Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000388.2 Cucumis melo HOM05D002560 ORTHO05D003782 2.1e-79 298.9 145 100.0
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 2.1e-79 298.9 145 100.0
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 1.4e-78 296.2 145 98.6
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 6.4e-76 287.3 145 95.2
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.0e-73 280.0 144 91.7
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 3.9e-73 278.1 144 92.4
COL.COLO4_08633 Corchorus olitorius HOM05D002560 ORTHO05D003782 5.6e-72 274.2 144 88.2
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 9.5e-72 273.5 147 89.8
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 3.6e-71 271.6 144 88.2
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 3.6e-71 271.6 144 89.6
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 4.7e-71 271.2 145 85.5
VMungo1383G3009 Vigna mungo HOM05D002560 ORTHO05D003782 4.7e-71 271.2 144 89.6
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 8.0e-71 270.4 144 87.5
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 8.0e-71 270.4 144 88.9
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 8.0e-71 270.4 144 88.9
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 8.0e-71 270.4 144 88.9
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 1.4e-70 269.6 144 88.2
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.8e-70 269.2 144 88.2
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 2.3e-70 268.9 144 87.5
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 3.1e-70 268.5 144 88.2
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 4.0e-70 268.1 144 86.8
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 4.0e-70 268.1 147 87.8
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 4.0e-70 268.1 145 86.9
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 5.2e-70 267.7 148 87.2
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 5.2e-70 267.7 144 88.9
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 8.9e-70 266.9 147 87.1
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 8.9e-70 266.9 144 85.4
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 1.2e-69 266.5 144 87.5
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 1.2e-69 266.5 147 87.1
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.2e-69 266.5 147 87.1
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.2e-69 266.5 147 87.1
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.2e-69 266.5 147 87.1
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.2e-69 266.5 147 87.1
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.5e-69 266.2 144 84.7
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 2.0e-69 265.8 144 86.1
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 2.0e-69 265.8 146 86.3
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 2.0e-69 265.8 144 86.8
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 3.4e-69 265.0 147 87.1
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 4.4e-69 264.6 144 85.4
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 5.8e-69 264.2 147 87.1
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 5.8e-69 264.2 144 86.8
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 7.5e-69 263.8 144 86.8
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 7.5e-69 263.8 144 84.7
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 7.5e-69 263.8 144 84.7
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 9.8e-69 263.5 144 85.4
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 1.3e-68 263.1 145 86.2
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.7e-68 262.7 144 82.6
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 1.7e-68 262.7 145 82.1
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 2.2e-68 262.3 144 85.4
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 2.9e-68 261.9 143 83.2
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 2.9e-68 261.9 144 86.1
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 2.9e-68 261.9 144 84.7
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 2.9e-68 261.9 144 83.3
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 2.9e-68 261.9 144 84.0
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 3.7e-68 261.5 144 83.3
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 4.9e-68 261.2 145 87.6
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 4.9e-68 261.2 151 84.1
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 4.9e-68 261.2 143 83.9
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 4.9e-68 261.2 145 82.8
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 6.4e-68 260.8 144 84.7
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 8.3e-68 260.4 144 83.3
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 8.3e-68 260.4 167 77.8
Actinidia32554 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.4e-67 259.6 144 83.3
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 1.4e-67 259.6 144 84.0
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 1.4e-67 259.6 188 71.3
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.9e-67 259.2 143 84.6
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 2.4e-67 258.8 143 83.2
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 2.4e-67 258.8 144 81.9
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 2.4e-67 258.8 144 81.9
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 2.4e-67 258.8 144 83.3
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 2.4e-67 258.8 144 83.3
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 3.2e-67 258.5 144 83.3
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 3.2e-67 258.5 144 82.6
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 3.2e-67 258.5 144 84.7
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 4.1e-67 258.1 144 83.3
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 5.4e-67 257.7 143 82.5
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 7.0e-67 257.3 143 82.5
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 7.0e-67 257.3 143 81.8
Lalb_Chr01g0023591 Lupinus albus HOM05D002560 ORTHO05D003782 9.2e-67 256.9 146 84.2
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 9.2e-67 256.9 145 84.1
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 1.6e-66 256.1 143 82.5
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 1.6e-66 256.1 144 83.3
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.6e-66 256.1 143 83.2
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 2.7e-66 255.4 143 81.8
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 2.7e-66 255.4 143 81.8
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 2.7e-66 255.4 143 81.8
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 2.7e-66 255.4 144 83.3
Lj2C63G17 Lonicera japonica HOM05D002560 ORTHO05D003782 2.7e-66 255.4 144 81.2
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 2.7e-66 255.4 144 81.2
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 3.5e-66 255.0 144 80.6
