Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1083600 Malus domestica HOM05D006917 ORTHO05D008297 3.1e-34 147.9 74 100.0
MD09G1093800 Malus domestica HOM05D006917 ORTHO05D008297 5.4e-31 137.1 74 91.9
Prupe.3G231600 Prunus persica HOM05D006917 ORTHO05D008297 3.1e-26 121.3 74 78.4
CANSAT64G1157 Cannabis sativa HOM05D006917 ORTHO05D008297 6.9e-26 120.2 74 75.7
Thecc.02G172300 Theobroma cacao HOM05D006917 ORTHO05D008297 5.8e-25 117.1 76 77.6
Cfa014546 Carpinus fangiana HOM05D006917 ORTHO05D008297 9.9e-25 116.3 76 75.0
Haze_13090 Corylus avellana HOM05D006917 ORTHO05D008297 9.9e-25 116.3 76 75.0
RcHm_v2.0_Chr2g0161911 Rosa chinensis HOM05D006917 ORTHO05D008297 2.2e-24 115.2 74 71.6
Gohir.D13G065000 Gossypium hirsutum HOM05D006917 ORTHO05D008297 1.1e-23 112.8 76 73.7
COL.COLO4_13687 Corchorus olitorius HOM05D006917 ORTHO05D008297 1.9e-23 112.1 76 73.7
Gorai.013G073800 Gossypium raimondii HOM05D006917 ORTHO05D008297 1.9e-23 112.1 76 73.7
Gohir.A13G056900 Gossypium hirsutum HOM05D006917 ORTHO05D008297 2.4e-23 111.7 76 73.7
Duzib132G0607 Durio zibethinus HOM05D006917 ORTHO05D008297 3.2e-23 111.3 76 72.4
QL08p037351 Quercus lobata HOM05D006917 ORTHO05D008297 4.2e-23 110.9 75 73.3
Eucgr.D00334 Eucalyptus grandis HOM05D006917 ORTHO05D008297 5.4e-23 110.5 75 74.7
FAN05G2664 Fragaria x ananassa HOM05D006917 ORTHO05D008297 7.1e-23 110.2 74 70.3
Atru.chr6.3069 Acer truncatum HOM05D006917 ORTHO05D008297 9.3e-23 109.8 76 68.4
FAN02G4118 Fragaria x ananassa HOM05D006917 ORTHO05D008297 2.1e-22 108.6 74 68.9
Ciclev10015637m.g Citrus clementina HOM05D006917 ORTHO05D008297 2.7e-22 108.2 76 67.1
FvH4_6g44760 Fragaria vesca HOM05D006917 ORTHO05D008297 2.7e-22 108.2 74 67.6
FAN14G5902 Fragaria x ananassa HOM05D006917 ORTHO05D008297 2.7e-22 108.2 74 67.6
FAN09G3443 Fragaria x ananassa HOM05D006917 ORTHO05D008297 3.5e-22 107.8 74 68.9
Cpa.g.sc53.106 Carica papaya HOM05D006917 ORTHO05D008297 1.3e-21 105.9 74 70.3
Manes.13G151300 Manihot esculenta HOM05D006917 ORTHO05D008297 1.3e-21 105.9 76 69.7
GSVIVG01030015001 Vitis vinifera HOM05D006917 ORTHO05D008297 1.7e-21 105.5 76 67.1
CiPaw.03G170000 Carya illinoinensis HOM05D006917 ORTHO05D008297 5.1e-21 104.0 76 67.1
ClCG01G000980 Citrullus lanatus HOM05D006917 ORTHO05D008297 2.5e-20 101.7 79 64.6
TWI36G0541 Tripterygium wilfordii HOM05D006917 ORTHO05D008297 2.5e-20 101.7 76 61.8
MSTRG.18638 Avicennia marina HOM05D006917 ORTHO05D008297 3.3e-20 101.3 74 66.2
Lalb_Chr19g0135451 Lupinus albus HOM05D006917 ORTHO05D008297 5.6e-20 100.5 74 67.6
Ah.04g154320 Amaranthus hybridus HOM05D006917 ORTHO05D008297 7.3e-20 100.1 76 61.8
PGR042G0968 Punica granatum HOM05D006917 ORTHO05D008297 9.6e-20 99.8 77 64.9
DCAR_009726 Daucus carota HOM05D006917 ORTHO05D008297 1.3e-19 99.4 75 66.7
Aa31LG2G22070 Aethionema arabicum HOM05D006917 ORTHO05D008297 1.6e-19 99.0 76 61.8
BolC7t46080H Brassica oleracea HOM05D006917 ORTHO05D008297 1.6e-19 99.0 75 65.3
