Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1108500 Malus domestica HOM05D006530 ORTHO05D008283 4.1e-229 797.7 413 100.0
MD09G1117000 Malus domestica HOM05D006530 ORTHO05D008283 1.1e-160 570.5 651 54.8
Prupe.3G206900 Prunus persica HOM05D006530 ORTHO05D008283 6.4e-105 385.2 708 39.4
FAN14G2540 Fragaria x ananassa HOM05D006530 ORTHO05D008283 5.8e-82 308.9 627 37.8
RcHm_v2.0_Chr2g0157621 Rosa chinensis HOM05D006530 ORTHO05D008283 1.7e-81 307.4 657 36.8
FvH4_6g41820 Fragaria vesca HOM05D006530 ORTHO05D008283 2.7e-79 300.1 656 36.3
FAN09G3579 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.3e-78 297.7 657 35.9
Haze_12746 Corylus avellana HOM05D006530 ORTHO05D008283 2.6e-66 256.9 636 34.9
Thecc.01G184900 Theobroma cacao HOM05D006530 ORTHO05D008283 3.8e-65 253.1 677 32.9
CSS0049970 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 5.5e-64 249.2 678 32.9
Cfa014298 Carpinus fangiana HOM05D006530 ORTHO05D008283 5.5e-64 249.2 636 34.7
CSS0002282 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 9.3e-64 248.4 678 32.9
Atru.chr6.3278 Acer truncatum HOM05D006530 ORTHO05D008283 1.6e-63 247.7 686 32.1
Atru.chr6.3294 Acer truncatum HOM05D006530 ORTHO05D008283 1.6e-63 247.7 686 32.5
COL.COLO4_32787 Corchorus olitorius HOM05D006530 ORTHO05D008283 7.9e-63 245.4 665 32.3
Hma1.2p1_0445F.1_g154110 Hydrangea macrophylla HOM05D006530 ORTHO05D008283 1.9e-61 240.7 618 34.6
Duzib133G1057 Durio zibethinus HOM05D006530 ORTHO05D008283 5.3e-59 232.6 678 30.8
Gorai.001G218200 Gossypium raimondii HOM05D006530 ORTHO05D008283 7.6e-58 228.8 672 30.2
Cpa.g.sc132.47 Carica papaya HOM05D006530 ORTHO05D008283 2.2e-57 227.3 576 35.2
Gohir.A07G188400 Gossypium hirsutum HOM05D006530 ORTHO05D008283 2.5e-56 223.8 660 32.6
QL08p029933 Quercus lobata HOM05D006530 ORTHO05D008283 3.2e-56 223.4 704 30.7
Rhsim06G0169800 Rhododendron simsii HOM05D006530 ORTHO05D008283 2.7e-55 220.3 656 31.9
Gohir.D07G195000 Gossypium hirsutum HOM05D006530 ORTHO05D008283 6.1e-55 219.2 669 31.4
TWI18G1412 Tripterygium wilfordii HOM05D006530 ORTHO05D008283 2.5e-53 213.8 642 32.9
VMungo0540G0580 Vigna mungo HOM05D006530 ORTHO05D008283 2.5e-53 213.8 551 34.3
Ciclev10014523m.g Citrus clementina HOM05D006530 ORTHO05D008283 1.6e-52 211.1 653 31.4
CANSAT64G1714 Cannabis sativa HOM05D006530 ORTHO05D008283 8.2e-52 208.8 683 31.0
Psat5g104000 Pisum sativum HOM05D006530 ORTHO05D008283 1.8e-51 207.6 595 32.8
DCAR_019250 Daucus carota HOM05D006530 ORTHO05D008283 2.4e-51 207.2 663 33.2
Aqoxy1G02869 Aquilegia oxysepala HOM05D006530 ORTHO05D008283 5.3e-51 206.1 688 29.8
Sabra14G0122100 Salix brachista HOM05D006530 ORTHO05D008283 1.2e-50 204.9 693 30.3
Nn1g03345 Nelumbo nucifera HOM05D006530 ORTHO05D008283 2.9e-49 200.3 709 30.6
Potri.014G160400 Populus trichocarpa HOM05D006530 ORTHO05D008283 5.0e-49 199.5 700 30.3
Lalb_Chr08g0236491 Lupinus albus HOM05D006530 ORTHO05D008283 6.5e-49 199.1 615 31.9
THA.LOC104808864 Tarenaya hassleriana HOM05D006530 ORTHO05D008283 6.5e-49 199.1 654 29.8
Medtr3g082840 Medicago truncatula HOM05D006530 ORTHO05D008283 8.5e-49 198.7 575 33.2
AT5G35690 Arabidopsis thaliana HOM05D006530 ORTHO05D008283 7.2e-48 195.7 593 30.0
Glyma.20G058500 Glycine max HOM05D006530 ORTHO05D008283 1.0e-46 191.8 600 30.8
