Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 3.1e-255 884.8 492 100.0
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 1.1e-196 690.3 543 76.6
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.3e-149 533.9 508 65.0
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 3.1e-130 469.5 312 87.8
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 9.0e-98 361.7 517 45.5
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 6.5e-96 355.5 517 45.3
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.6e-94 350.9 479 48.6
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.1e-93 345.9 563 42.6
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 6.7e-93 345.5 517 44.3
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 2.5e-92 343.6 482 45.2
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.3e-92 342.8 563 42.5
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 5.7e-92 342.4 482 45.2
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 7.1e-87 325.5 462 45.5
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.3e-85 321.2 483 43.9
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 4.3e-84 316.2 439 45.3
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 3.6e-78 296.6 492 40.9
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 2.2e-75 287.3 495 39.2
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.2e-75 287.3 501 41.1
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 8.2e-75 285.4 514 37.7
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 5.3e-74 282.7 429 41.5
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 7.7e-73 278.9 442 40.3
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 4.2e-71 273.1 470 37.7
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 6.1e-70 269.2 489 38.9
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 7.9e-70 268.9 493 37.1
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 7.9e-70 268.9 435 38.9
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.8e-69 267.7 484 39.7
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 6.7e-69 265.8 433 39.7
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.1e-68 265.0 438 38.8
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 6.3e-67 259.2 353 44.8
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 9.1e-66 255.4 519 36.2
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 1.7e-64 251.1 507 36.7
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 9.4e-63 245.4 491 35.8
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 2.1e-62 244.2 495 36.2
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 3.6e-62 243.4 512 36.1
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 8.8e-61 238.8 494 36.6
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 4.8e-59 233.0 485 36.3
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 6.3e-59 232.6 514 35.4
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 3.1e-58 230.3 514 33.9
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 3.5e-57 226.9 492 36.2
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 7.7e-57 225.7 504 35.3
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 7.7e-57 225.7 557 32.5
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 2.9e-56 223.8 542 31.4
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 3.8e-56 223.4 562 32.4
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 8.5e-56 222.2 428 36.7
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 2.5e-55 220.7 234 49.6
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 3.2e-55 220.3 583 34.8
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 4.2e-55 219.9 508 33.1
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 4.0e-53 213.4 522 32.4
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 6.8e-53 212.6 525 31.4
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 8.8e-53 212.2 426 39.7
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 2.0e-52 211.1 583 30.5
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 5.7e-52 209.5 433 35.1
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 2.8e-51 207.2 426 33.1
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 6.3e-51 206.1 470 35.5
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 4.1e-50 203.4 426 32.4
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 7.0e-50 202.6 441 32.0
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 1.3e-48 198.4 253 41.9
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 1.7e-48 198.0 253 46.2
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 2.9e-48 197.2 253 46.2
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.9e-48 197.2 439 31.4
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 2.9e-48 197.2 477 33.1
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 2.7e-46 190.7 525 31.4
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 4.7e-46 189.9 441 32.4
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.0e-45 188.7 492 31.3
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 5.2e-45 186.4 485 31.3
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 7.0e-42 176.0 512 38.7
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.7e-41 174.1 509 29.9
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 2.7e-41 174.1 593 29.5
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 2.3e-40 171.0 396 34.6
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 2.5e-39 167.5 430 33.5
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 1.6e-38 164.9 569 29.0
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 2.1e-38 164.5 579 33.9
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 2.8e-38 164.1 587 29.1
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 6.1e-38 162.9 220 42.3
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 2.3e-37 161.0 235 41.3
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 2.3e-37 161.0 433 31.2
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 5.2e-37 159.8 224 41.1
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 6.8e-37 159.5 555 33.2
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 2.0e-36 157.9 463 30.5
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 1.7e-35 154.8 598 32.8
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.7e-35 154.8 442 29.9
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 2.9e-35 154.1 252 39.7
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 2.9e-35 154.1 255 39.2
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 4.9e-35 153.3 565 33.6
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 2.4e-34 151.0 224 39.7
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 2.4e-34 151.0 589 27.8
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.6e-33 148.3 232 37.1
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 2.0e-33 147.9 589 28.0
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 2.0e-33 147.9 251 35.1
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 1.3e-32 145.2 511 26.2
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 2.5e-31 141.0 554 33.6
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 7.3e-31 139.4 487 29.0
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 9.5e-31 139.0 112 57.1
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 1.6e-30 138.3 232 36.6
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 1.6e-30 138.3 232 36.6
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 8.0e-30 136.0 257 35.0
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.4e-29 135.2 545 27.2
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.4e-29 135.2 489 27.0
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.2e-28 132.1 153 41.8
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.5e-28 131.7 412 28.9
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.7e-27 128.3 510 27.8
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 4.9e-27 126.7 537 25.7
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 1.4e-26 125.2 523 28.3
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.9e-26 124.8 250 33.6
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 5.4e-26 123.2 632 29.1
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 9.2e-26 122.5 417 28.3
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 1.6e-25 121.7 248 31.0
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.6e-25 121.7 242 33.9
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.6e-25 121.7 510 27.5
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 2.3e-24 117.9 488 27.3
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 3.0e-24 117.5 349 28.9
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 2.1e-22 111.3 248 31.9
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.8e-21 108.2 378 28.3
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 2.6e-20 104.4 62 87.1
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 2.1e-17 94.7 253 30.8
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 7.8e-17 92.8 107 43.9
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 1.0e-16 92.4 399 27.1
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 4.0e-13 80.5 106 41.5
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 5.2e-13 80.1 198 36.4
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.1e-10 70.5 330 24.5
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 2.7e-09 67.8 189 33.9
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 3.0e-08 64.3 195 31.8
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 3.0e-08 64.3 195 31.8
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 1.5e-07 62.0 94 37.2
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.5e-07 61.2 296 25.7
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.5e-07 61.2 296 25.7


User provided reference genes

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