Sabra13G0118400 Salix brachista HOM05D006917 ORTHO05D008297 2.1e-19 98.6 78 65.4
AT4G28210 Arabidopsis thaliana HOM05D006917 ORTHO05D008297 2.8e-19 98.2 74 64.9
BcaNung01588 Brassica carinata HOM05D006917 ORTHO05D008297 2.8e-19 98.2 74 64.9
Lalb_Chr03g0029201 Lupinus albus HOM05D006917 ORTHO05D008297 3.6e-19 97.8 74 64.9
Cc05_g06310 Coffea canephora HOM05D006917 ORTHO05D008297 6.2e-19 97.1 75 61.3
Hma1.2p1_0565F.1_g179500 Hydrangea macrophylla HOM05D006917 ORTHO05D008297 6.2e-19 97.1 76 67.1
CSS0047204 Camellia sinensis var. sinensis HOM05D006917 ORTHO05D008297 8.1e-19 96.7 77 63.6
AUR62044684 Chenopodium quinoa HOM05D006917 ORTHO05D008297 8.1e-19 96.7 76 60.5
EL10Ac9g22343 Beta vulgaris HOM05D006917 ORTHO05D008297 1.1e-18 96.3 76 59.2
AL7G24390 Arabidopsis lyrata HOM05D006917 ORTHO05D008297 1.4e-18 95.9 74 64.9
BcaC06g32638 Brassica carinata HOM05D006917 ORTHO05D008297 1.4e-18 95.9 75 64.0
Potri.013G146900 Populus trichocarpa HOM05D006917 ORTHO05D008297 1.4e-18 95.9 78 61.5
Sp7g26170 Schrenkiella parvula HOM05D006917 ORTHO05D008297 1.4e-18 95.9 74 64.9
A01p19630 Brassica napus HOM05D006917 ORTHO05D008297 1.8e-18 95.5 74 60.8
Carub.0007s1255 Capsella rubella HOM05D006917 ORTHO05D008297 1.8e-18 95.5 74 64.9
Medtr4g046023 Medicago truncatula HOM05D006917 ORTHO05D008297 1.8e-18 95.5 76 61.8
SalBow7G0082 Salvia bowleyana HOM05D006917 ORTHO05D008297 2.4e-18 95.1 75 60.0
Sed0009072 Sechium edule HOM05D006917 ORTHO05D008297 2.4e-18 95.1 75 62.7
Thhalv10025608m.g Eutrema salsugineum HOM05D006917 ORTHO05D008297 3.1e-18 94.7 74 63.5
Lj3g0010136 Lotus japonicus HOM05D006917 ORTHO05D008297 3.1e-18 94.7 76 61.8
Nn1g03886 Nelumbo nucifera HOM05D006917 ORTHO05D008297 3.1e-18 94.7 77 63.6
THA.LOC104807893 Tarenaya hassleriana HOM05D006917 ORTHO05D008297 3.1e-18 94.7 76 59.2
Dinv15489 Davidia involucrata HOM05D006917 ORTHO05D008297 4.0e-18 94.4 76 60.5
THA.LOC104825523 Tarenaya hassleriana HOM05D006917 ORTHO05D008297 4.0e-18 94.4 76 59.2
TPR.G21667 Trifolium pratense HOM05D006917 ORTHO05D008297 5.3e-18 94.0 76 61.8
BcaC09g50505 Brassica carinata HOM05D006917 ORTHO05D008297 9.0e-18 93.2 74 60.8
PGSC0003DMG401021671 Solanum tuberosum HOM05D006917 ORTHO05D008297 9.0e-18 93.2 75 61.3
CSS0012077 Camellia sinensis var. sinensis HOM05D006917 ORTHO05D008297 1.2e-17 92.8 77 62.3
MELO3C005833.2 Cucumis melo HOM05D006917 ORTHO05D008297 1.2e-17 92.8 77 62.3
Nitab4.5_0000635g0150 Nicotiana tabacum HOM05D006917 ORTHO05D008297 1.2e-17 92.8 75 58.7
Peaxi162Scf00608g00317 Petunia axillaris HOM05D006917 ORTHO05D008297 1.2e-17 92.8 75 60.0
Solyc10g008600.3 Solanum lycopersicum HOM05D006917 ORTHO05D008297 1.2e-17 92.8 75 61.3
Ca_20697_v3 Cicer arietinum L. HOM05D006917 ORTHO05D008297 1.5e-17 92.4 76 60.5
Phvul.011G111800 Phaseolus vulgaris HOM05D006917 ORTHO05D008297 1.5e-17 92.4 76 61.8
Sopen10g004420 Solanum pennellii HOM05D006917 ORTHO05D008297 1.5e-17 92.4 75 61.3
