Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1214300 Malus domestica HOM05D006506 ORTHO05D007809 8.0e-180 633.6 320 100.0
Prupe.3G090200 Prunus persica HOM05D006506 ORTHO05D007809 1.9e-173 612.5 320 95.0
Cfa001948 Carpinus fangiana HOM05D006506 ORTHO05D007809 1.6e-164 582.8 320 90.3
FAN14G4998 Fragaria x ananassa HOM05D000001 ORTHO05D007809 5.2e-163 577.8 320 89.7
Haze_13452 Corylus avellana HOM05D006506 ORTHO05D007809 8.9e-163 577.0 320 89.4
RcHm_v2.0_Chr2g0134931 Rosa chinensis HOM05D006506 ORTHO05D007809 1.5e-162 576.2 320 89.7
FvH4_6g29440 Fragaria vesca HOM05D006506 ORTHO05D007809 2.0e-162 575.9 320 89.4
COL.COLO4_11906 Corchorus olitorius HOM05D006506 ORTHO05D007809 4.4e-162 574.7 320 88.8
FAN05G2665 Fragaria x ananassa HOM05D000001 ORTHO05D007809 7.5e-162 573.9 320 89.4
FAN09G0903 Fragaria x ananassa HOM05D006506 ORTHO05D007809 7.5e-162 573.9 320 89.4
Duzib160G0645 Durio zibethinus HOM05D006506 ORTHO05D007809 1.7e-161 572.8 320 87.8
Thecc.06G030600 Theobroma cacao HOM05D006506 ORTHO05D007809 1.7e-161 572.8 317 89.0
FAN02G0099 Fragaria x ananassa HOM05D006506 ORTHO05D007809 2.9e-161 572.0 320 88.8
CsaV3_7G032300 Cucumis sativus L. HOM05D006506 ORTHO05D007809 3.2e-160 568.5 320 88.8
Duzib160G0598 Durio zibethinus HOM05D006506 ORTHO05D007809 4.1e-160 568.2 320 86.9
MELO3C023430.2 Cucumis melo HOM05D006506 ORTHO05D007809 2.0e-159 565.8 320 88.1
Sed0005275 Sechium edule HOM05D006506 ORTHO05D007809 4.6e-159 564.7 320 87.2
CiPaw.01G249400 Carya illinoinensis HOM05D006506 ORTHO05D007809 1.0e-158 563.5 320 87.5
TWI75G0153 Tripterygium wilfordii HOM05D006506 ORTHO05D007809 3.0e-158 562.0 320 85.9
CANSAT56G2592 Cannabis sativa HOM05D006506 ORTHO05D007809 8.6e-158 560.5 318 87.1
Gohir.D06G120300 Gossypium hirsutum HOM05D006506 ORTHO05D007809 1.9e-157 559.3 320 86.2
Gohir.A06G107700 Gossypium hirsutum HOM05D006506 ORTHO05D007809 4.3e-157 558.1 320 85.9
Gorai.010G138400 Gossypium raimondii HOM05D006506 ORTHO05D007809 7.3e-157 557.4 320 85.9
Cpa.g.sc67.28 Carica papaya HOM05D006506 ORTHO05D007809 5.8e-154 547.7 320 84.1
Dinv38132 Davidia involucrata HOM05D006506 ORTHO05D007809 1.1e-152 543.5 328 82.9
Duzib235G0689 Durio zibethinus HOM05D006506 ORTHO05D007809 3.2e-152 542.0 322 84.2
DCAR_021353 Daucus carota HOM05D006506 ORTHO05D007809 4.1e-152 541.6 326 83.4
Ciclev10026100m.g Citrus clementina HOM05D006506 ORTHO05D007809 7.0e-152 540.8 319 85.0
GSVIVG01017366001 Vitis vinifera HOM05D006506 ORTHO05D007809 1.7e-150 536.2 322 81.7
Actinidia15748 Actinidia chinensis HOM05D006506 ORTHO05D007809 2.5e-149 532.3 327 80.1
ECA232G3059 Erigeron canadensis HOM05D006506 ORTHO05D007809 5.6e-149 531.2 321 81.6
Lj2g0016250 Lotus japonicus HOM05D006506 ORTHO05D007809 4.7e-148 528.1 322 80.4
