Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000192.2 Cucumis melo HOM05D000060 ORTHO05D000428 2.2e-56 222.2 126 100.0
CsaV3_6G006130 Cucumis sativus L. HOM05D000060 ORTHO05D000428 2.2e-56 222.2 126 99.2
ClCG06G000340 Citrullus lanatus HOM05D000060 ORTHO05D000428 2.6e-49 198.7 126 92.9
Sed0016554 Sechium edule HOM05D000060 ORTHO05D000428 3.2e-39 165.2 128 78.9
Duzib138G0275 Durio zibethinus HOM05D000060 ORTHO05D000428 1.9e-36 156.0 128 75.8
COL.COLO4_12557 Corchorus olitorius HOM05D000060 ORTHO05D000428 5.6e-36 154.5 133 72.2
Duzib133G0837 Durio zibethinus HOM05D000060 ORTHO05D000428 5.8e-33 144.4 128 70.3
Thecc.01G375200 Theobroma cacao HOM05D000060 ORTHO05D000428 9.9e-33 143.7 131 71.0
Manes.05G044500 Manihot esculenta HOM05D000060 ORTHO05D000428 1.3e-32 143.3 131 68.7
Gohir.A08G133900 Gossypium hirsutum HOM05D000060 ORTHO05D000428 1.4e-31 139.8 135 71.9
Gohir.D08G155100 Gossypium hirsutum HOM05D000060 ORTHO05D000428 1.4e-31 139.8 135 71.9
Gorai.004G161100 Gossypium raimondii HOM05D000060 ORTHO05D000428 1.9e-31 139.4 134 71.6
Ciclev10021992m.g Citrus clementina HOM05D000060 ORTHO05D000428 6.0e-30 134.4 132 65.9
Cfa001709 Carpinus fangiana HOM05D000060 ORTHO05D000428 1.7e-29 132.9 127 68.5
CiPaw.01G261300 Carya illinoinensis HOM05D000060 ORTHO05D000428 1.5e-28 129.8 133 61.7
Manes.01G265300 Manihot esculenta HOM05D000060 ORTHO05D000428 3.3e-28 128.6 134 64.2
PGR042G0998 Punica granatum HOM05D000060 ORTHO05D000428 3.3e-28 128.6 135 63.7
CANSAT56G0462 Cannabis sativa HOM05D000060 ORTHO05D000428 4.3e-28 128.3 137 60.6
Sabra14G0050100 Salix brachista HOM05D000060 ORTHO05D000428 7.3e-28 127.5 133 63.2
Potri.014G070400 Populus trichocarpa HOM05D000060 ORTHO05D000428 9.6e-28 127.1 133 66.2
GSVIVG01027621001 Vitis vinifera HOM05D000060 ORTHO05D000428 9.6e-28 127.1 138 67.4
Potri.002G149000 Populus trichocarpa HOM05D000060 ORTHO05D000428 1.2e-27 126.7 132 62.9
Hma1.2p1_1663F.1_g296330 Hydrangea macrophylla HOM05D000060 ORTHO05D000428 8.1e-27 124.0 127 65.4
Nitab4.5_0000457g0350 Nicotiana tabacum HOM05D000060 ORTHO05D000428 8.1e-27 124.0 134 57.5
Hund27351 Selenicereus undatus HOM05D000060 ORTHO05D000428 8.1e-27 124.0 133 65.4
TWI59G1248 Tripterygium wilfordii HOM05D000060 ORTHO05D000428 1.1e-26 123.6 140 64.3
Haze_16824 Corylus avellana HOM05D000060 ORTHO05D000428 1.4e-26 123.2 127 66.1
Eucgr.E01414 Eucalyptus grandis HOM05D000060 ORTHO05D000428 1.4e-26 123.2 130 66.2
Rhsim07G0027100 Rhododendron simsii HOM05D000060 ORTHO05D000428 2.4e-26 122.5 135 61.5
