Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000240.2 Cucumis melo HOM05D001600 ORTHO05D001502 8.1e-31 136.3 65 100.0
MELO3C031742.2 Cucumis melo HOM05D001600 ORTHO05D001502 6.9e-30 133.3 65 96.9
MELO3C027507.2 Cucumis melo HOM05D001600 ORTHO05D001502 1.9e-27 125.2 65 92.3
MELO3C014928.2 Cucumis melo HOM05D001600 ORTHO05D001502 3.8e-20 100.9 48 100.0
ClCG02G003530 Citrullus lanatus HOM05D001600 ORTHO05D001502 2.7e-10 68.2 34 94.1
MELO3C013260.2 Cucumis melo HOM05D001600 ORTHO05D001502 2.7e-10 68.2 34 94.1
CsaV3_7G001770 Cucumis sativus L. HOM05D001600 ORTHO05D001502 2.7e-10 68.2 34 94.1
Sed0002252 Sechium edule HOM05D001600 ORTHO05D001502 3.5e-10 67.8 34 91.2
Nn6g31727 Nelumbo nucifera HOM05D001600 ORTHO05D001502 1.5e-08 62.4 33 87.9
Aa31LG6G16780 Aethionema arabicum HOM05D001600 ORTHO05D001502 1.9e-08 62.0 34 85.3
AL7G10230 Arabidopsis lyrata HOM05D001600 ORTHO05D001502 1.9e-08 62.0 34 85.3
BcaNung01316 Brassica carinata HOM05D001600 ORTHO05D001502 1.9e-08 62.0 34 85.3
BcaNung04225 Brassica carinata HOM05D001600 ORTHO05D001502 1.9e-08 62.0 34 85.3
BNapus_Darmor_BZH_scaffold_146p00130 Brassica napus HOM05D001600 ORTHO05D001502 1.9e-08 62.0 34 85.3
BolC1t00004H Brassica oleracea HOM05D001600 ORTHO05D001502 1.9e-08 62.0 34 85.3
BraA01t00002Z Brassica rapa HOM05D001600 ORTHO05D001502 1.9e-08 62.0 34 85.3
Carub.0007s0025 Capsella rubella HOM05D001600 ORTHO05D001502 1.9e-08 62.0 34 85.3
Cpa.g.sc20.201 Carica papaya HOM05D001600 ORTHO05D001502 1.9e-08 62.0 34 85.3
Thhalv10025065m.g Eutrema salsugineum HOM05D001600 ORTHO05D001502 1.9e-08 62.0 34 85.3
Glyma.04G001400 Glycine max HOM05D001600 ORTHO05D001502 1.9e-08 62.0 34 85.3
PSO541G1405 Papaver somniferum HOM05D001600 ORTHO05D001502 1.9e-08 62.0 33 84.8
PSO675G3620 Papaver somniferum HOM05D001600 ORTHO05D001502 1.9e-08 62.0 33 84.8
Sp7g37410 Schrenkiella parvula HOM05D001600 ORTHO05D001502 1.9e-08 62.0 34 85.3
CiPaw.06G118300 Carya illinoinensis HOM05D001600 ORTHO05D001502 2.5e-08 61.6 33 84.8
ATR0661G341 Amborella trichopoda HOM05D001600 ORTHO05D001502 4.3e-08 60.8 33 84.8
CARHR294100 Cardamine hirsuta HOM05D001600 ORTHO05D001502 4.3e-08 60.8 34 85.3
CiPaw.05G088600 Carya illinoinensis HOM05D001600 ORTHO05D001502 4.3e-08 60.8 33 84.8
Nn5g30953 Nelumbo nucifera HOM05D001600 ORTHO05D001502 4.3e-08 60.8 33 84.8
AT4G38360 Arabidopsis thaliana HOM05D001600 ORTHO05D001502 5.7e-08 60.5 34 82.4
Duzib052G0454 Durio zibethinus HOM05D001600 ORTHO05D001502 5.7e-08 60.5 49 63.3
Glyma.06G000800 Glycine max HOM05D001600 ORTHO05D001502 5.7e-08 60.5 34 82.4
PGR142G3536 Punica granatum HOM05D001600 ORTHO05D001502 5.7e-08 60.5 32 87.5
Thecc.02G045700 Theobroma cacao HOM05D001600 ORTHO05D001502 5.7e-08 60.5 49 63.3
Atru.chr5.3528 Acer truncatum HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