CSS0043074 Camellia sinensis var. sinensis HOM05D006506 ORTHO05D007809 1.4e-147 526.6 327 80.1
Potri.001G201700 Populus trichocarpa HOM05D006506 ORTHO05D007809 2.3e-147 525.8 321 82.6
CSS0005655 Camellia sinensis var. sinensis HOM05D006506 ORTHO05D007809 5.2e-147 524.6 327 79.8
SHI11239 Sapria himalayana HOM05D006506 ORTHO05D007809 2.0e-146 522.7 322 79.8
Sabra01G0159300 Salix brachista HOM05D006506 ORTHO05D007809 2.6e-146 522.3 322 82.3
CARHR042650 Cardamine hirsuta HOM05D006506 ORTHO05D007809 4.4e-146 521.5 320 80.3
Peaxi162Scf00553g00510 Petunia axillaris HOM05D006506 ORTHO05D007809 4.4e-146 521.5 328 79.6
Carub.0001s4149 Capsella rubella HOM05D006506 ORTHO05D007809 5.8e-146 521.2 320 80.6
AL1G60780 Arabidopsis lyrata HOM05D006506 ORTHO05D007809 7.5e-146 520.8 320 80.3
arahy.Tifrunner.gnm1.ann1.9QS0XN Arachis hypogaea HOM05D006506 ORTHO05D007809 7.5e-146 520.8 320 78.8
AT1G52530 Arabidopsis thaliana HOM05D006506 ORTHO05D007809 1.7e-145 519.6 320 79.7
HanXRQChr16g0500351 Helianthus annuus HOM05D006506 ORTHO05D007809 1.7e-145 519.6 325 80.3
Lsat_1_v5_gn_4_87520 Lactuca sativa HOM05D006506 ORTHO05D007809 1.7e-145 519.6 323 80.5
arahy.Tifrunner.gnm1.ann1.SP1H5F Arachis hypogaea HOM05D006506 ORTHO05D007809 4.9e-145 518.1 320 78.1
BcaB02g10986 Brassica carinata HOM05D006506 ORTHO05D007809 6.4e-145 517.7 320 79.4
Sp1g39080 Schrenkiella parvula HOM05D006506 ORTHO05D007809 8.3e-145 517.3 320 79.4
TAR371G0436 Trochodendron aralioides HOM05D006506 ORTHO05D007809 8.3e-145 517.3 321 79.1
Aa31LG10G2470 Aethionema arabicum HOM05D006506 ORTHO05D007809 1.1e-144 516.9 320 79.4
Rhsim08G0211600 Rhododendron simsii HOM05D006506 ORTHO05D007809 1.4e-144 516.5 327 78.3
Thhalv10011665m.g Eutrema salsugineum HOM05D006506 ORTHO05D007809 2.4e-144 515.8 320 78.8
BraA05t20791Z Brassica rapa HOM05D006506 ORTHO05D007809 3.2e-144 515.4 320 79.1
A05p18940 Brassica napus HOM05D006506 ORTHO05D007809 4.1e-144 515.0 320 79.1
Nitab4.5_0005461g0020 Nicotiana tabacum HOM05D006506 ORTHO05D007809 1.6e-143 513.1 328 77.7
vmacro19011 Vaccinium macrocarpon HOM05D006506 ORTHO05D007809 1.6e-143 513.1 324 78.4
Ca_04862_v3 Cicer arietinum L. HOM05D006506 ORTHO05D007809 4.6e-143 511.5 320 77.5
Nitab4.5_0010868g0010 Nicotiana tabacum HOM05D006506 ORTHO05D007809 6.0e-143 511.1 328 77.4
PGR031G2298 Punica granatum HOM05D006506 ORTHO05D007809 1.0e-142 510.4 323 79.3
PGSC0003DMG400014148 Solanum tuberosum HOM05D006506 ORTHO05D007809 3.0e-142 508.8 328 75.3
BcaC08g44001 Brassica carinata HOM05D006506 ORTHO05D007809 5.1e-142 508.1 320 78.8
CAN.G407.9 Capsicum annuum HOM05D006506 ORTHO05D007809 1.1e-141 506.9 328 75.9
C06p14060 Brassica napus HOM05D006506 ORTHO05D007809 1.5e-141 506.5 320 78.4
