Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1119100 Malus domestica HOM05D001865 ORTHO05D001815 2.1e-53 212.2 118 100.0
MD09G1130000 Malus domestica HOM05D001865 ORTHO05D001815 2.9e-42 175.3 119 84.0
Prupe.3G195100 Prunus persica HOM05D001865 ORTHO05D001815 3.7e-42 174.9 123 84.6
RcHm_v2.0_Chr2g0155661 Rosa chinensis HOM05D001865 ORTHO05D001815 2.1e-32 142.5 122 69.7
FAN05G1454 Fragaria x ananassa HOM05D001865 ORTHO05D001815 2.3e-31 139.0 116 71.6
FAN02G1396 Fragaria x ananassa HOM05D001865 ORTHO05D001815 3.9e-31 138.3 116 71.6
FAN09G1376 Fragaria x ananassa HOM05D001865 ORTHO05D001815 1.9e-30 136.0 116 69.8
FAN09G3361 Fragaria x ananassa HOM05D001865 ORTHO05D001815 1.9e-30 136.0 116 69.8
FvH4_6g40430 Fragaria vesca HOM05D001865 ORTHO05D001815 2.1e-29 132.5 116 67.2
QL04p067054 Quercus lobata HOM05D001865 ORTHO05D001815 1.4e-28 129.8 124 64.5
FAN14G3808 Fragaria x ananassa HOM05D001865 ORTHO05D001815 8.9e-28 127.1 116 65.5
Duzib133G0666 Durio zibethinus HOM05D001865 ORTHO05D001815 1.3e-26 123.2 100 69.0
CiPaw.03G283500 Carya illinoinensis HOM05D001865 ORTHO05D001815 1.7e-26 122.9 104 68.3
Cfa014205 Carpinus fangiana HOM05D001865 ORTHO05D001815 6.4e-26 120.9 124 61.3
Manes.12G064300 Manihot esculenta HOM05D001865 ORTHO05D001815 2.4e-25 119.0 117 61.5
Thecc.01G199100 Theobroma cacao HOM05D001865 ORTHO05D001815 2.4e-25 119.0 95 69.5
CSS0043365 Camellia sinensis var. sinensis HOM05D001865 ORTHO05D001815 4.2e-25 118.2 107 66.4
CSS0002483 Camellia sinensis var. sinensis HOM05D001865 ORTHO05D001815 5.4e-25 117.9 107 67.3
CSS0007019 Camellia sinensis var. sinensis HOM05D001865 ORTHO05D001815 5.4e-25 117.9 107 67.3
Gohir.A07G163500 Gossypium hirsutum HOM05D001865 ORTHO05D001815 5.4e-25 117.9 93 71.0
Gohir.D07G170500 Gossypium hirsutum HOM05D001865 ORTHO05D001815 9.3e-25 117.1 92 70.7
Gorai.001G190700 Gossypium raimondii HOM05D001865 ORTHO05D001815 9.3e-25 117.1 92 70.7
CANSAT64G2839 Cannabis sativa HOM05D001865 ORTHO05D001815 1.2e-24 116.7 110 65.5
Ciclev10015636m.g Citrus clementina HOM05D001865 ORTHO05D001815 2.1e-24 115.9 109 62.4
Duzib211G0493 Durio zibethinus HOM05D001865 ORTHO05D001815 6.0e-24 114.4 93 68.8
Actinidia35197 Actinidia chinensis HOM05D001865 ORTHO05D001815 7.8e-24 114.0 104 64.4
Actinidia18827 Actinidia chinensis HOM05D002257 ORTHO05D002417 1.0e-23 113.6 97 68.0
Dinv21319 Davidia involucrata HOM05D001865 ORTHO05D001815 1.7e-23 112.8 96 66.7
Dinv05321 Davidia involucrata HOM05D001865 ORTHO05D001815 2.3e-23 112.5 96 65.6
Sed0002464 Sechium edule HOM05D001865 ORTHO05D001815 3.9e-23 111.7 92 68.5
TWI18G0602 Tripterygium wilfordii HOM05D001865 ORTHO05D001815 5.1e-23 111.3 93 68.8
Hma1.2p1_0599F.1_g186990 Hydrangea macrophylla HOM05D001865 ORTHO05D001815 6.6e-23 110.9 104 62.5
