Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 0.0e+00 1445.6 793 100.0
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 0.0e+00 1166.4 790 81.8
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 7.1e-270 934.1 739 72.8
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 9.7e-227 790.8 791 58.3
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 2.2e-202 709.9 868 51.5
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 9.1e-201 704.5 868 51.4
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.7e-197 693.0 866 50.7
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.6e-187 659.8 847 50.1
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.2e-178 630.2 911 46.1
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 2.2e-146 523.9 838 42.5
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 6.2e-141 505.8 849 40.0
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 9.9e-139 498.4 756 44.2
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 2.3e-135 487.3 898 39.0
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 4.8e-133 479.6 851 39.2
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 8.1e-133 478.8 837 39.7
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 2.5e-129 467.2 841 40.5
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 1.5e-126 458.0 796 40.2
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 2.1e-125 454.1 896 38.7
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 3.1e-124 450.3 693 43.0
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 5.0e-122 443.0 842 39.4
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 1.9e-121 441.0 796 39.9
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 4.6e-120 436.4 843 38.4
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 1.2e-115 421.8 830 37.6
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 7.7e-115 419.1 856 37.5
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.2e-112 411.8 826 38.1
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 2.3e-111 407.5 831 37.7
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 8.8e-111 405.6 820 38.0
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 3.3e-110 403.7 862 36.3
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 3.3e-110 403.7 834 36.8
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 1.3e-109 401.7 799 37.3
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.5e-107 394.8 866 36.7
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 1.7e-106 391.3 804 37.8
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 6.5e-106 389.4 833 37.1
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 7.9e-104 382.5 941 35.1
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.8e-103 381.3 843 36.7
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 5.1e-103 379.8 825 36.8
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 1.3e-98 365.2 821 36.4
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 2.9e-98 364.0 863 35.3
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 4.7e-96 356.7 826 35.2
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.1e-94 352.1 898 33.1
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.1e-94 352.1 898 33.3
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.0e-94 351.3 896 33.3
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 7.5e-94 349.4 807 35.6
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 5.3e-92 343.2 826 35.1
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 1.6e-91 341.7 836 34.6
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 1.6e-91 341.7 779 35.9
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 9.4e-89 332.4 783 35.2
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 4.0e-87 327.0 850 32.9
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 2.4e-84 317.8 800 35.5
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 7.7e-83 312.8 825 33.1
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 8.0e-80 302.8 801 33.1
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 5.2e-79 300.1 641 37.4
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 2.8e-77 294.3 599 36.9
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 4.9e-77 293.5 599 38.4
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 8.3e-77 292.7 923 33.7
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 3.8e-74 283.9 846 31.1
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 8.6e-74 282.7 839 31.7
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 9.5e-73 279.3 802 33.5
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 9.5e-73 279.3 917 32.0
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 1.0e-71 275.8 991 29.1
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 1.8e-71 275.0 844 30.1
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 2.3e-71 274.6 868 31.5
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 1.2e-70 272.3 850 30.8
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 2.6e-70 271.2 783 33.2
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.3e-69 268.9 601 36.6
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 6.4e-69 266.5 841 29.7
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 8.3e-69 266.2 843 30.7
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 1.8e-68 265.0 1000 28.6
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 7.0e-68 263.1 846 31.8
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 5.6e-65 253.4 812 31.3
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 9.5e-65 252.7 835 29.5
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 3.6e-64 250.8 857 31.4
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 1.8e-63 248.4 843 29.1
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 1.3e-61 242.3 854 30.0
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 4.1e-60 237.3 680 31.9
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 5.4e-60 236.9 184 67.4
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 1.7e-58 231.9 858 28.7
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 3.0e-58 231.1 816 30.5
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 3.0e-58 231.1 848 28.9
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 1.9e-57 228.4 847 28.7
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 1.2e-56 225.7 850 28.4
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 2.8e-56 224.6 774 29.3
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 4.0e-55 220.7 856 28.0
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 4.0e-55 220.7 868 28.9
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 9.8e-54 216.1 604 31.1
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.3e-53 215.7 864 27.9
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 2.9e-53 214.5 788 28.9
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 1.1e-52 212.6 842 28.4
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 4.1e-52 210.7 840 29.2
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 5.4e-52 210.3 659 31.0
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 7.1e-52 209.9 169 64.5
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 1.7e-50 205.3 618 30.9
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 3.3e-49 201.1 545 34.3
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 1.6e-48 198.7 483 34.4
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 5.2e-47 193.7 822 27.1
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 3.4e-46 191.0 835 28.6
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 2.2e-45 188.3 807 27.8
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.6e-43 182.2 909 26.5
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 3.9e-42 177.6 557 31.2
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 9.6e-41 172.9 816 27.5
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 3.1e-39 167.9 830 28.2
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.3e-37 162.5 137 56.9
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.1e-36 159.5 141 57.4
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 4.6e-35 154.1 838 27.3
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 3.9e-34 151.0 912 25.8
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 6.2e-32 143.7 107 69.2
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 6.2e-32 143.7 172 48.3
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.7e-29 135.6 177 47.5
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 1.1e-28 132.9 682 28.7
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 4.2e-28 131.0 620 28.9
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.6e-27 129.0 99 67.7
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 1.7e-26 125.6 162 45.1
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 3.3e-25 121.3 897 23.7
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 8.1e-24 116.7 339 31.3
FAN18G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 9.0e-23 113.2 128 53.9
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 3.3e-17 94.7 157 35.0
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 5.6e-17 94.0 153 41.8
FvH4_4g08230 Fragaria vesca HOM05D005434 ORTHO05D006412 2.4e-15 88.6 94 56.4
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 4.2e-12 77.8 129 40.3
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 7.9e-11 73.6 158 31.0
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 3.9e-10 71.2 142 31.7
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 8.7e-10 70.1 129 38.0
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.5e-09 69.3 601 24.6
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 2.5e-09 68.6 139 30.9
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 3.3e-09 68.2 118 34.7
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 5.7e-09 67.4 74 41.9
Dinv33188 Davidia involucrata HOM05D005434 ORTHO05D006412 2.1e-08 65.5 122 39.3
Pp3c2_29340 Physcomitrium patens HOM05D022252 ORTHO05D006412 3.1e-07 61.6 198 21.2


User provided reference genes

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