CARHR235920 Cardamine hirsuta HOM05D006917 ORTHO05D008297 2.0e-17 92.0 74 60.8
Nitab4.5_0003195g0010 Nicotiana tabacum HOM05D006917 ORTHO05D008297 2.0e-17 92.0 75 58.7
HPP92_002192 Vanilla planifolia HOM05D006917 ORTHO05D008297 2.0e-17 92.0 75 64.0
AUR62037382 Chenopodium quinoa HOM05D006917 ORTHO05D008297 2.6e-17 91.7 76 57.9
Psat7g195960 Pisum sativum HOM05D006917 ORTHO05D008297 4.5e-17 90.9 76 60.5
BraA01t01896Z Brassica rapa HOM05D006917 ORTHO05D008297 5.8e-17 90.5 76 59.2
PSO832G2257 Papaver somniferum HOM05D006917 ORTHO05D008297 5.8e-17 90.5 79 58.2
VMungo1127G0570 Vigna mungo HOM05D006917 ORTHO05D008297 5.8e-17 90.5 76 60.5
CsaV3_5G001130 Cucumis sativus L. HOM05D006917 ORTHO05D008297 7.6e-17 90.1 77 61.0
Aqoxy3G03605 Aquilegia oxysepala HOM05D006917 ORTHO05D008297 9.9e-17 89.7 76 59.2
Migut.M00331 Erythranthe guttata HOM05D006917 ORTHO05D008297 1.3e-16 89.4 78 60.3
PSO210G6334 Papaver somniferum HOM05D006917 ORTHO05D008297 1.3e-16 89.4 79 57.0
C07p56030 Brassica napus HOM05D006917 ORTHO05D008297 1.7e-16 89.0 75 60.0
Lj8P117T42 Lonicera japonica HOM05D006917 ORTHO05D008297 1.7e-16 89.0 74 59.5
A03p57910 Brassica napus HOM05D006917 ORTHO05D008297 2.9e-16 88.2 75 60.0
SGA_v2.0_scaffold70G23465 Striga asiatica HOM05D006917 ORTHO05D008297 2.9e-16 88.2 74 58.1
Actinidia30487 Actinidia chinensis HOM05D006917 ORTHO05D008297 6.4e-16 87.0 76 57.9
BraA03t14855Z Brassica rapa HOM05D006917 ORTHO05D008297 6.4e-16 87.0 75 60.0
HanXRQChr06g0170991 Helianthus annuus HOM05D006917 ORTHO05D008297 6.4e-16 87.0 78 52.6
arahy.Tifrunner.gnm1.ann1.43ZBCD Arachis hypogaea HOM05D006917 ORTHO05D008297 8.4e-16 86.7 76 53.9
arahy.Tifrunner.gnm1.ann1.RY5XZD Arachis hypogaea HOM05D006917 ORTHO05D008297 1.1e-15 86.3 76 53.9
MBI19_g29221_MAGBIO Magnolia biondii HOM05D006917 ORTHO05D008297 1.1e-15 86.3 74 59.5
Hund08056 Selenicereus undatus HOM05D006917 ORTHO05D008297 3.2e-15 84.7 76 56.6
unitig_746.g26713 Utricularia gibba HOM05D006917 ORTHO05D008297 5.4e-15 84.0 74 50.0
Glyma.06G298100 Glycine max HOM05D006917 ORTHO05D008297 7.1e-15 83.6 73 56.2
Lsat_1_v5_gn_3_39800 Lactuca sativa HOM05D006917 ORTHO05D008297 7.1e-15 83.6 78 52.6
Glyma.12G107100 Glycine max HOM05D006917 ORTHO05D008297 1.6e-14 82.4 73 54.8
ECA246G1823 Erigeron canadensis HOM05D006917 ORTHO05D008297 3.5e-14 81.3 80 47.5
arahy.Tifrunner.gnm1.ann1.29DNDL Arachis hypogaea HOM05D006917 ORTHO05D008297 6.0e-14 80.5 76 51.3
Sc21g0002460 Simmondsia chinensis HOM05D006917 ORTHO05D008297 6.0e-14 80.5 76 55.3
CDE12G0159 Ceratophyllum demersum HOM05D006917 ORTHO05D008297 1.6e-11 72.4 74 50.0
ATR0693G234 Amborella trichopoda HOM05D006917 ORTHO05D008297 3.4e-09 64.7 73 47.9
C01p24650 Brassica napus HOM05D006917 ORTHO05D008297 1.2e-06 56.2 55 50.9
BolC1t02415H Brassica oleracea HOM05D006917 ORTHO05D008297 1.2e-06 56.2 55 50.9


User provided reference genes

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