SGA_v2.0_scaffold49G18363 Striga asiatica HOM05D006530 ORTHO05D008283 1.4e-46 191.4 458 34.3
ECA236G0541 Erigeron canadensis HOM05D006530 ORTHO05D008283 1.8e-46 191.0 636 30.7
arahy.Tifrunner.gnm1.ann1.B2HSRW Arachis hypogaea HOM05D006530 ORTHO05D008283 3.9e-46 189.9 578 31.1
Phvul.006G013400 Phaseolus vulgaris HOM05D006530 ORTHO05D008283 5.1e-46 189.5 575 31.0
TAR624G0329 Trochodendron aralioides HOM05D006530 ORTHO05D008283 5.1e-46 189.5 719 27.4
Lj1A785T50 Lonicera japonica HOM05D006530 ORTHO05D008283 6.7e-46 189.1 673 28.1
arahy.Tifrunner.gnm1.ann1.KP8KK1 Arachis hypogaea HOM05D006530 ORTHO05D008283 1.5e-45 188.0 582 31.6
AL7G44540 Arabidopsis lyrata HOM05D006530 ORTHO05D008283 4.4e-45 186.4 595 29.2
Lj6g0023666 Lotus japonicus HOM05D006530 ORTHO05D008283 5.7e-45 186.0 583 30.2
Eucgr.K00730 Eucalyptus grandis HOM05D006530 ORTHO05D008283 1.3e-44 184.9 660 28.6
Ca_16350_v3 Cicer arietinum L. HOM05D006530 ORTHO05D008283 6.3e-44 182.6 586 30.4
MELO3C019717.2 Cucumis melo HOM05D006530 ORTHO05D008283 8.2e-44 182.2 690 28.3
Actinidia09758 Actinidia chinensis HOM05D006530 ORTHO05D008283 1.4e-43 181.4 617 31.0
GSVIVG01030533001 Vitis vinifera HOM05D006530 ORTHO05D008283 1.2e-42 178.3 379 37.2
HanXRQChr16g0508331 Helianthus annuus HOM05D006530 ORTHO05D008283 1.5e-42 177.9 595 29.6
CsaV3_6G015570 Cucumis sativus L. HOM05D006530 ORTHO05D008283 3.4e-42 176.8 690 28.0
Cc05_g02470 Coffea canephora HOM05D006530 ORTHO05D008283 1.7e-41 174.5 625 29.3
PSO541G4152 Papaver somniferum HOM05D006530 ORTHO05D008283 2.2e-41 174.1 656 28.5
Sp7g06570 Schrenkiella parvula HOM05D006530 ORTHO05D008283 2.2e-41 174.1 580 29.1
CARHR217000 Cardamine hirsuta HOM05D006530 ORTHO05D008283 5.0e-41 172.9 570 29.3
AUR62015107 Chenopodium quinoa HOM05D006530 ORTHO05D008283 5.0e-41 172.9 655 27.9
Thhalv10003827m.g Eutrema salsugineum HOM05D006530 ORTHO05D008283 3.2e-40 170.2 570 29.6
Sopen12g001950 Solanum pennellii HOM05D006530 ORTHO05D008283 3.2e-40 170.2 630 29.2
Nitab4.5_0000622g0140 Nicotiana tabacum HOM05D006530 ORTHO05D008283 9.4e-40 168.7 632 29.0
Manes.12G056700 Manihot esculenta HOM05D006530 ORTHO05D008283 1.6e-39 167.9 358 39.9
Peaxi162Scf00047g02037 Petunia axillaris HOM05D006530 ORTHO05D008283 4.7e-39 166.4 644 28.3
Dinv08706 Davidia involucrata HOM05D006530 ORTHO05D008283 6.1e-39 166.0 608 29.4
Solyc12g005980.2 Solanum lycopersicum HOM05D006530 ORTHO05D008283 7.9e-39 165.6 630 28.4
SalBow3G0397 Salvia bowleyana HOM05D006530 ORTHO05D008283 2.3e-38 164.1 628 28.5
AUR62017570 Chenopodium quinoa HOM05D006530 ORTHO05D008283 3.9e-38 163.3 655 28.2
A04p09880 Brassica napus HOM05D006530 ORTHO05D008283 6.7e-38 162.5 560 28.4
BraA04t16650Z Brassica rapa HOM05D006530 ORTHO05D008283 6.7e-38 162.5 560 28.4
C04p43360 Brassica napus HOM05D006530 ORTHO05D008283 8.8e-38 162.2 559 28.8
BolC4t25914H Brassica oleracea HOM05D006530 ORTHO05D008283 8.8e-38 162.2 559 28.4
EL10Ac9g22807 Beta vulgaris HOM05D006530 ORTHO05D008283 1.1e-37 161.8 670 27.5
Carub.0007s3142 Capsella rubella HOM05D006530 ORTHO05D008283 1.1e-37 161.8 609 28.6
BcaC02g09488 Brassica carinata HOM05D006530 ORTHO05D008283 1.5e-37 161.4 559 29.3
Oeu061995.2 Olea europaea HOM05D006530 ORTHO05D008283 1.5e-37 161.4 197 48.2
PGSC0003DMG400013890 Solanum tuberosum HOM05D006530 ORTHO05D008283 2.0e-37 161.0 629 28.3