TWI36G0264 Tripterygium wilfordii HOM05D001865 ORTHO05D001815 6.6e-23 110.9 117 59.0
Manes.13G060201 Manihot esculenta HOM05D001865 ORTHO05D001815 8.7e-23 110.5 98 63.3
Lj8C137G9 Lonicera japonica HOM05D001865 ORTHO05D001815 1.1e-22 110.2 96 65.6
Potri.014G170100 Populus trichocarpa HOM05D001865 ORTHO05D001815 1.1e-22 110.2 93 65.6
Rhsim06G0178600 Rhododendron simsii HOM05D001865 ORTHO05D001815 1.5e-22 109.8 97 64.9
Sabra14G0129600 Salix brachista HOM05D001865 ORTHO05D001815 1.9e-22 109.4 93 63.4
Duzib138G0861 Durio zibethinus HOM05D001865 ORTHO05D001815 2.5e-22 109.0 95 66.3
AL9U12220 Arabidopsis lyrata HOM05D001865 ORTHO05D001815 3.3e-22 108.6 111 55.9
AT4G12710 Arabidopsis thaliana HOM05D001865 ORTHO05D001815 4.3e-22 108.2 103 60.2
Phvul.008G189800 Phaseolus vulgaris HOM05D001865 ORTHO05D001815 4.3e-22 108.2 111 61.3
Atru.chr6.3427 Acer truncatum HOM05D001865 ORTHO05D001815 5.6e-22 107.8 93 65.6
HanXRQChr13g0389971 Helianthus annuus HOM05D001865 ORTHO05D001815 1.6e-21 106.3 96 62.5
COL.COLO4_19650 Corchorus olitorius HOM05D001865 ORTHO05D001815 2.8e-21 105.5 107 60.7
Cpa.g.sc136.49 Carica papaya HOM05D001865 ORTHO05D001815 8.1e-21 104.0 93 62.4
CARHR218050 Cardamine hirsuta HOM05D001865 ORTHO05D001815 1.1e-20 103.6 96 61.5
Glyma.14G190000 Glycine max HOM05D001865 ORTHO05D001815 1.1e-20 103.6 110 60.0
VMungo0647G1099 Vigna mungo HOM05D001865 ORTHO05D001815 1.8e-20 102.8 117 56.4
Glyma.02G223100 Glycine max HOM05D001865 ORTHO05D001815 4.0e-20 101.7 92 67.4
Eucgr.K01391 Eucalyptus grandis HOM05D001865 ORTHO05D001815 6.9e-20 100.9 94 60.6
arahy.Tifrunner.gnm1.ann1.HWBU4H Arachis hypogaea HOM05D001865 ORTHO05D001815 1.2e-19 100.1 84 66.7
THA.LOC104808836 Tarenaya hassleriana HOM05D001865 ORTHO05D001815 1.2e-19 100.1 94 62.8
arahy.Tifrunner.gnm1.ann1.R1NTZK Arachis hypogaea HOM05D001865 ORTHO05D001815 1.5e-19 99.8 84 66.7
MELO3C013456.2 Cucumis melo HOM05D001865 ORTHO05D001815 1.5e-19 99.8 117 53.0
Carub.0007s3036 Capsella rubella HOM05D001865 ORTHO05D001815 4.5e-19 98.2 116 52.6
LjContig00155g0023357 Lotus japonicus HOM05D001865 ORTHO05D001815 5.8e-19 97.8 124 52.4
Aa31sc762G10 Aethionema arabicum HOM05D001865 ORTHO05D001815 9.9e-19 97.1 87 64.4
Lalb_Chr10g0103131 Lupinus albus HOM05D001865 ORTHO05D001815 1.3e-18 96.7 122 52.5
Lsat_1_v5_gn_9_102560 Lactuca sativa HOM05D001865 ORTHO05D001815 3.8e-18 95.1 98 56.1
Lsat_1_v5_gn_7_97281 Lactuca sativa HOM05D001865 ORTHO05D001815 4.9e-18 94.7 97 58.8
CsaV3_6G009720 Cucumis sativus L. HOM05D006836 ORTHO05D008691 1.4e-17 93.2 81 63.0
MBI14_g37015_MAGBIO Magnolia biondii HOM05D001865 ORTHO05D001815 1.2e-16 90.1 96 54.2
GSVIVG01030122001 Vitis vinifera HOM05D001865 ORTHO05D001815 1.2e-16 90.1 97 55.7
ATR0751G217 Amborella trichopoda HOM05D001865 ORTHO05D001815 6.0e-16 87.8 104 50.0