Actinidia33699 Actinidia chinensis HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
Aqoxy6G01704 Aquilegia oxysepala HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
BcaNung01989 Brassica carinata HOM05D001600 ORTHO05D001502 7.4e-08 60.1 34 82.4
C07p63790 Brassica napus HOM05D001600 ORTHO05D001502 7.4e-08 60.1 34 82.4
BolC7t46789H Brassica oleracea HOM05D001600 ORTHO05D001502 7.4e-08 60.1 34 82.4
BraA06t27773Z Brassica rapa HOM05D001600 ORTHO05D001502 7.4e-08 60.1 34 82.4
Ca_15275_v3 Cicer arietinum L. HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
Ciclev10028324m.g Citrus clementina HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
Dinv15483 Davidia involucrata HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
Lj1g0014703 Lotus japonicus HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
Lalb_Chr08g0246821 Lupinus albus HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
Medtr3g118470 Medicago truncatula HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
Phvul.009G116100 Phaseolus vulgaris HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
Psat5g000640 Pisum sativum HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
Prupe.8G177700 Prunus persica HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
THA.LOC104807796 Tarenaya hassleriana HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
TAR381G0958 Trochodendron aralioides HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
VMungo1309G0169 Vigna mungo HOM05D001600 ORTHO05D001502 7.4e-08 60.1 33 84.8
CDE07G0049 Ceratophyllum demersum HOM05D001600 ORTHO05D001502 9.7e-08 59.7 33 81.8
Manes.11G107201 Manihot esculenta HOM05D001600 ORTHO05D001502 9.7e-08 59.7 34 82.4
Zm00001eb228540 Zea mays HOM05D001600 ORTHO05D001502 9.7e-08 59.7 33 81.8
Zm00001eb272020 Zea mays HOM05D001600 ORTHO05D001502 9.7e-08 59.7 33 81.8
Haze_02055 Corylus avellana HOM05D001600 ORTHO05D001502 1.3e-07 59.3 33 81.8
Duzib132G0017 Durio zibethinus HOM05D001600 ORTHO05D001502 1.3e-07 59.3 33 81.8
Eucgr.I01512 Eucalyptus grandis HOM05D001600 ORTHO05D001502 1.3e-07 59.3 33 81.8
GSVIVG01023892001 Vitis vinifera HOM05D001600 ORTHO05D001502 1.3e-07 59.3 33 84.8
CAN.G248.51 Capsicum annuum HOM05D001600 ORTHO05D001502 1.6e-07 58.9 34 82.4
Os06g0726600 Oryza sativa ssp. japonica HOM05D001600 ORTHO05D001502 1.6e-07 58.9 33 84.8
Solyc07g054320.3 Solanum lycopersicum HOM05D001600 ORTHO05D001502 1.6e-07 58.9 34 82.4
Sopen07g028270 Solanum pennellii HOM05D001600 ORTHO05D001502 1.6e-07 58.9 34 82.4
Gorai.008G040600 Gossypium raimondii HOM05D001600 ORTHO05D001502 2.2e-07 58.5 48 62.5
Lalb_Chr23g0264891 Lupinus albus HOM05D001600 ORTHO05D001502 2.2e-07 58.5 33 81.8
MBI08_g24271_MAGBIO Magnolia biondii HOM05D001600 ORTHO05D001502 2.2e-07 58.5 33 78.8