Sabra02G0117800 Salix brachista HOM05D000060 ORTHO05D000428 2.4e-26 122.5 131 55.0
EL10Ac1g00905 Beta vulgaris HOM05D000060 ORTHO05D000428 4.0e-26 121.7 136 59.6
TAR636G1803 Trochodendron aralioides HOM05D000060 ORTHO05D000428 5.2e-26 121.3 125 60.8
TWI14G0493 Tripterygium wilfordii HOM05D000060 ORTHO05D000428 6.8e-26 120.9 132 56.8
Actinidia12263 Actinidia chinensis HOM05D000060 ORTHO05D000428 1.2e-25 120.2 131 57.3
Hma1.2p1_0660F.1_g197770 Hydrangea macrophylla HOM05D000060 ORTHO05D000428 3.4e-25 118.6 127 63.0
Hund17014 Selenicereus undatus HOM05D000060 ORTHO05D000428 4.4e-25 118.2 141 58.2
Gohir.A12G101966 Gossypium hirsutum HOM05D000060 ORTHO05D000428 9.9e-25 117.1 128 61.7
Gohir.D12G105100 Gossypium hirsutum HOM05D000060 ORTHO05D000428 9.9e-25 117.1 128 61.7
Dinv43719 Davidia involucrata HOM05D000060 ORTHO05D000428 1.3e-24 116.7 135 64.4
FAN03G1190 Fragaria x ananassa HOM05D000060 ORTHO05D000428 1.3e-24 116.7 135 56.3
Glyma.03G023000 Glycine max HOM05D000060 ORTHO05D000428 1.7e-24 116.3 134 60.4
RcHm_v2.0_Chr1g0350711 Rosa chinensis HOM05D000060 ORTHO05D000428 1.7e-24 116.3 139 59.7
Gorai.008G114400 Gossypium raimondii HOM05D000060 ORTHO05D000428 2.2e-24 115.9 128 60.9
Peaxi162Scf00021g01519 Petunia axillaris HOM05D000060 ORTHO05D000428 6.4e-24 114.4 137 58.4
Sed0004990 Sechium edule HOM05D000060 ORTHO05D000428 6.4e-24 114.4 132 56.1
FvH4_7g11990 Fragaria vesca HOM05D000060 ORTHO05D000428 8.4e-24 114.0 134 61.2
FAN06G2205 Fragaria x ananassa HOM05D000060 ORTHO05D000428 8.4e-24 114.0 134 61.2
FAN06G2546 Fragaria x ananassa HOM05D000060 ORTHO05D000428 8.4e-24 114.0 134 61.2
FAN10G2467 Fragaria x ananassa HOM05D000060 ORTHO05D000428 8.4e-24 114.0 134 61.2
Nitab4.5_0007537g0010 Nicotiana tabacum HOM05D000060 ORTHO05D000428 1.1e-23 113.6 136 54.4
FAN10G3335 Fragaria x ananassa HOM05D000060 ORTHO05D000428 1.4e-23 113.2 134 61.2
Atru.chr5.319 Acer truncatum HOM05D000060 ORTHO05D000428 5.4e-23 111.3 140 60.0
Glyma.01G143900 Glycine max HOM05D000060 ORTHO05D000428 7.1e-23 110.9 137 59.9
Nn1g01208 Nelumbo nucifera HOM05D000060 ORTHO05D000428 7.1e-23 110.9 129 52.7
CSS0046067 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D000428 2.1e-22 109.4 134 59.0
QL08p052181 Quercus lobata HOM05D000060 ORTHO05D000428 1.0e-21 107.1 86 67.4
CSS0043669 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D000428 2.3e-21 105.9 134 57.5
Solyc01g091420.2 Solanum lycopersicum HOM05D000060 ORTHO05D000428 5.1e-21 104.8 139 56.1
Sopen01g037180 Solanum pennellii HOM05D000060 ORTHO05D000428 5.6e-20 101.3 141 53.9