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 4.6e-66 254.6 143 80.4
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 6.0e-66 254.2 143 81.1
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 6.0e-66 254.2 143 80.4
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 6.0e-66 254.2 143 81.8
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 7.8e-66 253.8 144 82.6
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 7.8e-66 253.8 144 80.6
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 1.3e-65 253.1 145 84.1
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 1.7e-65 252.7 144 81.2
Phvul.008G088100 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 3.0e-65 251.9 144 82.6
CARHR212130 Cardamine hirsuta HOM05D002560 ORTHO05D003782 3.9e-65 251.5 145 80.7
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 3.9e-65 251.5 143 79.7
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 5.0e-65 251.1 145 80.0
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 6.6e-65 250.8 144 80.6
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 6.6e-65 250.8 157 77.7
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 1.1e-64 250.0 140 82.9
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 2.5e-64 248.8 144 79.2
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 4.3e-64 248.1 142 81.0
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 4.3e-64 248.1 144 81.9
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 9.5e-64 246.9 151 76.2
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 9.5e-64 246.9 151 76.2
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 9.5e-64 246.9 142 80.3
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 9.5e-64 246.9 144 79.9
AT5G01770 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 1.2e-63 246.5 144 80.6
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 1.6e-63 246.1 144 79.9
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 2.1e-63 245.7 142 81.7
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 2.1e-63 245.7 144 79.9
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 2.1e-63 245.7 148 78.4
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 4.7e-63 244.6 144 78.5
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 6.2e-63 244.2 143 79.7
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 6.2e-63 244.2 144 79.2
arahy.Tifrunner.gnm1.ann1.D1231E Arachis hypogaea HOM05D002560 ORTHO05D003782 8.1e-63 243.8 129 89.1
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 1.1e-62 243.4 144 77.1
CAN.G133.1 Capsicum annuum HOM05D002560 ORTHO05D003782 1.1e-62 243.4 144 77.1
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 1.4e-62 243.0 144 77.8
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 1.4e-62 243.0 144 80.6
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 1.8e-62 242.7 144 77.1
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 3.1e-62 241.9 144 78.5
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 5.2e-62 241.1 142 80.3
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 1.5e-61 239.6 144 76.4
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 2.6e-61 238.8 142 80.3
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 9.9e-61 236.9 144 76.4
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 2.2e-60 235.7 144 76.4
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 2.2e-60 235.7 144 75.7
AUR62006330 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.4e-59 233.0 144 75.7
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.4e-59 233.0 144 76.4
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 4.1e-59 231.5 144 75.7
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 1.6e-58 229.6 144 75.7
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 4.6e-58 228.0 165 70.3
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 1.5e-56 223.0 144 75.0
AUR62029728 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.9e-56 222.6 144 72.2
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 3.3e-56 221.9 144 73.6
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 5.6e-56 221.1 144 72.9
Haze_01994 Corylus avellana HOM05D002560 ORTHO05D003782 1.1e-54 216.9 136 77.9
CSS0033860 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.8e-54 216.1 143 69.2
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 1.8e-54 216.1 140 72.1
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 3.1e-54 215.3 140 71.4
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 3.4e-53 211.8 145 64.8
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 1.3e-52 209.9 143 67.8
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.7e-52 209.5 190 60.0
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.7e-52 209.5 143 64.3
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 2.2e-52 209.1 143 68.5
Os11g0109933 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 9.2e-51 203.8 143 67.1
TAR636G3231 Trochodendron aralioides HOM05D002560 ORTHO05D003782 9.2e-51 203.8 120 80.8
Zm00001eb195140 Zea mays HOM05D002560 ORTHO05D003782 1.2e-50 203.4 143 67.1
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 2.1e-50 202.6 144 61.8
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 7.8e-50 200.7 144 63.2
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.0e-49 200.3 141 61.7
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 1.0e-49 200.3 143 65.7
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 6.6e-49 197.6 143 66.4
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 8.7e-49 197.2 143 59.4
Sopen10g027940 Solanum pennellii HOM05D002560 ORTHO05D003782 6.2e-47 191.0 114 75.4
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 1.5e-45 186.4 141 66.0
HanXRQChr10g0288611 Helianthus annuus HOM05D002560 ORTHO05D003782 2.6e-45 185.7 148 62.8
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 1.3e-44 183.3 144 57.6
Cpa.g.sc86.8 Carica papaya HOM05D002560 ORTHO05D003782 2.1e-42 176.0 91 89.0
vmacro20346 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 6.0e-42 174.5 193 51.3
Cpa.g.sc86.11 Carica papaya HOM05D002560 ORTHO05D013637 3.9e-33 145.2 80 81.2
Lsat_1_v5_gn_7_60421 Lactuca sativa HOM05D002560 ORTHO05D003782 2.2e-28 129.4 78 71.8
Atru.chr8.2364 Acer truncatum HOM05D002560 ORTHO05D003782 1.9e-27 126.3 67 86.6
HanXRQChr17g0557111 Helianthus annuus HOM05D002560 ORTHO05D003782 3.3e-24 115.5 77 67.5
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 9.6e-24 114.0 147 37.4
RcHm_v2.0_Chr3g0492281 Rosa chinensis HOM05D002560 ORTHO05D003782 4.8e-23 111.7 68 79.4
MD12G1183800 Malus domestica HOM05D002560 ORTHO05D003782 2.6e-21 105.9 53 88.7
CBR_g54859 Chara braunii HOM05D000019 ORTHO05D000353 3.8e-12 75.5 91 35.2
Cfa024140 Carpinus fangiana HOM05D002560 ORTHO05D003782 6.5e-12 74.7 132 28.0
PRCOL_00002325 Prasinoderma coloniale HOM05D002560 ORTHO05D003782 7.2e-11 71.2 168 26.8
GSVIVG01030230001 Vitis vinifera HOM05D002560 ORTHO05D003782 7.4e-08 61.2 33 78.8


User provided reference genes

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