Nitab4.5_0005244g0090 Nicotiana tabacum HOM05D001600 ORTHO05D001502 2.2e-07 58.5 34 82.4
QL11p053918 Quercus lobata HOM05D001600 ORTHO05D001502 2.2e-07 58.5 33 81.8
Rhsim13G0133900 Rhododendron simsii HOM05D001600 ORTHO05D001502 2.2e-07 58.5 33 81.8
TPR.G38525 Trifolium pratense HOM05D001600 ORTHO05D001502 2.2e-07 58.5 33 81.8
Ah.01g023700 Amaranthus hybridus HOM05D001600 ORTHO05D001502 2.8e-07 58.2 33 78.8
Gohir.A03G209300 Gossypium hirsutum HOM05D001600 ORTHO05D001502 2.8e-07 58.2 34 79.4
Gohir.A12G033800 Gossypium hirsutum HOM05D001600 ORTHO05D001502 2.8e-07 58.2 48 62.5
Gohir.D02G231000 Gossypium hirsutum HOM05D001600 ORTHO05D001502 2.8e-07 58.2 34 79.4
Gorai.005G258600 Gossypium raimondii HOM05D001600 ORTHO05D001502 2.8e-07 58.2 34 79.4
Migut.H01021 Erythranthe guttata HOM05D001600 ORTHO05D001502 3.7e-07 57.8 33 81.8
FvH4_2g16560 Fragaria vesca HOM05D001600 ORTHO05D001502 3.7e-07 57.8 33 81.8
Lsat_1_v5_gn_4_69600 Lactuca sativa HOM05D001600 ORTHO05D001502 3.7e-07 57.8 33 81.8
Peaxi162Scf00132g00720 Petunia axillaris HOM05D001600 ORTHO05D001502 3.7e-07 57.8 34 79.4
Potri.004G204600 Populus trichocarpa HOM05D001600 ORTHO05D001502 3.7e-07 57.8 33 81.8
Potri.009G165600 Populus trichocarpa HOM05D001600 ORTHO05D001502 3.7e-07 57.8 33 81.8
RcHm_v2.0_Chr6g0280631 Rosa chinensis HOM05D001600 ORTHO05D001502 3.7e-07 57.8 33 81.8
Sabra04G0138100 Salix brachista HOM05D001600 ORTHO05D001502 3.7e-07 57.8 33 81.8
Sabra09G0129400 Salix brachista HOM05D001600 ORTHO05D001502 3.7e-07 57.8 33 81.8
Solyc12g005590.2 Solanum lycopersicum HOM05D001600 ORTHO05D001502 3.7e-07 57.8 34 79.4
Sopen12g001540 Solanum pennellii HOM05D001600 ORTHO05D001502 3.7e-07 57.8 34 79.4
PGSC0003DMG400013749 Solanum tuberosum HOM05D001600 ORTHO05D001502 3.7e-07 57.8 34 79.4
SGA_v2.0_scaffold49G18306 Striga asiatica HOM05D001600 ORTHO05D001502 3.7e-07 57.8 33 81.8
Os04g0563100 Oryza sativa ssp. japonica HOM05D001600 ORTHO05D001502 4.8e-07 57.4 33 78.8
HPP92_025976 Vanilla planifolia HOM05D001600 ORTHO05D001502 4.8e-07 57.4 33 81.8
arahy.Tifrunner.gnm1.ann1.E6G5ZN Arachis hypogaea HOM05D001600 ORTHO05D001502 6.3e-07 57.0 33 78.8
arahy.Tifrunner.gnm1.ann1.KU9ZEY Arachis hypogaea HOM05D001600 ORTHO05D001502 6.3e-07 57.0 33 78.8
BraSC56t46382Z Brassica rapa HOM05D001600 ORTHO05D001502 6.3e-07 57.0 33 78.8
CAN.G980.16 Capsicum annuum HOM05D001600 ORTHO05D001502 6.3e-07 57.0 34 76.5
Gohir.A01G174200 Gossypium hirsutum HOM05D001600 ORTHO05D001502 6.3e-07 57.0 49 61.2
Gohir.D01G165400 Gossypium hirsutum HOM05D001600 ORTHO05D001502 6.3e-07 57.0 49 61.2
Gohir.D12G038700 Gossypium hirsutum HOM05D001600 ORTHO05D001502 6.3e-07 57.0 31 83.9
Gorai.002G205800 Gossypium raimondii HOM05D001600 ORTHO05D001502 6.3e-07 57.0 49 61.2
MD05G1133900 Malus domestica HOM05D001600 ORTHO05D001502 6.3e-07 57.0 33 81.8
