Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.2e-285 986.1 599 100.0
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 3.3e-235 818.5 540 87.2
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 3.1e-233 812.0 540 92.8
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 2.5e-203 712.6 543 86.2
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 3.4e-176 622.5 567 67.9
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 5.2e-124 449.1 557 52.4
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 2.3e-116 423.7 598 48.5
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 6.0e-112 409.1 551 52.3
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 1.7e-111 407.5 595 48.4
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 3.9e-111 406.4 574 47.6
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 6.6e-111 405.6 588 45.7
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 1.9e-110 404.1 598 48.0
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 1.6e-109 401.0 573 48.0
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 2.4e-108 397.1 584 44.9
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 3.1e-108 396.7 594 46.0
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.0e-107 394.0 558 47.8
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 2.6e-107 393.7 593 46.9
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 3.4e-107 393.3 591 47.2
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 9.9e-107 391.7 561 49.4
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 2.2e-106 390.6 583 46.5
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 2.9e-106 390.2 552 50.0
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 4.2e-105 386.3 589 47.0
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 5.4e-105 386.0 551 47.9
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 2.1e-104 384.0 574 50.3
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 6.0e-104 382.5 571 45.2
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 6.0e-104 382.5 569 51.0
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 1.7e-103 380.9 500 46.0
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 1.5e-102 377.9 526 45.2
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.1e-101 374.0 517 48.9
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 6.2e-101 372.5 557 46.3
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 8.1e-101 372.1 571 53.1
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 1.8e-100 370.9 424 55.0
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 9.0e-100 368.6 564 47.2
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 9.0e-100 368.6 581 43.9
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 2.9e-98 363.6 579 44.6
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 4.9e-98 362.8 429 53.4
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 8.4e-98 362.1 580 48.6
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 8.4e-98 362.1 600 43.7
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 5.4e-97 359.4 557 45.2
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 1.3e-95 354.8 568 44.2
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 8.7e-95 352.1 520 47.5
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 1.1e-94 351.7 551 45.7
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 1.5e-94 351.3 559 47.8
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 2.8e-93 347.1 547 48.6
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 2.8e-93 347.1 567 47.6
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 5.3e-92 342.8 565 44.6
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 1.2e-91 341.7 608 45.7
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 2.0e-91 340.9 618 43.7
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 2.6e-91 340.5 567 47.3
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 9.9e-91 338.6 561 45.1
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 6.4e-90 335.9 608 43.1
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 1.1e-89 335.1 595 43.2
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 7.9e-88 328.9 559 44.5
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 2.3e-87 327.4 565 41.9
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 3.9e-87 326.6 502 46.4
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 2.5e-86 323.9 565 43.0
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 3.3e-86 323.6 567 45.7
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 4.3e-86 323.2 599 41.2
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 5.6e-86 322.8 604 43.5
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 3.7e-85 320.1 522 43.1
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 1.4e-84 318.2 560 38.9
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.4e-84 317.4 506 47.6
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 4.0e-84 316.6 601 42.8
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 4.0e-84 316.6 594 45.3
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 5.3e-84 316.2 606 41.6
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 3.4e-83 313.5 486 48.1
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 4.5e-83 313.2 557 40.4
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.8e-83 312.8 565 47.3
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.3e-82 311.6 559 45.4
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 9.3e-81 305.4 579 40.9
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 7.9e-80 302.4 565 44.2
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 3.9e-79 300.1 578 45.8
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.3e-78 297.0 569 46.4
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 3.3e-78 297.0 564 44.7
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 3.3e-78 297.0 479 47.4
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 5.7e-78 296.2 501 45.1
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 1.6e-77 294.7 563 42.3
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 9.0e-76 288.9 502 51.6
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 1.5e-75 288.1 453 51.9
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 2.5e-73 280.8 552 42.0
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.2e-73 280.4 547 41.7
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 7.2e-73 279.3 563 43.7
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 1.6e-72 278.1 442 47.5
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 4.6e-72 276.6 490 45.1
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 2.3e-71 274.2 493 45.2
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 2.3e-71 274.2 445 47.9
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 4.1e-68 263.5 507 43.4
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 7.7e-67 259.2 560 45.5
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.0e-66 258.8 312 51.6
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.2e-66 257.7 540 41.7
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 3.8e-66 256.9 509 43.4
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 4.6e-64 250.0 578 43.8
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 3.0e-63 247.3 416 43.8
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 1.4e-60 238.4 553 36.7
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.4e-60 238.4 478 41.6
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 9.1e-60 235.7 414 42.5
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 1.0e-58 232.3 518 44.8
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 2.9e-58 230.7 558 34.6
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 3.8e-58 230.3 518 44.8
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 8.5e-58 229.2 536 43.8
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 1.4e-57 228.4 535 43.2
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 1.9e-57 228.0 539 43.6
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 2.1e-56 224.6 635 36.2
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 5.7e-54 216.5 275 48.4
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 6.3e-53 213.0 578 35.5
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 5.3e-52 209.9 590 34.9
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 2.2e-50 204.5 593 35.4
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 3.2e-49 200.7 595 35.0
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 1.6e-48 198.4 384 38.5
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 3.0e-47 194.1 514 36.8
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 8.8e-47 192.6 354 38.4
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 8.5e-42 176.0 298 41.3
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 5.5e-33 146.7 186 47.3
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 6.8e-31 139.8 544 35.5
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 2.4e-28 131.3 254 46.5
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 1.2e-27 129.0 527 31.9
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 1.0e-26 125.9 493 33.5
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 6.6e-26 123.2 138 51.4
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 6.6e-26 123.2 322 34.2
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 2.9e-21 107.8 532 28.8
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 6.4e-21 106.7 162 44.4
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 8.6e-18 96.3 489 29.4
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 8.6e-18 96.3 522 29.3
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 3.6e-16 90.9 160 39.4
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 5.2e-15 87.0 100 53.0
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 2.0e-14 85.1 97 50.5
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.4e-12 79.0 44 93.2
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.4e-12 79.0 44 93.2
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 1.4e-12 79.0 214 33.6
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 3.0e-10 71.2 132 40.9


User provided reference genes

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