Aqoxy7G00602 Aquilegia oxysepala HOM05D000060 ORTHO05D000428 7.3e-20 100.9 111 58.6
FAN01G1441 Fragaria x ananassa HOM05D000060 ORTHO05D000428 7.3e-20 100.9 141 56.0
TPR.G21721 Trifolium pratense HOM05D000060 ORTHO05D000428 1.3e-19 100.1 121 52.1
TAR629G1694 Trochodendron aralioides HOM05D000060 ORTHO05D000428 1.6e-19 99.8 109 63.3
Psat4g195200 Pisum sativum HOM05D000060 ORTHO05D000428 2.1e-19 99.4 127 50.4
Glyma.18G221000 Glycine max HOM05D000060 ORTHO05D000428 2.8e-19 99.0 122 54.1
Lj9A571T73 Lonicera japonica HOM05D000060 ORTHO05D000428 4.8e-19 98.2 91 62.6
arahy.Tifrunner.gnm1.ann1.4ZP6RH Arachis hypogaea HOM05D000060 ORTHO05D000428 6.2e-19 97.8 144 54.2
Cc02_g36620 Coffea canephora HOM05D000060 ORTHO05D000428 1.1e-18 97.1 123 55.3
MD02G1202500 Malus domestica HOM05D000060 ORTHO05D000428 1.1e-18 97.1 139 56.1
Prupe.2G146600 Prunus persica HOM05D000060 ORTHO05D000428 1.1e-18 97.1 143 56.6
Medtr8g036085 Medicago truncatula HOM05D000060 ORTHO05D000428 1.8e-18 96.3 131 49.6
Glyma.09G268700 Glycine max HOM05D000060 ORTHO05D000428 2.4e-18 95.9 134 53.7
CAN.G388.4 Capsicum annuum HOM05D000060 ORTHO05D000428 1.2e-17 93.6 76 80.3
AL4G44590 Arabidopsis lyrata HOM05D000060 ORTHO05D000428 1.5e-17 93.2 138 51.4
Phvul.008G075900 Phaseolus vulgaris HOM05D000060 ORTHO05D000428 1.5e-17 93.2 127 47.2
AT2G45420 Arabidopsis thaliana HOM05D000060 ORTHO05D000428 2.0e-17 92.8 140 54.3
Lj3g0018337 Lotus japonicus HOM05D000060 ORTHO05D000428 2.0e-17 92.8 132 49.2
CARHR140610 Cardamine hirsuta HOM05D000060 ORTHO05D000428 2.6e-17 92.4 136 49.3
vmacro13393 Vaccinium macrocarpon HOM05D000060 ORTHO05D000428 2.6e-17 92.4 94 56.4
BcaB02g08982 Brassica carinata HOM05D000060 ORTHO05D000428 4.4e-17 91.7 136 47.8
Sp4g27450 Schrenkiella parvula HOM05D000060 ORTHO05D000428 4.4e-17 91.7 141 51.1
DCAR_008562 Daucus carota HOM05D000060 ORTHO05D000428 7.6e-17 90.9 145 46.2
BcaC02g07094 Brassica carinata HOM05D000060 ORTHO05D000428 1.7e-16 89.7 137 54.7
C04p71550 Brassica napus HOM05D000060 ORTHO05D000428 1.7e-16 89.7 137 54.7
BolC4t28660H Brassica oleracea HOM05D000060 ORTHO05D000428 1.7e-16 89.7 137 54.7
Zm00001eb398670 Zea mays HOM05D000060 ORTHO05D000428 1.7e-16 89.7 126 53.2
SalBow5G5088 Salvia bowleyana HOM05D040324 ORTHO05D000428 4.9e-16 88.2 126 49.2
PGSC0003DMG401012772 Solanum tuberosum HOM05D000060 ORTHO05D000428 6.4e-16 87.8 95 55.8
Sp6g00280 Schrenkiella parvula HOM05D000060 ORTHO05D000428 1.1e-15 87.0 131 47.3
VMungo1383G3439 Vigna mungo HOM05D000060 ORTHO05D000428 1.1e-15 87.0 127 47.2