Os02g0670000 Oryza sativa ssp. japonica HOM05D001600 ORTHO05D001502 6.3e-07 57.0 33 75.8
Sc18g0005970 Simmondsia chinensis HOM05D001600 ORTHO05D001502 6.3e-07 57.0 33 78.8
EL10Ac9g21251 Beta vulgaris HOM05D001600 ORTHO05D001502 8.2e-07 56.6 33 75.8
Oeu041301.1 Olea europaea HOM05D001600 ORTHO05D001502 8.2e-07 56.6 33 81.8
Hund21122 Selenicereus undatus HOM05D001600 ORTHO05D001502 8.2e-07 56.6 33 78.8
SEGI_32464 Sequoiadendron giganteum HOM05D001600 ORTHO05D001502 8.2e-07 56.6 33 81.8
unitig_21.g19999 Utricularia gibba HOM05D001600 ORTHO05D001502 8.2e-07 56.6 33 78.8
vmacro03557 Vaccinium macrocarpon HOM05D001600 ORTHO05D001502 8.2e-07 56.6 33 78.8
MSTRG.14183 Avicennia marina HOM05D001600 ORTHO05D001502 1.1e-06 56.2 33 78.8
Dinv23705 Davidia involucrata HOM05D001600 ORTHO05D001502 1.1e-06 56.2 33 78.8
Nitab4.5_0004216g0010 Nicotiana tabacum HOM05D001600 ORTHO05D001502 1.1e-06 56.2 34 79.4
TWI31G0217 Tripterygium wilfordii HOM05D001600 ORTHO05D001502 1.1e-06 56.2 32 81.2
TWI75G0469 Tripterygium wilfordii HOM05D001600 ORTHO05D001502 1.1e-06 56.2 32 81.2
CSS0015747 Camellia sinensis var. sinensis HOM05D001600 ORTHO05D001502 1.4e-06 55.8 33 78.8
CANSAT25G3809 Cannabis sativa HOM05D001600 ORTHO05D001502 1.4e-06 55.8 33 78.8
Lsat_1_v5_gn_1_7381 Lactuca sativa HOM05D001600 ORTHO05D001502 1.4e-06 55.8 33 75.8
Nitab4.5_0001090g0060 Nicotiana tabacum HOM05D001600 ORTHO05D001502 1.4e-06 55.8 33 78.8
Nitab4.5_0005380g0020 Nicotiana tabacum HOM05D001600 ORTHO05D001502 1.4e-06 55.8 33 78.8
Gohir.A01G001500 Gossypium hirsutum HOM05D001600 ORTHO05D001502 1.8e-06 55.5 49 59.2
Gohir.D01G001200 Gossypium hirsutum HOM05D001600 ORTHO05D001502 1.8e-06 55.5 49 59.2
Gorai.002G001700 Gossypium raimondii HOM05D001600 ORTHO05D001502 1.8e-06 55.5 49 59.2
AUR62011706 Chenopodium quinoa HOM05D001600 ORTHO05D001502 4.1e-06 54.3 33 72.7
AUR62012924 Chenopodium quinoa HOM05D001600 ORTHO05D001502 4.1e-06 54.3 33 72.7
HanXRQChr10g0295371 Helianthus annuus HOM05D001600 ORTHO05D001502 4.1e-06 54.3 32 78.1
Lsat_1_v5_gn_3_39640 Lactuca sativa HOM05D001600 ORTHO05D001502 4.1e-06 54.3 33 75.8
MD10G1138900 Malus domestica HOM05D001600 ORTHO05D001502 4.1e-06 54.3 33 78.8
Nn5g28640 Nelumbo nucifera HOM05D001600 ORTHO05D001502 4.1e-06 54.3 33 75.8
Cc05_g06380 Coffea canephora HOM05D001600 ORTHO05D001502 5.3e-06 53.9 32 78.1
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 6.9e-06 53.5 33 72.7
HanXRQChr15g0480371 Helianthus annuus HOM05D001600 ORTHO05D001502 6.9e-06 53.5 33 75.8
Zm00001eb073930 Zea mays HOM05D001600 ORTHO05D001502 6.9e-06 53.5 33 75.8
Potri.002G071400 Populus trichocarpa HOM05D001600 ORTHO05D001502 9.0e-06 53.1 33 75.8
Thecc.09G074500 Theobroma cacao HOM05D001600 ORTHO05D001502 9.0e-06 53.1 32 75.0


User provided reference genes

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