Migut.H01255 Erythranthe guttata HOM05D006530 ORTHO05D008283 2.6e-37 160.6 590 30.3
MSTRG.14123 Avicennia marina HOM05D006530 ORTHO05D008283 1.3e-36 158.3 639 29.0
Aa31sc124G40 Aethionema arabicum HOM05D006530 ORTHO05D008283 1.7e-36 157.9 628 28.3
PGR142G2443 Punica granatum HOM05D006530 ORTHO05D008283 2.8e-36 157.1 231 46.3
CAN.G931.8 Capsicum annuum HOM05D006530 ORTHO05D008283 6.3e-36 156.0 638 28.7
BcaB06g26968 Brassica carinata HOM05D006530 ORTHO05D008283 9.1e-35 152.1 551 28.1
vmacro12144 Vaccinium macrocarpon HOM05D006530 ORTHO05D008283 1.7e-33 147.9 768 26.7
Lsat_1_v5_gn_7_94721 Lactuca sativa HOM05D006530 ORTHO05D008283 5.5e-32 142.9 575 28.0
CiPaw.03G274100 Carya illinoinensis HOM05D006530 ORTHO05D008283 9.4e-32 142.1 567 29.5
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 2.1e-31 141.0 118 60.2
SalBow1G8616 Salvia bowleyana HOM05D006530 ORTHO05D008283 3.6e-31 140.2 661 27.4
Sed0022132 Sechium edule HOM05D006530 ORTHO05D008283 4.7e-31 139.8 119 62.2
FAN15G1469 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.8e-30 137.9 108 62.0
FAN27G2805 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.8e-30 137.9 108 62.0
unitig_26.g9922 Utricularia gibba HOM05D006530 ORTHO05D008283 2.3e-30 137.5 565 28.7
FAN02G4367 Fragaria x ananassa HOM05D006530 ORTHO05D008283 5.2e-30 136.3 158 49.4
Hund24188 Selenicereus undatus HOM05D006530 ORTHO05D008283 5.2e-30 136.3 668 27.1
ClCG02G018190 Citrullus lanatus HOM05D006530 ORTHO05D008283 5.7e-29 132.9 520 30.6
FAN03G2558 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.3e-28 131.7 149 49.0
Os08g0500800 Oryza sativa ssp. japonica HOM05D006530 ORTHO05D008283 1.3e-28 131.7 362 32.0
Zm00001eb034180 Zea mays HOM05D006530 ORTHO05D008283 1.7e-28 131.3 348 33.6
Sc20g0005070 Simmondsia chinensis HOM05D006530 ORTHO05D008283 2.2e-28 131.0 531 27.7
TPR.G7490 Trifolium pratense HOM05D006530 ORTHO05D008283 8.2e-28 129.0 241 37.8
Nitab4.5_0005875g0040 Nicotiana tabacum HOM05D006530 ORTHO05D008283 1.8e-27 127.9 619 27.6
TPR.G22470 Trifolium pratense HOM05D006530 ORTHO05D008283 9.1e-27 125.6 108 58.3
ATR1128G020 Amborella trichopoda HOM05D006530 ORTHO05D008283 2.7e-26 124.0 123 54.5
CDE10G0969 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 2.7e-26 124.0 234 35.9
HPP92_018405 Vanilla planifolia HOM05D006530 ORTHO05D008283 7.7e-26 122.5 378 29.9
CDE10G0956 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 1.5e-21 108.2 93 54.8
SEGI_11846 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 2.2e-20 104.4 114 44.7
AagrBONN_evm.TU.Sc2ySwM_228.92 Anthoceros agrestis HOM05D006530 ORTHO05D008283 2.4e-19 100.9 132 40.2
ATR1001G009 Amborella trichopoda HOM05D006530 ORTHO05D008283 1.0e-17 95.5 117 41.9
BcaB06g26965 Brassica carinata HOM05D006530 ORTHO05D008283 1.3e-17 95.1 97 45.4
SEGI_28144 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 6.1e-15 86.3 109 42.2
Pp3c20_8530 Physcomitrium patens HOM05D006530 ORTHO05D008283 2.3e-14 84.3 341 27.6
BcaB06g26964 Brassica carinata HOM05D006530 ORTHO05D008283 1.7e-12 78.2 81 48.1
SHI10239 Sapria himalayana HOM05D006530 ORTHO05D008283 6.3e-12 76.3 115 37.4
SGA_v2.0_scaffold112G31585 Striga asiatica HOM05D006530 ORTHO05D008283 9.2e-11 72.4 72 52.8


User provided reference genes

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