Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 0.0e+00 1301.6 727 100.0
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 0.0e+00 1112.8 732 84.8
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 2.2e-278 962.2 785 71.7
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 1.3e-238 830.1 751 63.4
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 8.0e-236 820.8 742 64.3
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 8.9e-235 817.4 742 63.7
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.5e-229 799.3 749 61.5
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 9.5e-229 797.3 759 61.1
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 6.8e-227 791.2 759 60.9
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 1.5e-221 773.5 737 58.3
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 6.2e-220 768.1 745 56.8
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 3.1e-219 765.8 739 57.8
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 9.8e-218 760.8 733 57.6
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 9.2e-216 754.2 744 56.5
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 1.6e-215 753.4 748 55.6
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.3e-214 750.4 732 57.4
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.7e-214 750.0 741 56.5
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 2.1e-212 743.0 744 55.8
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 2.8e-212 742.7 752 56.1
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 1.8e-211 740.0 749 56.6
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 6.8e-211 738.0 745 56.6
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 2.2e-209 733.0 708 57.8
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.4e-208 730.3 742 55.5
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.1e-208 728.8 733 56.6
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 4.3e-205 718.8 727 55.8
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 3.6e-204 715.7 679 58.6
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 8.1e-204 714.5 739 55.1
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 7.8e-199 698.0 718 53.6
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 4.3e-197 692.2 748 54.3
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 7.3e-197 691.4 737 52.4
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 3.6e-196 689.1 739 52.5
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 3.4e-194 682.6 733 56.3
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 7.6e-194 681.4 728 53.0
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 3.8e-193 679.1 742 50.3
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 8.4e-193 677.9 719 52.9
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 1.4e-192 677.2 674 56.1
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.4e-192 677.2 735 51.8
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.2e-192 676.0 743 53.2
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 7.1e-192 674.9 729 53.6
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 7.1e-192 674.9 738 50.7
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 1.6e-191 673.7 748 51.6
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 6.0e-191 671.8 739 52.0
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 1.7e-190 670.2 755 51.0
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 3.0e-190 669.5 738 52.2
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 5.1e-190 668.7 733 56.3
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.1e-189 667.5 738 53.3
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 4.3e-189 665.6 718 53.8
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.1e-188 663.3 740 52.4
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 4.8e-188 662.1 740 52.3
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 6.2e-188 661.8 735 53.1
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 1.4e-187 660.6 695 53.5
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 6.9e-187 658.3 746 52.5
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 9.0e-187 657.9 757 50.1
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 2.0e-186 656.8 708 52.5
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 2.6e-186 656.4 743 51.5
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 4.5e-186 655.6 714 52.5
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.7e-185 653.7 740 53.5
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 4.9e-185 652.1 746 51.9
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.9e-185 652.1 722 51.4
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 3.2e-184 649.4 722 51.9
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 9.3e-184 647.9 704 52.1
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 2.7e-183 646.4 758 49.3
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 1.8e-182 643.7 675 53.5
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 6.7e-182 641.7 746 52.0
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 2.5e-181 639.8 759 49.5
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 5.6e-181 638.6 752 49.7
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 9.6e-181 637.9 747 49.4
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 2.1e-180 636.7 747 49.3
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 2.1e-180 636.7 732 52.2
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 8.1e-180 634.8 754 48.9
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 1.1e-179 634.4 746 49.2
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 9.0e-179 631.3 613 58.2
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 2.0e-178 630.2 732 49.3
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 5.8e-178 628.6 732 51.5
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 1.3e-177 627.5 732 50.7
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 2.9e-177 626.3 748 48.3
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 2.9e-177 626.3 732 50.5
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.4e-176 624.0 718 50.8
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 9.3e-176 621.3 718 50.8
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 2.3e-174 616.7 734 47.8
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 5.1e-174 615.5 733 50.1
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.5e-173 614.0 747 47.4
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.3e-172 610.9 666 52.6
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 1.4e-171 607.4 756 48.8
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 5.3e-171 605.5 756 48.7
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 1.2e-170 604.4 755 47.5
