Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 4.0e-241 837.8 462 100.0
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 1.6e-218 762.7 462 91.3
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 3.9e-196 688.3 462 85.3
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 7.0e-177 624.4 462 77.1
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 6.5e-175 617.8 462 77.1
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 8.5e-175 617.5 462 76.8
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 8.5e-175 617.5 462 76.6
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 8.0e-173 610.9 462 76.4
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 2.5e-158 562.8 462 71.9
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 1.2e-155 553.9 462 72.7
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 9.8e-155 550.8 460 69.6
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 1.7e-151 540.0 462 71.0
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 1.1e-150 537.3 462 70.8
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 1.9e-150 536.6 449 71.7
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 1.6e-149 533.5 462 70.8
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 6.8e-148 528.1 456 68.9
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 1.5e-147 526.9 468 67.3
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 2.0e-147 526.6 462 70.6
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 3.4e-147 525.8 460 69.1
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 7.5e-147 524.6 471 68.2
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 2.5e-142 509.6 456 67.5
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 6.8e-140 501.5 463 68.0
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 1.5e-139 500.4 462 67.3
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 9.9e-139 497.7 450 68.4
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.2e-138 496.5 462 67.5
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 9.2e-137 491.1 461 66.4
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 1.0e-135 487.6 466 64.6
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 2.5e-134 483.0 461 65.9
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 3.1e-132 476.1 445 67.4
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 4.0e-132 475.7 464 64.9
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 6.9e-132 474.9 454 65.4
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 2.6e-131 473.0 445 67.0
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 2.2e-130 469.9 445 66.5
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 2.4e-129 466.5 454 64.5
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 7.1e-129 464.9 456 62.1
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 9.3e-129 464.5 404 69.3
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 3.5e-128 462.6 433 64.4
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 4.6e-128 462.2 454 64.3
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.0e-128 461.8 385 71.4
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 3.3e-126 456.1 463 61.8
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 5.6e-126 455.3 348 77.9
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 5.6e-126 455.3 496 57.5
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 9.6e-126 454.5 461 61.8
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 1.4e-124 450.7 464 62.3
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 2.4e-124 449.9 438 64.4
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 4.0e-124 449.1 454 63.2
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 4.0e-124 449.1 455 61.8
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 4.5e-123 445.7 460 61.7
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 8.4e-122 441.4 436 63.1
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 1.9e-121 440.3 451 61.0
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 4.6e-120 435.6 461 62.5
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 1.8e-119 433.7 450 62.4
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 3.9e-119 432.6 401 67.6
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.5e-118 430.6 434 63.4
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 2.5e-118 429.9 410 65.4
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 3.3e-118 429.5 437 61.3
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 7.4e-118 428.3 461 59.2
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 7.4e-118 428.3 386 70.2
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 2.1e-117 426.8 460 60.4
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 8.1e-117 424.9 449 62.8
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-116 424.5 394 69.3
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 1.4e-116 424.1 443 62.8
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 1.8e-116 423.7 461 58.8
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.2e-115 421.0 443 56.9
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 2.0e-115 420.2 444 62.2
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 2.6e-115 419.9 382 70.2
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 4.5e-115 419.1 458 61.8
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 4.5e-115 419.1 439 62.9
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 7.6e-115 418.3 348 70.7
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 2.9e-114 416.4 398 65.1
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 2.9e-114 416.4 380 69.2
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 2.9e-114 416.4 439 62.4
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 4.9e-114 415.6 439 61.7
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 3.2e-113 412.9 371 71.4
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 5.5e-113 412.1 382 68.6
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 6.0e-112 408.7 372 71.5
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.3e-111 407.5 373 70.8
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 2.3e-111 406.8 385 68.1
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 5.1e-111 405.6 412 63.1
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 2.5e-110 403.3 326 74.8
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 3.3e-110 402.9 374 70.6
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 3.3e-110 402.9 374 70.6
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 5.3e-108 395.6 384 68.0
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 6.9e-108 395.2 384 68.0
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 6.9e-108 395.2 384 68.0
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.5e-107 394.0 380 65.3
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 1.0e-106 391.3 374 65.2
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 6.5e-106 388.7 300 69.3
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 1.6e-104 384.0 359 68.8
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 1.0e-103 381.3 359 69.1
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.0e-103 381.3 364 66.2
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 1.3e-103 380.9 384 64.3
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 2.3e-103 380.2 404 60.4
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 3.3e-102 376.3 381 63.5
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 4.3e-102 375.9 423 58.9
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 2.1e-101 373.6 260 77.7
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 4.5e-99 365.9 332 66.9
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 8.5e-98 361.7 328 69.8
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 3.9e-95 352.8 451 55.0
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 5.7e-94 349.0 436 56.4
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 4.5e-91 339.3 228 82.9
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 9.4e-89 331.6 423 54.4
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 8.8e-87 325.1 306 69.9
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 1.1e-86 324.7 248 70.2
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.8e-74 283.1 203 75.4
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 6.5e-74 282.3 449 42.8
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 4.8e-69 266.2 276 66.3
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.9e-65 254.2 349 53.3
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 5.4e-60 236.1 327 51.7
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 1.5e-57 228.0 438 40.6
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.4e-55 221.5 358 48.0
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.3e-53 214.9 354 44.9
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 6.3e-53 212.6 239 63.6
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 3.1e-52 210.3 317 47.6
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 3.5e-51 206.8 131 81.7
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.9e-50 203.8 228 51.3
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 3.6e-40 170.2 122 71.3
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 7.5e-38 162.5 278 38.8
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 1.7e-34 151.4 210 41.9
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 7.5e-30 136.0 77 92.2
FAN28G0752 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.3e-29 135.2 112 62.5
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 5.6e-25 119.8 158 55.1
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 8.7e-18 95.9 60 78.3
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 4.6e-11 73.6 163 36.2
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 1.4e-07 62.0 173 33.5
unitig_736.g22595 Utricularia gibba HOM05D006243 ORTHO05D007688 2.6e-06 57.8 113 35.4


User provided reference genes

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