Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1284800 Malus domestica HOM05D006141 ORTHO05D007670 3.2e-108 395.2 212 100.0
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 1.7e-85 319.7 210 81.9
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 3.9e-74 282.0 209 75.1
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.5e-73 280.0 209 74.6
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 3.3e-73 278.9 209 74.6
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 7.4e-73 277.7 208 74.5
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 7.4e-73 277.7 209 74.2
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 5.3e-71 271.6 209 71.3
FAN26G1012 Fragaria x ananassa HOM05D006141 ORTHO05D007670 4.5e-70 268.5 230 67.8
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 1.0e-69 267.3 211 71.1
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 6.5e-69 264.6 209 69.9
QL12p034897 Quercus lobata HOM05D006141 ORTHO05D007670 6.5e-69 264.6 211 71.6
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 1.1e-68 263.8 209 67.9
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 5.5e-68 261.5 214 69.2
CiPaw.08G082900 Carya illinoinensis HOM05D006141 ORTHO05D007670 9.3e-68 260.8 211 70.1
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 6.0e-67 258.1 209 66.5
CANSAT25G1526 Cannabis sativa HOM05D006141 ORTHO05D007670 3.0e-66 255.8 210 67.1
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 5.1e-66 255.0 221 67.9
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 1.9e-65 253.1 204 69.6
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 3.3e-65 252.3 209 68.4
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 3.3e-65 252.3 203 67.5
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 5.7e-65 251.5 211 65.9
Sabra14G0083000 Salix brachista HOM05D006141 ORTHO05D007670 7.4e-65 251.1 209 68.9
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 1.6e-64 250.0 201 67.7
Phvul.001G218100 Phaseolus vulgaris HOM05D006141 ORTHO05D007670 2.8e-64 249.2 203 66.0
Ca_09244_v3 Cicer arietinum L. HOM05D006141 ORTHO05D007670 4.8e-64 248.4 205 66.8
Lalb_Chr18g0046401 Lupinus albus HOM05D006141 ORTHO05D007670 9.0e-63 244.2 209 65.6
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 7.6e-62 241.1 210 63.8
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 1.3e-61 240.4 210 64.3
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 2.2e-61 239.6 210 63.8
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 2.9e-61 239.2 211 65.4
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 1.9e-60 236.5 209 64.6
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 1.9e-60 236.5 208 63.0
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 2.5e-60 236.1 209 64.1
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 9.3e-60 234.2 215 65.1
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 1.6e-59 233.4 209 63.6
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 1.8e-58 229.9 213 63.8
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 2.3e-58 229.6 194 66.5
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 3.9e-58 228.8 215 64.2
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 1.1e-57 227.3 214 63.1
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 1.1e-57 227.3 213 62.9
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 1.1e-57 227.3 228 58.8
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 2.5e-57 226.1 228 59.6
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 2.5e-57 226.1 210 60.5
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 7.4e-57 224.6 214 64.5
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 9.7e-57 224.2 228 57.9
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 6.3e-56 221.5 218 59.2
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 8.2e-56 221.1 228 57.0
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 1.1e-55 220.7 216 61.6
MBI18_g10378_MAGBIO Magnolia biondii HOM05D006141 ORTHO05D007670 4.1e-55 218.8 213 63.4
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 5.3e-55 218.4 227 57.3
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 9.0e-55 217.6 211 58.8
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 2.6e-54 216.1 211 58.8
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 1.3e-53 213.8 214 59.8
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 2.2e-53 213.0 213 59.2
SGA_v2.0_scaffold417G51257 Striga asiatica HOM05D006141 ORTHO05D007670 2.2e-53 213.0 217 58.1
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 1.4e-52 210.3 216 58.3
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 2.5e-52 209.5 211 57.8
ECA236G4451 Erigeron canadensis HOM05D006141 ORTHO05D007670 3.2e-52 209.1 210 58.1
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 5.5e-52 208.4 229 58.1
AT3G62140 Arabidopsis thaliana HOM05D006141 ORTHO05D007670 2.7e-51 206.1 212 57.1
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 2.7e-51 206.1 225 56.9
PSO210G0852 Papaver somniferum HOM05D006141 ORTHO05D007670 3.6e-51 205.7 216 58.8
