Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.0e-31 139.4 70 100.0
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 5.1e-31 137.1 70 98.6
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.1e-30 136.0 70 97.1
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 4.1e-28 127.5 70 90.0
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 4.1e-28 127.5 70 91.4
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 4.1e-28 127.5 70 90.0
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 4.1e-28 127.5 70 88.6
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 6.9e-28 126.7 70 88.6
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 2.0e-27 125.2 70 87.1
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 2.6e-27 124.8 70 87.1
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 3.4e-27 124.4 70 88.6
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 3.4e-27 124.4 64 98.4
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 3.4e-27 124.4 70 88.6
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 3.4e-27 124.4 70 87.1
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 3.4e-27 124.4 70 87.1
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 4.5e-27 124.0 70 84.3
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 4.5e-27 124.0 70 87.1
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 4.5e-27 124.0 70 88.6
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 5.9e-27 123.6 70 87.1
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 5.9e-27 123.6 70 85.7
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 5.9e-27 123.6 70 85.7
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.7e-27 123.2 70 87.1
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 7.7e-27 123.2 70 87.1
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 7.7e-27 123.2 70 87.1
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 1.0e-26 122.9 70 87.1
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.0e-26 122.9 70 84.3
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 1.0e-26 122.9 70 87.1
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 1.0e-26 122.9 70 82.9
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 1.3e-26 122.5 70 82.9
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 1.3e-26 122.5 70 82.9
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.3e-26 122.5 70 87.1
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.3e-26 122.5 70 87.1
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.7e-26 122.1 70 85.7
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 1.7e-26 122.1 70 82.9
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.7e-26 122.1 70 85.7
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 1.7e-26 122.1 70 85.7
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 1.7e-26 122.1 70 85.7
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.7e-26 122.1 70 85.7
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.7e-26 122.1 70 85.7
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.2e-26 121.7 70 84.3
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 2.2e-26 121.7 70 81.4
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.2e-26 121.7 70 84.3
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.9e-26 121.3 70 84.3
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 2.9e-26 121.3 70 84.3
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 2.9e-26 121.3 70 84.3
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 3.8e-26 120.9 70 85.7
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 3.8e-26 120.9 70 85.7
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.0e-26 120.6 70 82.9
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 5.0e-26 120.6 70 82.9
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 6.5e-26 120.2 70 85.7
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 6.5e-26 120.2 70 82.9
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 6.5e-26 120.2 70 80.0
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 8.5e-26 119.8 70 82.9
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 8.5e-26 119.8 70 82.9
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.1e-25 119.4 70 82.9
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 1.1e-25 119.4 70 81.4
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.1e-25 119.4 70 82.9
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 84.3
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.4e-25 119.0 69 85.5
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.4e-25 119.0 70 82.9
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.9e-25 118.6 70 81.4
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.9e-25 118.6 70 82.9
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.9e-25 118.6 70 81.4
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 2.5e-25 118.2 70 81.4
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 2.5e-25 118.2 70 81.4
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 3.2e-25 117.9 69 84.1
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 3.2e-25 117.9 70 82.9
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 3.2e-25 117.9 70 81.4
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 3.2e-25 117.9 70 81.4
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 3.2e-25 117.9 70 81.4
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 3.2e-25 117.9 70 81.4
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.2e-25 117.9 70 84.3
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 4.2e-25 117.5 68 83.8
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 4.2e-25 117.5 70 81.4
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 4.2e-25 117.5 70 82.9
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 5.5e-25 117.1 70 80.0
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.5e-25 117.1 70 80.0
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 5.5e-25 117.1 70 80.0
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.5e-25 117.1 70 80.0
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.5e-25 117.1 70 80.0
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 7.2e-25 116.7 70 77.1
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 9.4e-25 116.3 70 81.4
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 9.4e-25 116.3 70 81.4
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 9.4e-25 116.3 70 80.0
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.4e-25 116.3 70 78.6
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.4e-25 116.3 70 78.6
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.4e-25 116.3 70 78.6
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 9.4e-25 116.3 70 81.4
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.2e-24 115.9 70 82.9
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-24 115.5 70 80.0
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.6e-24 115.5 70 78.6
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 2.7e-24 114.8 70 80.0
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 3.6e-24 114.4 70 74.3
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 3.6e-24 114.4 70 78.6
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.7e-24 114.0 70 77.1
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 6.1e-24 113.6 70 78.6
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 7.9e-24 113.2 70 78.6
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 7.9e-24 113.2 70 78.6
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.0e-23 112.8 70 78.6
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 1.4e-23 112.5 70 80.0
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 1.4e-23 112.5 70 80.0
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.8e-23 112.1 70 78.6
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.8e-23 112.1 70 78.6
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.8e-23 112.1 70 78.6
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-23 112.1 70 77.1
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.3e-23 111.7 70 77.1
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.0e-23 111.3 70 75.7
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 2.6e-22 108.2 70 74.3
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 3.3e-22 107.8 76 72.4
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.4e-22 107.5 65 76.9
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 5.7e-22 107.1 80 70.0
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 5.7e-22 107.1 70 75.7
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.4e-22 106.7 65 75.4
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 1.7e-21 105.5 70 77.1
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.2e-21 105.1 65 75.4
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 2.8e-21 104.8 70 72.9
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.8e-21 104.8 70 78.6
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 6.9e-20 100.1 70 68.6
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 9.1e-20 99.8 70 70.0
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.2e-19 99.4 69 69.6
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 2.0e-19 98.6 70 68.6
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 2.0e-19 98.6 110 50.0
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 2.6e-19 98.2 75 64.0
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 4.5e-19 97.4 70 70.0
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 5.9e-19 97.1 70 67.1
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 5.9e-19 97.1 70 68.6
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 7.7e-19 96.7 63 77.8
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 2.9e-18 94.7 69 62.3
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.9e-17 92.0 69 66.7
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 5.5e-17 90.5 69 60.9
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 9.4e-17 89.7 53 81.1
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 9.4e-17 89.7 53 81.1
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 2.1e-16 88.6 69 59.4
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 2.1e-16 88.6 53 81.1
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 4.7e-16 87.4 70 67.1
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.3e-13 79.3 70 64.3
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 3.7e-13 77.8 47 80.9
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 5.3e-12 73.9 69 53.6
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 3.8e-10 67.8 69 46.4
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 5.5e-09 63.9 34 82.4
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 8.0e-08 60.1 41 68.3
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.4e-07 59.3 38 81.6
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.3e-07 58.5 43 69.8
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.3e-07 58.5 43 69.8
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 3.0e-07 58.2 32 81.2
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.0e-07 57.8 32 81.2
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 2.0e-06 55.5 69 37.7
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 5.7e-06 53.9 69 34.8


User provided reference genes

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