0e-36 154.8 88 77.3
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 3.0e-36 154.8 88 78.4
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 3.0e-36 154.8 88 77.3
vmacro20346 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 3.0e-36 154.8 88 79.5
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 3.9e-36 154.5 88 78.4
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 5.1e-36 154.1 88 75.0
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 5.1e-36 154.1 88 78.4
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 5.1e-36 154.1 88 80.7
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 5.1e-36 154.1 88 80.7
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 5.1e-36 154.1 88 79.5
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 6.7e-36 153.7 88 77.3
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 8.7e-36 153.3 88 80.7
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 1.1e-35 152.9 88 79.5
Lalb_Chr01g0023591 Lupinus albus HOM05D002560 ORTHO05D003782 1.5e-35 152.5 88 80.7
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 1.5e-35 152.5 88 78.4
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 1.5e-35 152.5 88 79.5
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 1.5e-35 152.5 88 77.3
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 2.5e-35 151.8 88 80.7
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 2.5e-35 151.8 88 80.7
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 3.3e-35 151.4 88 80.7
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 3.3e-35 151.4 88 76.1
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 4.3e-35 151.0 88 77.3
Solyc10g076270.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 4.3e-35 151.0 88 77.3
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 5.6e-35 150.6 88 76.1
Phvul.008G088100 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 5.6e-35 150.6 88 78.4
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 5.6e-35 150.6 88 75.0
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 7.4e-35 150.2 88 76.1
Sopen10g027940 Solanum pennellii HOM05D002560 ORTHO05D003782 9.6e-35 149.8 88 76.1
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 1.3e-34 149.4 88 77.3
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.3e-34 149.4 96 74.0
Lj2C63G17 Lonicera japonica HOM05D002560 ORTHO05D003782 1.3e-34 149.4 88 78.4
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 1.3e-34 149.4 88 78.4
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 1.6e-34 149.1 88 79.5
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 1.6e-34 149.1 88 76.1
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 2.1e-34 148.7 88 76.1
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 3.7e-34 147.9 88 75.0
AUR62006330 Chenopodium quinoa HOM05D002560 ORTHO05D003782 4.8e-34 147.5 88 75.0
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 6.2e-34 147.1 88 76.1
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 8.1e-34 146.7 89 78.7
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 8.1e-34 146.7 89 78.7
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 1.1e-33 146.4 89 77.5
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.1e-33 146.4 88 75.0
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 1.4e-33 146.0 86 76.7
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 2.4e-33 145.2 88 76.1
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 3.1e-33 144.8 88 71.6
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 5.3e-33 144.1 88 76.1
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 5.3e-33 144.1 88 76.1
arahy.Tifrunner.gnm1.ann1.D1231E Arachis hypogaea HOM05D002560 ORTHO05D003782 6.9e-33 143.7 89 77.5
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 6.9e-33 143.7 88 73.9
Eucgr.K01257 Eucalyptus grandis HOM05D002560 ORTHO05D003782 9.0e-33 143.3 88 71.6
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 1.2e-32 142.9 88 73.9
Os11g0109933 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 1.2e-32 142.9 88 72.7
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 2.6e-32 141.7 88 72.7
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 3.4e-32 141.4 88 73.9
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 3.4e-32 141.4 88 73.9
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 3.4e-32 141.4 88 73.9
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 3.4e-32 141.4 88 73.9
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 3.4e-32 141.4 88 73.9
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 5.8e-32 140.6 89 71.9
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 5.8e-32 140.6 89 71.9
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 7.6e-32 140.2 88 72.7
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 7.6e-32 140.2 88 72.7
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 7.6e-32 140.2 88 72.7
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 7.6e-32 140.2 88 72.7
AUR62029728 Chenopodium quinoa HOM05D002560 ORTHO05D003782 7.6e-32 140.2 88 70.5
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 9.9e-32 139.8 88 72.7
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 1.3e-31 139.4 88 70.5
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.7e-31 139.0 88 73.9
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 2.2e-31 138.7 88 71.6
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 2.9e-31 138.3 88 72.7
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 2.9e-31 138.3 88 70.5
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 8.4e-31 136.7 88 69.3
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 8.4e-31 136.7 88 72.7
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 1.1e-30 136.3 88 69.3
CAN.G243.33 Capsicum annuum HOM05D002560 ORTHO05D022192 2.1e-29 132.1 88 68.2
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 6.0e-29 130.6 88 70.5
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 6.0e-29 130.6 87 69.0
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 6.0e-29 130.6 87 69.0
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 1.0e-28 129.8 88 70.5
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 1.3e-28 129.4 88 69.3
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 3.0e-28 128.3 88 69.3
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 3.9e-28 127.9 88 65.9
AT5G01770 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 1.1e-27 126.3 88 65.9
Zm00001eb195140 Zea mays HOM05D002560 ORTHO05D003782 1.1e-27 126.3 88 67.0
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 3.3e-27 124.8 88 64.8
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 9.6e-27 123.2 88 64.8
CARHR212130 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.6e-26 122.5 88 65.9
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 4.8e-26 120.9 90 62.2
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 6.2e-26 120.6 88 63.6
CSS0033860 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 3.1e-25 118.2 88 65.9
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 3.1e-25 118.2 68 76.5
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.2e-23 112.1 89 55.1
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 5.5e-22 107.5 93 53.8
MBI06_g28673_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 7.1e-22 107.1 77 66.2
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 9.3e-22 106.7 94 55.3
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 7.9e-21 103.6 88 54.5
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 3.9e-20 101.3 88 55.7
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 5.7e-19 97.4 89 55.1
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 9.7e-19 96.7 88 50.0
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 1.7e-15 85.9 88 45.5
PRCOL_00002325 Prasinoderma coloniale HOM05D002560 ORTHO05D003782 6.5e-15 84.0 88 46.6
Cre08.g371957 Chlamydomonas reinhardtii HOM05D002560 ORTHO05D003782 8.8e-12 73.6 91 42.9
CBR_g54867 Chara braunii HOM05D002560 ORTHO05D003782 2.0e-11 72.4 88 38.6
MBI18_g48147_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 7.7e-08 60.5 71 43.7
Haze_26280 Corylus avellana HOM05D002560 ORTHO05D003782 2.2e-07 58.9 88 35.2
MBI12_g13710_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 8.5e-07 57.0 71 40.8


User provided reference genes

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