AL5G44810 Arabidopsis lyrata HOM05D006141 ORTHO05D007670 6.1e-51 204.9 212 58.0
EL10Ac6g14128 Beta vulgaris HOM05D006141 ORTHO05D007670 1.0e-50 204.1 217 59.0
PSO761G0605 Papaver somniferum HOM05D006141 ORTHO05D007670 1.0e-50 204.1 216 58.3
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 1.8e-50 203.4 211 59.7
HanXRQChr06g0167971 Helianthus annuus HOM05D006141 ORTHO05D007670 3.9e-50 202.2 215 57.7
Ah.11g045950 Amaranthus hybridus HOM05D006141 ORTHO05D007670 5.1e-50 201.8 222 57.2
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 6.7e-50 201.4 211 58.8
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 7.4e-49 198.0 212 55.2
Carub.0005s2889 Capsella rubella HOM05D006141 ORTHO05D007670 1.7e-48 196.8 218 56.9
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 1.7e-48 196.8 210 58.6
Thhalv10006233m.g Eutrema salsugineum HOM05D006141 ORTHO05D007670 4.8e-48 195.3 217 57.1
Peaxi162Scf00309g01021 Petunia axillaris HOM05D006141 ORTHO05D007670 1.1e-47 194.1 227 53.7
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 4.1e-47 192.2 203 56.2
CARHR172480 Cardamine hirsuta HOM05D006141 ORTHO05D007670 5.3e-47 191.8 208 55.3
Rhsim01G0085900 Rhododendron simsii HOM05D006141 ORTHO05D007670 9.1e-47 191.0 215 53.5
Aa31LG10G16170 Aethionema arabicum HOM05D006141 ORTHO05D007670 4.5e-46 188.7 215 55.8
Sp5g01230 Schrenkiella parvula HOM05D006141 ORTHO05D007670 4.5e-46 188.7 214 53.7
HPP92_018284 Vanilla planifolia HOM05D006141 ORTHO05D007670 6.5e-45 184.9 213 53.1
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 8.5e-45 184.5 201 53.7
BcaC07g40706 Brassica carinata HOM05D006141 ORTHO05D007670 1.4e-44 183.7 216 55.1
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 4.2e-44 182.2 215 51.2
BcaB02g07358 Brassica carinata HOM05D002572 ORTHO05D002800 7.2e-44 181.4 195 55.9
Lsat_1_v5_gn_8_167241 Lactuca sativa HOM05D006141 ORTHO05D007670 2.7e-43 179.5 201 54.7
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 6.1e-43 178.3 124 78.2
C06p28110 Brassica napus HOM05D006141 ORTHO05D007670 1.0e-42 177.6 207 53.1
BolC6t37977H Brassica oleracea HOM05D006141 ORTHO05D007670 1.0e-42 177.6 207 53.1
C08p37090 Brassica napus HOM05D006141 ORTHO05D007670 1.4e-42 177.2 216 53.2
BolC8t51287H Brassica oleracea HOM05D006141 ORTHO05D007670 1.4e-42 177.2 216 53.2
Rhsim01G0080900 Rhododendron simsii HOM05D006141 ORTHO05D007670 3.9e-42 175.6 181 58.6
A09p54230 Brassica napus HOM05D006141 ORTHO05D007670 1.1e-41 174.1 214 51.9
BraA09t40835Z Brassica rapa HOM05D006141 ORTHO05D007670 1.1e-41 174.1 214 51.9
SEGI_07518 Sequoiadendron giganteum HOM05D006141 ORTHO05D007670 4.4e-41 172.2 207 52.2
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 3.7e-40 169.1 118 76.3
A07p25870 Brassica napus HOM05D006141 ORTHO05D007670 6.3e-40 168.3 207 51.7
Lj1g0014608 Lotus japonicus HOM05D006141 ORTHO05D007670 2.6e-38 162.9 211 48.8
CAN.G100.55 Capsicum annuum HOM05D006141 ORTHO05D007670 1.0e-37 161.0 117 72.6
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 2.9e-37 159.5 113 73.5
BcaC08g45187 Brassica carinata HOM05D006141 ORTHO05D007670 1.9e-36 156.8 117 70.9
Rhsim01G0086800 Rhododendron simsii HOM05D006141 ORTHO05D007670 2.7e-35 152.9 215 48.8
Lj2A1216T56 Lonicera japonica HOM05D006141 ORTHO05D007670 1.6e-30 137.1 83 84.3
BcaB02g07360 Brassica carinata HOM05D006141 ORTHO05D007670 1.7e-29 133.7 92 75.0
BraA07t30234Z Brassica rapa HOM05D006141 ORTHO05D007670 1.5e-28 130.6 82 79.3
Ciclev10030010m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.5e-28 129.8 203 44.8
Ciclev10030079m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.3e-26 123.2 146 50.7
Ciclev10030249m.g Citrus clementina HOM05D006141 ORTHO05D007670 4.0e-26 122.5 143 52.4
Haze_05144 Corylus avellana HOM05D006141 ORTHO05D007670 1.5e-25 120.6 211 42.2
Pp3c2_35190 Physcomitrium patens HOM05D006141 ORTHO05D007670 1.4e-23 114.0 208 41.3
Mapoly0026s0067 Marchantia polymorpha HOM05D006141 ORTHO05D007670 1.6e-22 110.5 149 45.6
Rhsim12G0140700 Rhododendron simsii HOM05D006141 ORTHO05D007670 6.5e-21 105.1 153 51.0
Rhsim01G0082900 Rhododendron simsii HOM05D006141 ORTHO05D007670 4.4e-17 92.4 166 41.0
SHI33165 Sapria himalayana HOM05D006141 ORTHO05D007670 9.8e-17 91.3 134 44.8
CBR_g57079 Chara braunii HOM05D006141 ORTHO05D007670 1.1e-12 77.8 167 36.5
AagrBONN_evm.TU.Sc2ySwM_368.766 Anthoceros agrestis HOM05D006141 ORTHO05D007670 1.9e-12 77.0 146 41.1
FAN03G1225 Fragaria x ananassa HOM05D006141 ORTHO05D007670 9.5e-12 74.7 44 79.5
Rhsim01G0081900 Rhododendron simsii HOM05D006141 ORTHO05D007670 9.5e-12 74.7 53 71.7
BcaC09g48717 Brassica carinata HOM05D001214 ORTHO05D001029 1.2e-11 74.3 45 80.0
Nitab4.5_0008976g0040 Nicotiana tabacum HOM05D006141 ORTHO05D007670 3.6e-11 72.8 126 42.1
Atru.chr5.867 Acer truncatum HOM05D006141 ORTHO05D007670 1.0e-10 71.2 88 51.1
DCAR_012300 Daucus carota HOM05D006141 ORTHO05D007670 1.5e-09 67.4 46 69.6
Rhsim01G0083000 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.6e-06 57.4 112 42.9


User provided reference genes

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