BcaB01g02227 Brassica carinata HOM05D000060 ORTHO05D000428 1.4e-15 86.7 133 47.4
Oeu037911.2 Olea europaea HOM05D000060 ORTHO05D000428 1.4e-15 86.7 129 48.8
Carub.0006s3700 Capsella rubella HOM05D000060 ORTHO05D000428 1.9e-15 86.3 119 51.3
BcaC02g12209 Brassica carinata HOM05D000060 ORTHO05D000428 5.4e-15 84.7 137 45.3
C04p06390 Brassica napus HOM05D000060 ORTHO05D000428 5.4e-15 84.7 137 45.3
BolC4t22262H Brassica oleracea HOM05D000060 ORTHO05D000428 5.4e-15 84.7 137 45.3
PSO782G3421 Papaver somniferum HOM05D000060 ORTHO05D000428 5.4e-15 84.7 139 43.9
A04p33810 Brassica napus HOM05D000060 ORTHO05D000428 9.3e-15 84.0 140 50.0
BraA04t18842Z Brassica rapa HOM05D000060 ORTHO05D000428 9.3e-15 84.0 140 50.0
A05p05450 Brassica napus HOM05D000060 ORTHO05D000428 1.2e-14 83.6 137 44.5
Lsat_1_v5_gn_3_132740 Lactuca sativa HOM05D000060 ORTHO05D000428 2.1e-14 82.8 129 45.0
BraA05t19515Z Brassica rapa HOM05D000060 ORTHO05D000428 2.7e-14 82.4 137 43.8
arahy.Tifrunner.gnm1.ann1.NJF8NY Arachis hypogaea HOM05D000060 ORTHO05D000428 4.6e-14 81.6 144 51.4
SGA_v2.0_scaffold153G37019 Striga asiatica HOM05D000060 ORTHO05D000428 4.6e-14 81.6 122 47.5
DCAR_006869 Daucus carota HOM05D000060 ORTHO05D000428 6.0e-14 81.3 141 44.7
A09p00660 Brassica napus HOM05D000060 ORTHO05D000428 7.9e-14 80.9 129 47.3
C09p00200 Brassica napus HOM05D000060 ORTHO05D000428 7.9e-14 80.9 129 47.3
BraA09t35694Z Brassica rapa HOM05D000060 ORTHO05D000428 7.9e-14 80.9 129 47.3
CARHR248270 Cardamine hirsuta HOM05D000060 ORTHO05D000428 7.9e-14 80.9 106 51.9
Thhalv10001791m.g Eutrema salsugineum HOM05D000060 ORTHO05D000428 7.9e-14 80.9 147 42.9
Thhalv10028937m.g Eutrema salsugineum HOM05D000060 ORTHO05D000428 7.9e-14 80.9 110 50.9
A02p24020 Brassica napus HOM05D000060 ORTHO05D000428 1.0e-13 80.5 131 45.8
BraA02t07396Z Brassica rapa HOM05D000060 ORTHO05D000428 1.0e-13 80.5 131 45.8
Oeu026876.1 Olea europaea HOM05D000060 ORTHO05D000428 3.9e-13 78.6 135 44.4
BcaC03g16033 Brassica carinata HOM05D000060 ORTHO05D000428 6.6e-13 77.8 131 44.3
C02p37860 Brassica napus HOM05D000060 ORTHO05D000428 6.6e-13 77.8 131 44.3
BolC2t09802H Brassica oleracea HOM05D000060 ORTHO05D000428 6.6e-13 77.8 131 44.3
HanXRQChr14g0452811 Helianthus annuus HOM05D000060 ORTHO05D000428 6.6e-13 77.8 129 42.6
BcaB01g02203 Brassica carinata HOM05D000060 ORTHO05D000428 8.7e-13 77.4 119 47.9
BcaC04g24193 Brassica carinata HOM05D000060 ORTHO05D000428 1.9e-12 76.3 113 49.6
BcaC04g24190 Brassica carinata HOM05D000060 ORTHO05D000428 2.5e-12 75.9 129 45.7
BolC9t52955H Brassica oleracea HOM05D000060 ORTHO05D000428 2.5e-12 75.9 129 45.7
