Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1083500 Malus domestica HOM05D006917 ORTHO05D008297 8.3e-123 443.7 227 100.0
MD09G1093800 Malus domestica HOM05D006917 ORTHO05D008297 7.1e-106 387.5 218 91.7
Prupe.3G231600 Prunus persica HOM05D006917 ORTHO05D008297 3.8e-91 338.6 218 80.7
RcHm_v2.0_Chr2g0161911 Rosa chinensis HOM05D006917 ORTHO05D008297 4.9e-83 311.6 218 73.9
FAN02G4118 Fragaria x ananassa HOM05D006917 ORTHO05D008297 3.4e-76 288.9 218 68.8
FAN09G3443 Fragaria x ananassa HOM05D006917 ORTHO05D008297 4.5e-76 288.5 218 68.8
FvH4_6g44760 Fragaria vesca HOM05D006917 ORTHO05D008297 5.8e-76 288.1 218 68.8
FAN14G5902 Fragaria x ananassa HOM05D006917 ORTHO05D008297 7.6e-76 287.7 218 68.8
Haze_13090 Corylus avellana HOM05D006917 ORTHO05D008297 4.9e-75 285.0 221 69.7
Cfa014546 Carpinus fangiana HOM05D006917 ORTHO05D008297 2.5e-74 282.7 218 69.3
CiPaw.03G170000 Carya illinoinensis HOM05D006917 ORTHO05D008297 8.7e-72 274.2 221 67.0
FAN05G2664 Fragaria x ananassa HOM05D006917 ORTHO05D008297 1.6e-70 270.0 218 66.5
QL08p037351 Quercus lobata HOM05D006917 ORTHO05D008297 4.6e-65 251.9 226 62.4
CANSAT64G1157 Cannabis sativa HOM05D006917 ORTHO05D008297 7.4e-63 244.6 222 60.4
Dinv15489 Davidia involucrata HOM05D006917 ORTHO05D008297 3.8e-59 232.3 233 55.4
Gohir.A13G056900 Gossypium hirsutum HOM05D006917 ORTHO05D008297 4.6e-57 225.3 223 59.2
Gorai.013G073800 Gossypium raimondii HOM05D006917 ORTHO05D008297 7.9e-57 224.6 223 58.7
COL.COLO4_13687 Corchorus olitorius HOM05D006917 ORTHO05D008297 1.4e-56 223.8 222 57.2
Duzib132G0607 Durio zibethinus HOM05D006917 ORTHO05D008297 1.1e-55 220.7 221 57.5
Atru.chr6.3069 Acer truncatum HOM05D006917 ORTHO05D008297 2.5e-55 219.5 209 57.9
PGR042G0968 Punica granatum HOM05D006917 ORTHO05D008297 3.7e-54 215.7 155 72.3
ClCG01G000980 Citrullus lanatus HOM05D006917 ORTHO05D008297 8.2e-54 214.5 200 60.0
Hma1.2p1_0565F.1_g179500 Hydrangea macrophylla HOM05D006917 ORTHO05D008297 2.4e-53 213.0 220 55.5
Thecc.02G172300 Theobroma cacao HOM05D006917 ORTHO05D008297 2.4e-53 213.0 223 56.5
Cpa.g.sc53.106 Carica papaya HOM05D006917 ORTHO05D008297 3.1e-53 212.6 231 55.8
Eucgr.D00334 Eucalyptus grandis HOM05D006917 ORTHO05D008297 5.3e-53 211.8 138 73.9
TAR629G2913 Trochodendron aralioides HOM05D006917 ORTHO05D008297 5.3e-53 211.8 229 55.9
TWI36G0541 Tripterygium wilfordii HOM05D006917 ORTHO05D008297 9.1e-53 211.1 204 54.4
Manes.13G151300 Manihot esculenta HOM05D006917 ORTHO05D008297 1.7e-51 206.8 214 52.8
THA.LOC104825523 Tarenaya hassleriana HOM05D006917 ORTHO05D008297 2.9e-51 206.1 143 70.6
THA.LOC104807893 Tarenaya hassleriana HOM05D006917 ORTHO05D008297 3.8e-51 205.7 188 57.4
Sed0009072 Sechium edule HOM05D006917 ORTHO05D008297 5.0e-51 205.3 203 56.2
CSS0047204 Camellia sinensis var. sinensis HOM05D006917 ORTHO05D008297 1.9e-50 203.4 233 51.1
Lj3g0010136 Lotus japonicus HOM05D006917 ORTHO05D008297 1.9e-50 203.4 192 55.2
Peaxi162Scf00608g00317 Petunia axillaris HOM05D006917 ORTHO05D008297 7.2e-50 201.4 210 53.8
CSS0012077 Camellia sinensis var. sinensis HOM05D006917 ORTHO05D008297 1.2e-49 200.7 233 50.6