ECA236G2224 Erigeron canadensis HOM05D001865 ORTHO05D001815 1.3e-15 86.7 116 51.7
Migut.C01132 Erythranthe guttata HOM05D001865 ORTHO05D001815 1.3e-15 86.7 88 55.7
DCAR_021085 Daucus carota HOM05D001865 ORTHO05D001815 3.0e-15 85.5 97 50.5
TPR.G13838 Trifolium pratense HOM05D001865 ORTHO05D001815 1.5e-14 83.2 120 49.2
MSTRG.14904 Avicennia marina HOM05D001865 ORTHO05D001815 2.5e-14 82.4 87 55.2
HanXRQChr11g0329471 Helianthus annuus HOM05D001865 ORTHO05D001815 2.5e-14 82.4 101 54.5
HanXRQChr03g0074971 Helianthus annuus HOM05D001865 ORTHO05D001815 4.3e-14 81.6 89 50.6
Oeu036995.1 Olea europaea HOM05D001865 ORTHO05D001815 3.7e-13 78.6 87 54.0
Cc05_g02020 Coffea canephora HOM05D001865 ORTHO05D001815 1.4e-12 76.6 119 49.6
SalBow7G1690 Salvia bowleyana HOM05D001865 ORTHO05D001815 1.8e-12 76.3 78 57.7
Nitab4.5_0005354g0020 Nicotiana tabacum HOM05D001865 ORTHO05D001815 9.0e-12 73.9 98 56.1
SalBow1G8204 Salvia bowleyana HOM05D001865 ORTHO05D001815 9.0e-12 73.9 76 59.2
CAN.G1071.6 Capsicum annuum HOM05D001865 ORTHO05D001815 1.2e-11 73.6 112 50.9
SGA_v2.0_scaffold73G24481 Striga asiatica HOM05D001865 ORTHO05D001815 1.5e-11 73.2 84 51.2
Solyc07g045220.3 Solanum lycopersicum HOM05D001865 ORTHO05D001815 2.0e-11 72.8 91 58.2
Sopen07g023770 Solanum pennellii HOM05D001865 ORTHO05D001815 2.0e-11 72.8 91 58.2
PGSC0003DMG400017386 Solanum tuberosum HOM05D001865 ORTHO05D001815 2.0e-11 72.8 94 56.4
unitig_26.g10393 Utricularia gibba HOM05D001865 ORTHO05D001815 2.6e-11 72.4 116 41.4
Nitab4.5_0003086g0020 Nicotiana tabacum HOM05D001865 ORTHO05D001815 3.4e-11 72.0 108 50.9
PSO210G1534 Papaver somniferum HOM05D001865 ORTHO05D001815 9.9e-11 70.5 99 43.4
SEGI_12042 Sequoiadendron giganteum HOM05D001865 ORTHO05D001815 1.7e-10 69.7 88 45.5
PSO210G0041 Papaver somniferum HOM05D001865 ORTHO05D001815 6.4e-10 67.8 100 44.0
Nn1g00083 Nelumbo nucifera HOM05D001865 ORTHO05D001815 1.9e-09 66.2 63 55.6
Nn1g07759 Nelumbo nucifera HOM05D001865 ORTHO05D001815 1.9e-09 66.2 63 55.6
SMO356G0647 Selaginella moellendorffii HOM05D001865 ORTHO05D001815 1.6e-08 63.2 68 55.9
HPP92_021914 Vanilla planifolia HOM05D001865 ORTHO05D001815 1.0e-07 60.5 96 41.7
SEGI_19824 Sequoiadendron giganteum HOM05D001865 ORTHO05D001815 1.3e-07 60.1 104 39.4
Peaxi162Scf01164g00021 Petunia axillaris HOM05D001865 ORTHO05D001815 1.8e-07 59.7 101 49.5
Os01g0112500 Oryza sativa ssp. japonica HOM05D001865 ORTHO05D001815 2.3e-07 59.3 67 55.2
ECA240G3694 Erigeron canadensis HOM05D001865 ORTHO05D001815 1.5e-06 56.6 60 56.7
Psat2g060360 Pisum sativum HOM05D001865 ORTHO05D001815 1.9e-06 56.2 66 54.5
Zm00001eb334600 Zea mays HOM05D001865 ORTHO05D001815 7.4e-06 54.3 67 49.3
Medtr5g069340 Medicago truncatula HOM05D001865 ORTHO05D001815 9.6e-06 53.9 90 43.3


User provided reference genes

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