HPP92_014967 Vanilla planifolia HOM05D000060 ORTHO05D000428 2.5e-12 75.9 126 46.0
Oeu035607.1 Olea europaea HOM05D000060 ORTHO05D000428 3.3e-12 75.5 137 48.9
Zm00001eb010570 Zea mays HOM05D000060 ORTHO05D000428 3.3e-12 75.5 128 47.7
ECA240G2217 Erigeron canadensis HOM05D000528 ORTHO05D000999 7.4e-12 74.3 116 50.0
Actinidia31414 Actinidia chinensis HOM05D000060 ORTHO05D000428 9.6e-12 73.9 80 57.5
Ca_07823_v3 Cicer arietinum L. HOM05D000060 ORTHO05D000428 9.6e-12 73.9 130 41.5
PSO478G3850 Papaver somniferum HOM05D000060 ORTHO05D000428 1.6e-11 73.2 95 48.4
SGA_v2.0_scaffold95G28898 Striga asiatica HOM05D000060 ORTHO05D000428 2.1e-11 72.8 127 49.6
Migut.N01640 Erythranthe guttata HOM05D000060 ORTHO05D000428 1.8e-10 69.7 109 50.5
HanXRQChr13g0425201 Helianthus annuus HOM05D000060 ORTHO05D000428 3.1e-10 68.9 134 48.5
HanXRQChr04g0122391 Helianthus annuus HOM05D000060 ORTHO05D000428 5.3e-10 68.2 130 49.2
THA.LOC104801990 Tarenaya hassleriana HOM05D000060 ORTHO05D000428 5.3e-10 68.2 135 48.9
THA.LOC104817250 Tarenaya hassleriana HOM05D000060 ORTHO05D000428 5.3e-10 68.2 140 45.0
Psat3g115560 Pisum sativum HOM05D000060 ORTHO05D000428 6.9e-10 67.8 134 40.3
Os10g0162600 Oryza sativa ssp. japonica HOM05D000060 ORTHO05D000428 1.2e-09 67.0 145 37.2
Medtr7g074990 Medicago truncatula HOM05D000060 ORTHO05D000428 1.5e-09 66.6 136 39.0
AL6G53280 Arabidopsis lyrata HOM05D000060 ORTHO05D000428 2.6e-09 65.9 99 49.5
ECA236G2316 Erigeron canadensis HOM05D000060 ORTHO05D000428 2.6e-09 65.9 137 40.1
Aqoxy1G00922 Aquilegia oxysepala HOM05D000060 ORTHO05D000428 5.8e-09 64.7 122 41.8
AT4G00220 Arabidopsis thaliana HOM05D000060 ORTHO05D000428 5.8e-09 64.7 99 48.5
Lj1g0003333 Lotus japonicus HOM05D000060 ORTHO05D000428 7.6e-09 64.3 102 51.0
unitig_0.g1297 Utricularia gibba HOM05D000060 ORTHO05D000428 1.3e-08 63.5 133 40.6
Sc02g0002540 Simmondsia chinensis HOM05D000060 ORTHO05D000428 2.9e-08 62.4 100 47.0
SalBow5G0537 Salvia bowleyana HOM05D000060 ORTHO05D000428 3.8e-08 62.0 117 42.7
ATR0810G007 Amborella trichopoda HOM05D000060 ORTHO05D000428 3.2e-07 58.9 117 46.2
Aa31LG1G26930 Aethionema arabicum HOM05D000060 ORTHO05D000428 9.3e-07 57.4 97 42.3
SalBow5G1683 Salvia bowleyana HOM05D040324 ORTHO05D000428 4.6e-06 55.1 88 43.2
BcaB02g08983 Brassica carinata HOM05D000060 ORTHO05D000428 6.0e-06 54.7 67 49.3
Os03g0246900 Oryza sativa ssp. japonica HOM05D000060 ORTHO05D000428 7.9e-06 54.3 120 40.0


User provided reference genes

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