Potri.013G146900 Populus trichocarpa HOM05D006917 ORTHO05D008297 1.6e-49 200.3 227 52.0
BcaC06g32638 Brassica carinata HOM05D006917 ORTHO05D008297 4.7e-49 198.7 218 51.8
Sc21g0002460 Simmondsia chinensis HOM05D006917 ORTHO05D008297 6.1e-49 198.4 203 55.2
A03p57910 Brassica napus HOM05D006917 ORTHO05D008297 7.9e-49 198.0 225 49.3
MELO3C005833.2 Cucumis melo HOM05D006917 ORTHO05D008297 7.9e-49 198.0 219 53.9
C07p56030 Brassica napus HOM05D006917 ORTHO05D008297 1.0e-48 197.6 218 51.4
Solyc10g008600.3 Solanum lycopersicum HOM05D006917 ORTHO05D008297 1.4e-48 197.2 226 49.6
PGSC0003DMG401021671 Solanum tuberosum HOM05D006917 ORTHO05D008297 1.4e-48 197.2 226 49.6
BraA03t14855Z Brassica rapa HOM05D006917 ORTHO05D008297 1.8e-48 196.8 206 54.4
HanXRQChr06g0170991 Helianthus annuus HOM05D006917 ORTHO05D008297 3.9e-48 195.7 207 51.2
Lalb_Chr03g0029201 Lupinus albus HOM05D006917 ORTHO05D008297 3.9e-48 195.7 219 50.7
GSVIVG01030015001 Vitis vinifera HOM05D006917 ORTHO05D008297 3.9e-48 195.7 125 76.0
Ciclev10015637m.g Citrus clementina HOM05D006917 ORTHO05D008297 5.1e-48 195.3 137 69.3
Sopen10g004420 Solanum pennellii HOM05D006917 ORTHO05D008297 6.7e-48 194.9 226 48.7
Carub.0007s1255 Capsella rubella HOM05D006917 ORTHO05D008297 8.8e-48 194.5 147 66.7
VMungo1127G0570 Vigna mungo HOM05D006917 ORTHO05D008297 8.8e-48 194.5 220 50.9
Gohir.D13G065000 Gossypium hirsutum HOM05D006917 ORTHO05D008297 1.1e-47 194.1 125 76.0
Nn1g03886 Nelumbo nucifera HOM05D006917 ORTHO05D008297 1.5e-47 193.7 164 61.6
BcaNung01588 Brassica carinata HOM05D006917 ORTHO05D008297 2.0e-47 193.4 198 52.0
BolC7t46080H Brassica oleracea HOM05D006917 ORTHO05D008297 2.0e-47 193.4 142 66.2
CARHR235920 Cardamine hirsuta HOM05D006917 ORTHO05D008297 4.4e-47 192.2 142 67.6
C01p24650 Brassica napus HOM05D006917 ORTHO05D008297 7.4e-47 191.4 147 66.0
Sabra13G0118400 Salix brachista HOM05D006917 ORTHO05D008297 1.3e-46 190.7 226 51.8
AL7G24390 Arabidopsis lyrata HOM05D006917 ORTHO05D008297 3.7e-46 189.1 147 64.6
CsaV3_5G001130 Cucumis sativus L. HOM05D006917 ORTHO05D008297 3.7e-46 189.1 218 54.1
MSTRG.18638 Avicennia marina HOM05D006917 ORTHO05D008297 8.2e-46 188.0 231 48.5
AT4G28210 Arabidopsis thaliana HOM05D006917 ORTHO05D008297 1.4e-45 187.2 137 67.2
Lsat_1_v5_gn_3_39800 Lactuca sativa HOM05D006917 ORTHO05D008297 1.4e-45 187.2 148 62.2
PSO832G2257 Papaver somniferum HOM05D006917 ORTHO05D008297 1.8e-45 186.8 176 58.0
Phvul.011G111800 Phaseolus vulgaris HOM05D006917 ORTHO05D008297 2.4e-45 186.4 220 49.5
Sp7g26170 Schrenkiella parvula HOM05D006917 ORTHO05D008297 3.1e-45 186.0 157 60.5
Thhalv10025608m.g Eutrema salsugineum HOM05D006917 ORTHO05D008297 7.0e-45 184.9 156 62.2
Lalb_Chr19g0135451 Lupinus albus HOM05D006917 ORTHO05D008297 7.0e-45 184.9 220 47.3
MBI19_g29221_MAGBIO Magnolia biondii HOM05D006917 ORTHO05D008297 7.0e-45 184.9 132 68.2
A01p19630 Brassica napus HOM05D006917 ORTHO05D008297 1.2e-44 184.1 142 64.1
PGSC0003DMG400029584 Solanum tuberosum HOM05D006917 ORTHO05D008297 1.5e-44 183.7 139 64.7
ECA246G1823 Erigeron canadensis HOM05D006917 ORTHO05D008297 3.5e-44 182.6 131 66.4
PSO210G6334 Papaver somniferum HOM05D006917 ORTHO05D008297 3.5e-44 182.6 142 64.1