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 1.0e-169 601.3 690 49.9
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 1.7e-169 600.5 725 47.9
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.4e-168 597.4 751 50.1
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 5.5e-168 595.5 710 50.8
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.2e-167 594.3 734 47.3
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 1.8e-166 590.5 737 49.8
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 1.1e-165 587.8 725 47.0
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 2.5e-165 586.6 711 50.2
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 2.5e-165 586.6 775 46.5
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 5.7e-165 585.5 728 48.5
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 5.7e-165 585.5 708 49.0
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 4.8e-164 582.4 712 50.4
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 8.2e-164 581.6 721 49.2
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.4e-163 580.9 757 47.0
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 2.4e-163 580.1 755 47.0
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 5.3e-163 578.9 731 49.9
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 9.0e-163 578.2 702 49.1
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 1.2e-162 577.8 739 47.1
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 1.5e-162 577.4 739 47.1
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.9e-162 575.5 713 46.0
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 8.5e-161 571.6 647 52.1
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.1e-160 571.2 653 52.4
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 3.3e-157 559.7 746 46.4
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 1.7e-156 557.4 716 47.2
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 2.8e-156 556.6 680 48.4
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.0e-154 550.4 730 46.3
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 6.5e-153 545.4 691 47.6
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 6.5e-153 545.4 723 46.1
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 3.0e-150 536.6 731 45.0
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 6.7e-150 535.4 727 45.0
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 6.3e-148 528.9 672 47.6
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 8.2e-148 528.5 720 44.0
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.5e-146 522.7 576 51.6
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 5.9e-146 522.3 497 60.0
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 5.0e-145 519.2 736 43.5
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 1.5e-144 517.7 743 45.8
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 2.5e-144 516.9 754 42.6
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 1.0e-142 511.5 723 47.4
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 2.0e-141 507.3 702 44.3
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 3.7e-140 503.1 758 42.7
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 7.7e-138 495.4 713 47.0
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 3.8e-137 493.0 728 42.6
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 1.7e-132 477.6 745 42.6
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 4.5e-130 469.5 574 46.2
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 6.5e-129 465.7 779 39.7
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 2.6e-117 427.2 722 39.9
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 2.0e-114 417.5 563 45.8
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 3.6e-111 406.8 578 44.1
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 2.0e-109 401.0 723 36.7
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.9e-108 397.1 488 48.8
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.5e-96 357.5 343 57.4
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.8e-95 354.0 728 36.0
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.4e-94 351.7 712 37.6
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 8.9e-94 349.0 733 35.3
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.5e-88 331.6 699 33.8
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 5.6e-88 329.7 711 33.6
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 3.1e-86 323.9 730 33.6
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 4.4e-85 320.1 716 34.2
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 7.6e-85 319.3 805 32.5
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.2e-82 312.0 760 32.8
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 7.8e-82 309.3 715 34.1
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 2.9e-76 290.8 298 56.0
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 3.8e-76 290.4 212 69.3
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 5.4e-75 286.6 213 70.4
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 4.6e-74 283.5 690 32.5
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 8.7e-73 279.3 738 31.7
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 9.3e-67 259.2 556 33.8
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 1.3e-65 255.4 669 32.0
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 3.9e-65 253.8 740 30.4
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 9.6e-64 249.2 327 43.4
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 1.2e-61 242.3 584 32.4
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.2e-59 234.2 575 32.9
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 3.5e-50 204.1 340 35.6
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 7.7e-45 186.4 330 34.5
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.4e-35 152.9 268 40.3
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.4e-27 126.3 104 61.5
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.7e-26 124.8 116 56.9
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 5.2e-25 120.6 184 41.3
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.3e-23 115.9 67 83.6
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 4.5e-21 107.5 70 71.4
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 6.8e-17 93.6 109 53.2
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 4.5e-13 80.9 105 43.8
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 2.9e-12 78.2 52 73.1
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 5.0e-12 77.4 115 42.6
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.1e-10 72.0 54 63.0
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 1.7e-07 62.4 48 62.5


User provided reference genes

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