Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 4.1e-95 351.3 167 100.0
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 7.8e-86 320.5 160 95.0
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.7e-72 276.2 160 86.2
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.5e-65 251.5 166 78.3
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 2.9e-64 248.8 161 80.7
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.9e-64 248.8 161 80.1
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 3.8e-64 248.4 160 78.8
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.1e-63 246.9 161 79.5
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.7e-62 242.3 162 80.2
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 4.2e-55 218.4 169 68.0
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.1e-52 210.3 140 74.3
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.6e-51 206.5 166 64.5
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 1.4e-50 203.4 136 71.3
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 2.4e-50 202.6 163 63.2
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 4.0e-50 201.8 131 74.0
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 5.3e-50 201.4 165 63.6
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 9.0e-50 200.7 131 73.3
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.5e-49 199.9 173 64.7
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 4.5e-49 198.4 162 61.7
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.5e-49 198.4 130 73.8
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 4.5e-49 198.4 122 73.0
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 1.0e-48 197.2 176 60.8
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.3e-48 196.8 135 73.3
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.7e-48 196.4 161 64.0
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 2.9e-48 195.7 141 68.1
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.1e-47 193.7 125 76.0
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.4e-47 193.4 110 85.5
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 5.5e-47 191.4 172 58.7
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 5.5e-47 191.4 142 69.7
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 9.3e-47 190.7 165 61.2
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.2e-46 190.3 180 60.6
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.2e-46 190.3 116 78.4
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.2e-46 190.3 109 78.0
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.6e-46 189.9 173 61.8
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.7e-46 189.1 129 69.0
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 2.7e-46 189.1 129 73.6
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 3.5e-46 188.7 109 80.7
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 3.5e-46 188.7 115 73.9
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 3.5e-46 188.7 100 83.0
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 3.5e-46 188.7 170 60.0
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 4.6e-46 188.3 111 78.4
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 4.6e-46 188.3 163 62.0
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 7.9e-46 187.6 109 80.7
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 7.9e-46 187.6 170 60.0
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.3e-45 186.8 157 61.8
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.3e-45 186.8 110 77.3
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.3e-45 186.8 115 73.0
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 1.8e-45 186.4 126 69.8
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.8e-45 186.4 98 84.7
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.8e-45 186.4 98 84.7
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.3e-45 186.0 157 61.8
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 3.0e-45 185.7 103 84.5
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.9e-45 185.3 157 61.1
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 5.1e-45 184.9 161 62.7
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 5.1e-45 184.9 115 75.7
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 6.7e-45 184.5 104 79.8
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.5e-44 183.3 172 58.7
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 1.5e-44 183.3 137 66.4
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.9e-44 183.0 117 76.1
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 2.5e-44 182.6 135 67.4
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 2.5e-44 182.6 175 59.4
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 3.3e-44 182.2 124 72.6
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 7.4e-44 181.0 139 66.2
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 9.7e-44 180.6 106 76.4
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 1.3e-43 180.3 136 63.2
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 1.6e-43 179.9 103 77.7
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 2.2e-43 179.5 168 55.4
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 2.2e-43 179.5 137 67.2
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 4.8e-43 178.3 92 87.0
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 8.2e-43 177.6 137 64.2
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 1.4e-42 176.8 93 84.9
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.8e-42 176.4 136 61.8
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.8e-42 176.4 142 64.8
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.1e-42 175.6 93 83.9
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 3.1e-42 175.6 119 68.9
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 4.1e-42 175.3 131 64.9
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.3e-42 174.9 90 84.4
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 1.5e-41 173.3 126 66.7
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 2.0e-41 172.9 129 61.2
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 2.6e-41 172.6 96 80.2
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.4e-41 172.2 136 61.0
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.4e-41 172.2 93 81.7
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.4e-41 172.2 131 61.8
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-40 169.9 112 67.9
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.7e-40 169.9 146 61.0
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.9e-40 169.1 149 56.4
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.8e-40 168.7 98 73.5
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.8e-40 168.7 128 60.9
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 5.0e-40 168.3 136 60.3
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 5.0e-40 168.3 97 73.2
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.1e-39 167.2 143 56.6
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.4e-39 166.8 116 67.2
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.9e-39 166.4 162 51.9
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.9e-39 166.4 113 64.6
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 5.5e-39 164.9 86 84.9
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 5.5e-39 164.9 136 58.8
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 5.5e-39 164.9 100 71.0
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 1.6e-38 163.3 89 83.1
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.8e-37 159.8 136 56.6
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.8e-37 159.8 110 65.5
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.8e-37 159.8 146 57.5
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 8.8e-37 157.5 106 64.2
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.1e-36 157.1 142 56.3
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 1.5e-36 156.8 117 63.2
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.9e-36 156.4 97 69.1
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.9e-36 156.4 97 69.1
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 9.7e-36 154.1 125 57.6
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 3.7e-35 152.1 112 68.8
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 4.8e-35 151.8 87 75.9
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 6.3e-35 151.4 165 49.1
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 1.4e-34 150.2 144 58.3
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.4e-34 150.2 82 79.3
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.8e-34 149.8 104 63.5
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 4.1e-34 148.7 114 61.4
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 2.0e-33 146.4 113 65.5
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 5.9e-33 144.8 105 66.7
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-32 144.1 167 47.3
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 1.0e-32 144.1 161 51.6
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 3.8e-32 142.1 128 55.5
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 5.0e-32 141.7 173 45.7
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 5.0e-32 141.7 97 58.8
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 5.5e-31 138.3 102 66.7
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 5.5e-31 138.3 102 66.7
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 2.3e-29 132.9 109 52.3
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 3.9e-29 132.1 64 92.2
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 6.7e-29 131.3 134 53.7
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 8.8e-29 131.0 97 57.7
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.5e-28 130.2 173 43.4
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.6e-28 129.4 97 57.7
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.4e-28 128.6 96 55.2
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.3e-27 127.1 89 62.9
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.8e-27 125.9 96 53.1
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 3.7e-27 125.6 88 59.1
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 4.8e-27 125.2 68 80.9
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 6.3e-27 124.8 65 87.7
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.4e-26 123.6 97 52.6
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-26 123.2 96 51.0
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 1.8e-26 123.2 96 51.0
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 3.1e-26 122.5 96 51.0
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 3.1e-26 122.5 96 51.0
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 3.1e-26 122.5 96 51.0
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 4.1e-26 122.1 96 51.0
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 4.1e-26 122.1 96 51.0
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 4.1e-26 122.1 96 51.0
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 5.3e-26 121.7 94 53.2
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 6.9e-26 121.3 63 81.0
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 9.1e-26 120.9 108 50.9
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.2e-25 120.6 82 59.8
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 7.7e-25 117.9 88 53.4
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 2.2e-24 116.3 86 55.8
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 2.1e-22 109.8 133 40.6
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.1e-22 109.8 88 48.9
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 3.0e-21 105.9 73 68.5
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.5e-20 103.6 149 45.0
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 3.7e-19 99.0 52 76.9
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 4.1e-18 95.5 85 47.1
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 5.9e-17 91.7 136 41.9
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 5.5e-15 85.1 63 65.1
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 9.4e-15 84.3 85 52.9
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 1.2e-14 84.0 88 37.5
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.4e-13 80.5 107 35.5
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 2.3e-13 79.7 64 53.1
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 4.4e-12 75.5 59 62.7
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 1.6e-09 67.0 113 37.2
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 2.0e-09 66.6 111 36.0
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-09 66.2 111 36.9
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 5.9e-09 65.1 41 61.0


User provided reference genes

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