EL10Ac9g22343 Beta vulgaris HOM05D006917 ORTHO05D008297 1.0e-43 181.0 145 62.8
Migut.M00331 Erythranthe guttata HOM05D006917 ORTHO05D008297 1.3e-43 180.6 221 46.6
Cc05_g06310 Coffea canephora HOM05D006917 ORTHO05D008297 2.2e-43 179.9 125 68.0
Glyma.12G107100 Glycine max HOM05D006917 ORTHO05D008297 2.9e-43 179.5 214 48.6
Ah.04g154320 Amaranthus hybridus HOM05D006917 ORTHO05D008297 5.0e-43 178.7 153 62.7
arahy.Tifrunner.gnm1.ann1.43ZBCD Arachis hypogaea HOM05D006917 ORTHO05D008297 5.0e-43 178.7 137 64.2
arahy.Tifrunner.gnm1.ann1.RY5XZD Arachis hypogaea HOM05D006917 ORTHO05D008297 5.0e-43 178.7 137 64.2
Aqoxy3G03605 Aquilegia oxysepala HOM05D006917 ORTHO05D008297 6.5e-43 178.3 186 51.1
BraA01t01896Z Brassica rapa HOM05D006917 ORTHO05D008297 8.5e-43 177.9 157 58.6
HPP92_002192 Vanilla planifolia HOM05D006917 ORTHO05D008297 1.1e-42 177.6 151 59.6
AUR62044684 Chenopodium quinoa HOM05D006917 ORTHO05D008297 1.9e-42 176.8 136 62.5
Glyma.06G298100 Glycine max HOM05D006917 ORTHO05D008297 7.2e-42 174.9 223 47.5
Aa31LG2G22070 Aethionema arabicum HOM05D006917 ORTHO05D008297 9.4e-42 174.5 219 48.4
DCAR_009726 Daucus carota HOM05D006917 ORTHO05D008297 3.6e-41 172.6 223 46.6
Psat7g195960 Pisum sativum HOM05D006917 ORTHO05D008297 1.0e-40 171.0 218 46.3
SalBow7G0082 Salvia bowleyana HOM05D006917 ORTHO05D008297 1.4e-40 170.6 273 41.8
Actinidia30487 Actinidia chinensis HOM05D006917 ORTHO05D008297 4.0e-40 169.1 141 61.0
AUR62037382 Chenopodium quinoa HOM05D006917 ORTHO05D008297 4.0e-40 169.1 145 58.6
SGA_v2.0_scaffold70G23465 Striga asiatica HOM05D006917 ORTHO05D008297 6.7e-40 168.3 211 45.0
unitig_746.g26713 Utricularia gibba HOM05D006917 ORTHO05D008297 8.8e-40 167.9 216 48.1
CDE12G0159 Ceratophyllum demersum HOM05D006917 ORTHO05D008297 1.1e-39 167.5 139 56.8
Ca_20697_v3 Cicer arietinum L. HOM05D006917 ORTHO05D008297 1.1e-39 167.5 139 57.6
TPR.G21667 Trifolium pratense HOM05D006917 ORTHO05D008297 1.5e-39 167.2 213 48.8
BolC1t02415H Brassica oleracea HOM05D006917 ORTHO05D008297 1.7e-38 163.7 147 59.9
Hund08056 Selenicereus undatus HOM05D006917 ORTHO05D008297 5.9e-36 155.2 210 46.7
BcaC09g50505 Brassica carinata HOM05D006917 ORTHO05D008297 7.7e-36 154.8 146 56.2
Medtr4g046023 Medicago truncatula HOM05D006917 ORTHO05D008297 1.9e-34 150.2 211 46.0
Nitab4.5_0003195g0010 Nicotiana tabacum HOM05D006917 ORTHO05D008297 1.8e-29 133.7 101 66.3
Nitab4.5_0000635g0150 Nicotiana tabacum HOM05D006917 ORTHO05D008297 4.1e-29 132.5 225 40.9
Lj8P117T42 Lonicera japonica HOM05D006917 ORTHO05D008297 1.2e-25 120.9 102 59.8
arahy.Tifrunner.gnm1.ann1.C6FW5S Arachis hypogaea HOM05D006917 ORTHO05D008297 1.7e-22 110.5 101 56.4
ATR0693G234 Amborella trichopoda HOM05D006917 ORTHO05D008297 2.0e-20 103.6 104 52.9
Oeu039864.1 Olea europaea HOM05D006917 ORTHO05D008297 2.1e-09 67.0 76 50.0
Cpa.g.sc609.4 Carica papaya HOM05D006917 ORTHO05D008297 5.2e-08 62.4 86 43.0
Aqoxy3G03603 Aquilegia oxysepala HOM05D006917 ORTHO05D008297 1.3e-06 57.8 79 46.8
ATR0693G306 Amborella trichopoda HOM05D006917 ORTHO05D008297 2.2e-06 57.0 31 77.4


User provided reference genes

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