BolC6t36584H Brassica oleracea HOM05D006506 ORTHO05D007809 1.5e-141 506.5 320 78.4
Cc04_g04540 Coffea canephora HOM05D006506 ORTHO05D007809 2.5e-141 505.8 324 77.2
PSO210G7208 Papaver somniferum HOM05D006506 ORTHO05D007809 3.3e-141 505.4 320 77.5
Lalb_Chr06g0175141 Lupinus albus HOM05D006506 ORTHO05D007809 1.2e-140 503.4 326 77.0
Sopen03g036430 Solanum pennellii HOM05D006506 ORTHO05D007809 1.6e-140 503.1 328 74.4
Ciclev10027407m.g Citrus clementina HOM05D006506 ORTHO05D007809 4.7e-140 501.5 318 80.2
Phvul.004G032600 Phaseolus vulgaris HOM05D006506 ORTHO05D007809 5.2e-139 498.0 320 75.9
TPR.G16552 Trifolium pratense HOM05D006506 ORTHO05D007809 6.8e-139 497.7 320 75.6
Psat1g070040 Pisum sativum HOM05D006506 ORTHO05D007809 8.9e-139 497.3 320 75.9
Medtr1g082730 Medicago truncatula HOM05D006506 ORTHO05D007809 2.6e-138 495.7 320 75.0
VMungo0464G1487 Vigna mungo HOM05D006506 ORTHO05D007809 4.4e-138 495.0 321 76.0
MBI06_g17213_MAGBIO Magnolia biondii HOM05D006506 ORTHO05D007809 7.6e-138 494.2 317 76.3
Oeu027841.1 Olea europaea HOM05D006506 ORTHO05D007809 5.4e-136 488.0 325 75.4
Glyma.13G059800 Glycine max HOM05D006506 ORTHO05D007809 9.2e-136 487.3 320 74.1
Ciclev10026188m.g Citrus clementina HOM05D006506 ORTHO05D007809 8.6e-134 480.7 318 78.3
Ciclev10027493m.g Citrus clementina HOM05D006506 ORTHO05D007809 4.3e-133 478.4 299 82.3
Ciclev10027064m.g Citrus clementina HOM05D006506 ORTHO05D007809 2.4e-131 472.6 299 80.6
MSTRG.11150 Avicennia marina HOM05D006506 ORTHO05D007809 2.4e-128 462.6 320 70.9
Solyc03g117530.1 Solanum lycopersicum HOM05D006506 ORTHO05D007809 2.1e-127 459.5 303 73.6
Ciclev10027055m.g Citrus clementina HOM05D006506 ORTHO05D007809 6.0e-127 458.0 305 78.7
HPP92_007331 Vanilla planifolia HOM05D006506 ORTHO05D007809 1.7e-126 456.4 317 69.7
ATR0605G102 Amborella trichopoda HOM05D006506 ORTHO05D007809 3.6e-124 448.7 320 69.4
SGA_v2.0_scaffold37G14756 Striga asiatica HOM05D006506 ORTHO05D007809 3.1e-123 445.7 320 68.8
Aqoxy7G02198 Aquilegia oxysepala HOM05D006506 ORTHO05D007809 9.0e-123 444.1 296 74.0
SalBow2G1795 Salvia bowleyana HOM05D006506 ORTHO05D007809 9.0e-123 444.1 318 67.9
unitig_62.g23595 Utricularia gibba HOM05D006506 ORTHO05D007809 9.0e-123 444.1 320 68.1
Manes.11G058300 Manihot esculenta HOM05D006506 ORTHO05D007809 8.4e-121 437.6 258 84.5
Migut.I00752 Erythranthe guttata HOM05D006506 ORTHO05D007809 5.1e-118 428.3 320 66.9
THA.LOC104818016 Tarenaya hassleriana HOM05D006506 ORTHO05D007809 6.2e-116 421.4 258 81.4
SEGI_33428 Sequoiadendron giganteum HOM05D006506 ORTHO05D007809 4.0e-115 418.7 319 63.6
Ah.08g214330 Amaranthus hybridus HOM05D006506 ORTHO05D007809 1.2e-111 407.1 320 64.1
HPP92_007333 Vanilla planifolia HOM05D006506 ORTHO05D007809 1.9e-109 399.8 320 64.1
