Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1216900 Malus domestica HOM05D003361 ORTHO05D003760 3.8e-41 171.0 82 100.0
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 1.5e-18 95.9 58 77.6
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 1.0e-17 93.2 58 75.9
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.3e-17 92.8 58 75.9
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.3e-17 92.8 58 75.9
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 3.8e-17 91.3 58 74.1
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 3.8e-17 91.3 58 74.1
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 8.4e-17 90.1 58 72.4
RcHm_v2.0_Chr1g0325881 Rosa chinensis HOM05D003361 ORTHO05D003760 9.3e-16 86.7 58 72.4
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 3.5e-15 84.7 58 70.7
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 5.1e-14 80.9 82 51.2
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 8.7e-14 80.1 58 63.8
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 1.1e-13 79.7 58 65.5
RcHm_v2.0_Chr6g0252571 Rosa chinensis HOM05D003361 ORTHO05D003760 1.5e-13 79.3 58 69.0
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 5.7e-13 77.4 58 60.3
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 5.7e-13 77.4 58 60.3
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 7.4e-13 77.0 58 65.5
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 9.6e-13 76.6 58 63.8
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 9.6e-13 76.6 58 63.8
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 9.6e-13 76.6 58 63.8
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 2.1e-12 75.5 58 63.8
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 2.1e-12 75.5 59 64.4
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 2.1e-12 75.5 58 62.1
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 2.8e-12 75.1 58 62.1
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 3.7e-12 74.7 58 60.3
Haze_16605 Corylus avellana HOM05D003361 ORTHO05D003760 3.7e-12 74.7 58 62.1
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 4.8e-12 74.3 58 65.5
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 6.2e-12 73.9 58 62.1
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 8.2e-12 73.6 58 62.1
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 1.4e-11 72.8 58 63.8
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 1.8e-11 72.4 58 62.1
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 3.1e-11 71.6 58 60.3
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 3.1e-11 71.6 58 62.1
TAR383G0111 Trochodendron aralioides HOM05D003361 ORTHO05D003760 3.1e-11 71.6 58 62.1
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 4.0e-11 71.2 58 60.3
SalBow7G3482 Salvia bowleyana HOM05D003361 ORTHO05D003760 4.0e-11 71.2 58 60.3
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 5.3e-11 70.9 58 62.1
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 1.2e-10 69.7 58 60.3
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 2.0e-10 68.9 58 60.3
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 2.0e-10 68.9 58 60.3
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 2.0e-10 68.9 58 60.3
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 2.6e-10 68.6 58 58.6
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 2.6e-10 68.6 58 58.6
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 2.6e-10 68.6 58 58.6
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 5.8e-10 67.4 58 58.6
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 5.8e-10 67.4 58 60.3
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 5.8e-10 67.4 58 60.3
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 5.8e-10 67.4 58 56.9
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 7.6e-10 67.0 58 58.6
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 7.6e-10 67.0 58 56.9
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 7.6e-10 67.0 58 60.3
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 7.6e-10 67.0 58 58.6
Dinv36449 Davidia involucrata HOM05D003361 ORTHO05D003760 1.0e-09 66.6 58 53.4
Dinv41445 Davidia involucrata HOM05D003361 ORTHO05D003760 1.0e-09 66.6 58 55.2
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 1.0e-09 66.6 58 60.3
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 1.0e-09 66.6 58 58.6
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 1.0e-09 66.6 58 62.1
Dinv30637 Davidia involucrata HOM05D003361 ORTHO05D003760 2.2e-09 65.5 58 58.6
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 2.2e-09 65.5 58 58.6
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 2.9e-09 65.1 58 56.9
Psat7g257800 Pisum sativum HOM05D003361 ORTHO05D003760 2.9e-09 65.1 58 53.4
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 2.9e-09 65.1 58 58.6
Actinidia15974 Actinidia chinensis HOM05D003361 ORTHO05D003760 3.8e-09 64.7 58 56.9
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 8.4e-09 63.5 48 66.7
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 1.1e-08 63.2 62 58.1
Hma1.2p1_0461F.1_g157700 Hydrangea macrophylla HOM05D003361 ORTHO05D003760 1.1e-08 63.2 58 55.2
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 1.1e-08 63.2 58 60.3
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.1e-08 63.2 58 56.9
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.1e-08 63.2 58 58.6
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 1.4e-08 62.8 58 55.2
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 1.4e-08 62.8 58 56.9
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.4e-08 62.8 58 60.3
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 1.9e-08 62.4 58 56.9
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 1.9e-08 62.4 58 56.9
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 3.2e-08 61.6 59 57.6
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 4.2e-08 61.2 58 56.9
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 4.2e-08 61.2 58 56.9
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 4.2e-08 61.2 60 58.3
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 4.2e-08 61.2 58 56.9
Sopen03g036300 Solanum pennellii HOM05D003361 ORTHO05D003760 4.2e-08 61.2 58 56.9
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 4.2e-08 61.2 58 56.9
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 5.5e-08 60.8 58 55.2
Medtr4g009873 Medicago truncatula HOM05D003361 ORTHO05D003760 5.5e-08 60.8 58 51.7
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 7.1e-08 60.5 58 56.9
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 7.1e-08 60.5 58 53.4
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 7.1e-08 60.5 58 55.2
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 9.3e-08 60.1 59 54.2
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 9.3e-08 60.1 58 55.2
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 9.3e-08 60.1 58 53.4
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 1.2e-07 59.7 58 55.2
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 1.6e-07 59.3 58 55.2
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 2.1e-07 58.9 59 52.5
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 2.1e-07 58.9 58 51.7
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 2.7e-07 58.5 45 64.4
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 2.7e-07 58.5 59 52.5
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 3.5e-07 58.2 58 50.0
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 4.6e-07 57.8 58 48.3
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 4.6e-07 57.8 58 55.2
SHI02098 Sapria himalayana HOM05D003361 ORTHO05D003760 6.1e-07 57.4 58 51.7
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 1.0e-06 56.6 59 50.8
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 1.3e-06 56.2 59 52.5
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 1.8e-06 55.8 58 48.3
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 1.8e-06 55.8 58 50.0
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 2.3e-06 55.5 58 50.0
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 3.0e-06 55.1 59 50.8
unitig_699.g19089 Utricularia gibba HOM05D003361 ORTHO05D003760 3.0e-06 55.1 58 48.3
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 3.9e-06 54.7 59 50.8
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 3.9e-06 54.7 58 50.0
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 5.1e-06 54.3 59 50.8
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 5.1e-06 54.3 59 50.8
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 5.1e-06 54.3 60 55.0
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 5.1e-06 54.3 57 49.1
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 6.7e-06 53.9 58 46.6
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 6.7e-06 53.9 58 48.3
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 6.7e-06 53.9 59 54.2
Solyc07g007420.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 8.7e-06 53.5 58 50.0
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 8.7e-06 53.5 58 50.0


User provided reference genes

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