Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 1.8e-78 295.8 148 100.0
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 2.1e-74 282.3 148 94.6
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 8.8e-65 250.4 148 81.1
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 3.1e-62 241.9 147 79.6
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.1e-62 241.9 147 79.6
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 5.9e-61 237.7 147 78.2
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 1.0e-60 236.9 147 78.9
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.8e-60 235.0 147 76.9
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 8.5e-60 233.8 142 76.8
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.1e-59 233.4 147 77.6
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 8.0e-58 227.3 140 75.7
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 4.0e-57 224.9 145 72.4
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 4.0e-57 224.9 142 73.2
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 5.2e-57 224.6 142 73.2
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 8.8e-57 223.8 139 76.3
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 2.0e-56 222.6 142 73.9
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 2.6e-56 222.2 143 74.8
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 2.6e-56 222.2 142 74.6
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 9.7e-56 220.3 142 72.5
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 1.3e-55 219.9 144 73.6
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 1.7e-55 219.5 144 71.5
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.7e-55 219.5 142 70.4
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 2.8e-55 218.8 139 73.4
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 2.8e-55 218.8 139 73.4
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 2.8e-55 218.8 139 73.4
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 2.8e-55 218.8 142 73.2
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 3.7e-55 218.4 145 72.4
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 3.7e-55 218.4 115 92.2
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 4.8e-55 218.0 139 73.4
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 4.8e-55 218.0 146 72.6
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 4.8e-55 218.0 146 72.6
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 6.3e-55 217.6 144 70.1
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.1e-54 216.9 143 71.3
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.1e-54 216.9 139 72.7
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.4e-54 216.5 139 72.7
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.4e-54 216.5 139 72.7
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 1.8e-54 216.1 139 71.9
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 2.4e-54 215.7 141 73.0
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 5.3e-54 214.5 139 71.2
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 5.3e-54 214.5 139 71.9
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 9.1e-54 213.8 142 71.8
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 1.2e-53 213.4 139 71.2
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.6e-53 213.0 143 67.8
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.6e-53 213.0 132 76.5
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 2.0e-53 212.6 144 70.8
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 2.7e-53 212.2 140 72.1
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 3.5e-53 211.8 141 70.9
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 3.5e-53 211.8 139 70.5
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 4.5e-53 211.5 141 70.2
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 5.9e-53 211.1 139 70.5
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 7.7e-53 210.7 142 68.3
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 2.9e-52 208.8 139 66.9
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 2.9e-52 208.8 142 68.3
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 3.8e-52 208.4 155 65.8
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 3.8e-52 208.4 139 69.8
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 5.0e-52 208.0 142 71.1
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 8.5e-52 207.2 142 67.6
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.9e-51 206.1 168 61.3
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.5e-51 205.7 143 67.8
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.2e-51 205.3 140 70.7
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 3.2e-51 205.3 140 70.7
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 4.2e-51 204.9 158 63.9
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 4.2e-51 204.9 143 67.1
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 7.2e-51 204.1 145 66.9
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 7.2e-51 204.1 138 68.8
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 7.2e-51 204.1 143 66.4
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 1.2e-50 203.4 143 67.8
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.6e-50 203.0 146 66.4
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 1.6e-50 203.0 141 65.2
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.1e-50 202.6 138 68.1
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 2.1e-50 202.6 138 68.1
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 2.1e-50 202.6 143 65.7
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 2.7e-50 202.2 140 72.1
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 3.6e-50 201.8 144 66.0
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 4.7e-50 201.4 146 68.5
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 6.1e-50 201.1 144 66.7
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 6.1e-50 201.1 140 71.4
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 6.1e-50 201.1 143 65.0
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 8.0e-50 200.7 139 69.8
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 8.0e-50 200.7 134 67.9
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 1.0e-49 200.3 143 65.7
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.0e-49 200.3 144 65.3
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.0e-49 200.3 142 64.8
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.3e-49 199.1 144 63.9
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 6.8e-49 197.6 142 64.8
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 6.8e-49 197.6 141 67.4
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 6.8e-49 197.6 142 71.1
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 6.8e-49 197.6 143 63.6
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.2e-48 196.8 144 66.7
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.2e-48 196.8 143 63.6
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.2e-48 196.8 143 67.1
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.0e-48 196.1 144 65.3
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.0e-48 196.1 144 63.2
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 2.6e-48 195.7 144 66.0
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.4e-48 195.3 142 66.9
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 4.4e-48 194.9 143 65.0
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 5.7e-48 194.5 144 65.3
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 7.5e-48 194.1 142 66.9
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 7.5e-48 194.1 120 73.3
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 2.2e-47 192.6 136 66.2
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 3.7e-47 191.8 142 64.8
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 8.3e-47 190.7 144 63.2
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 2.4e-46 189.1 146 63.0
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.1e-46 188.7 145 61.4
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 4.1e-46 188.3 143 62.9
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 5.4e-46 188.0 142 61.3
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.6e-45 186.4 140 64.3
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.7e-45 185.7 143 60.1
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 3.5e-45 185.3 120 70.8
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 7.7e-45 184.1 120 70.8
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.3e-44 183.3 203 49.8
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.3e-44 183.3 130 66.2
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 3.3e-43 178.7 139 61.9
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 4.2e-43 178.3 118 72.9
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 5.5e-43 177.9 120 69.2
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 5.5e-43 177.9 144 57.6
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 7.2e-43 177.6 144 58.3
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 9.5e-43 177.2 145 55.2
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 9.5e-43 177.2 137 61.3
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 1.6e-42 176.4 120 68.3
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 1.6e-42 176.4 141 61.7
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 2.8e-42 175.6 140 55.7
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 3.6e-42 175.3 144 56.9
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 8.0e-42 174.1 144 58.3
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.2e-40 170.2 142 60.6
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.0e-40 169.5 102 77.5
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 5.7e-40 167.9 122 68.0
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.3e-39 166.8 143 53.8
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 1.7e-39 166.4 118 65.3
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.7e-39 166.4 116 65.5
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.4e-38 163.3 145 54.5
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 4.1e-38 161.8 146 56.8
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 5.4e-38 161.4 134 56.7
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 9.2e-38 160.6 111 67.6
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.1e-30 137.1 135 54.1
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.4e-30 136.0 125 54.4
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.4e-30 136.0 125 54.4
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 3.9e-28 128.6 84 70.2
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 2.8e-26 122.5 138 47.1
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 2.0e-24 116.3 138 43.5
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 2.6e-24 115.9 99 54.5
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 3.4e-24 115.5 99 53.5
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.4e-24 115.2 131 48.9
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.7e-23 113.2 141 44.0
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 5.4e-22 108.2 139 45.3
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 3.5e-21 105.5 92 54.3
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 6.0e-21 104.8 135 43.0
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 6.0e-21 104.8 135 40.7
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 4.3e-19 98.6 131 42.0
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 8.9e-17 90.9 141 37.6
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 8.3e-15 84.3 135 37.0
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 1.4e-14 83.6 59 61.0
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 1.4e-14 83.6 61 59.0
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.4e-14 83.6 112 41.1
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 2.1e-13 79.7 51 74.5
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 2.1e-13 79.7 51 74.5
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 2.1e-13 79.7 51 74.5
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 4.6e-13 78.6 99 44.4
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 6.0e-13 78.2 51 72.5
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.0e-12 77.4 55 60.0
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.7e-12 76.6 88 46.6
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.7e-12 76.6 107 37.4
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 1.2e-08 63.9 49 61.2
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 2.6e-08 62.8 96 40.6
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 6.4e-07 58.2 66 45.5


User provided reference genes

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