Os04g0528400 Oryza sativa ssp. japonica HOM05D006506 ORTHO05D007809 9.6e-109 397.5 326 59.2
AUR62030047 Chenopodium quinoa HOM05D006506 ORTHO05D007809 1.6e-108 396.7 318 62.3
EL10Ac7g17638 Beta vulgaris HOM05D006506 ORTHO05D007809 4.8e-108 395.2 311 63.7
Ciclev10027054m.g Citrus clementina HOM05D006506 ORTHO05D007809 6.2e-108 394.8 257 80.9
AagrBONN_evm.TU.Sc2ySwM_117.4079 Anthoceros agrestis HOM05D006506 ORTHO05D007809 3.8e-105 385.6 316 58.5
Atru.chr1.2888 Acer truncatum HOM05D006506 ORTHO05D007809 4.2e-104 382.1 228 84.6
Pp3c1_24880 Physcomitrium patens HOM05D006506 ORTHO05D007809 8.2e-100 367.9 317 56.5
AUR62002633 Chenopodium quinoa HOM05D006506 ORTHO05D007809 7.6e-98 361.3 293 61.8
Lj9E498T1 Lonicera japonica HOM05D006506 ORTHO05D007809 5.0e-97 358.6 214 83.2
Mapoly0090s0026 Marchantia polymorpha HOM05D006506 ORTHO05D007809 7.9e-95 351.3 320 55.3
SMO115G0207 Selaginella moellendorffii HOM05D006506 ORTHO05D007809 3.0e-94 349.4 317 53.0
Zm00001eb427100 Zea mays HOM05D006506 ORTHO05D007809 3.0e-94 349.4 327 53.8
Ciclev10027056m.g Citrus clementina HOM05D006506 ORTHO05D007809 9.7e-93 344.4 306 63.4
CBR_g8656 Chara braunii HOM05D006506 ORTHO05D007809 3.2e-88 329.3 321 51.1
CDE11G1201 Ceratophyllum demersum HOM05D006506 ORTHO05D007809 3.6e-87 325.9 285 60.0
Sc05g0005410 Simmondsia chinensis HOM05D006506 ORTHO05D007809 4.8e-84 315.5 285 57.2
CDE08G0717 Ceratophyllum demersum HOM05D006506 ORTHO05D007809 2.7e-79 299.7 214 68.2
Prupe.2G072500 Prunus persica HOM05D006506 ORTHO05D007809 3.1e-75 286.2 297 55.9
TPR.G26194 Trifolium pratense HOM05D002479 ORTHO05D007809 2.6e-45 186.8 161 60.9
Solyc04g026070.1 Solanum lycopersicum HOM05D006506 ORTHO05D007809 1.4e-38 164.5 121 64.5
Cre12.g524350 Chlamydomonas reinhardtii HOM05D006506 ORTHO05D007809 1.2e-34 151.4 270 37.4
Ciclev10027644m.g Citrus clementina HOM05D006506 ORTHO05D007809 1.6e-34 151.0 108 71.3
ATR0068G037 Amborella trichopoda HOM05D006506 ORTHO05D007809 1.6e-31 141.0 116 61.2
SMO018G0003 Selaginella moellendorffii HOM05D006506 ORTHO05D007809 5.2e-30 136.0 112 58.0
Ciclev10026990m.g Citrus clementina HOM05D006506 ORTHO05D007809 2.9e-28 130.2 108 66.7
Solyc08g044480.1 Solanum lycopersicum HOM05D006506 ORTHO05D007809 7.8e-26 122.1 136 47.1
PRCOL_00003381 Prasinoderma coloniale HOM05D006506 ORTHO05D007809 2.3e-25 120.6 354 28.5
Nn4g24996 Nelumbo nucifera HOM05D006506 ORTHO05D007809 2.1e-23 114.0 62 83.9
MBI08_g32097_MAGBIO Magnolia biondii HOM05D006506 ORTHO05D007809 1.8e-22 110.9 72 76.4
MCO05G139 Micromonas commoda HOM05D006506 ORTHO05D007809 2.2e-20 104.0 310 27.4
Mapoly1721s0002 Marchantia polymorpha HOM05D006506 ORTHO05D007809 9.9e-13 78.6 62 59.7


User provided reference genes

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