Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1501.9 793 100.0
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1440.2 793 94.8
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1426.8 794 95.3
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1361.7 794 89.8
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1329.7 794 88.3
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1324.3 809 86.7
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1323.1 794 87.8
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1317.4 808 86.5
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1295.0 808 85.0
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1250.7 804 82.8
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1229.9 801 79.8
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1220.7 799 79.1
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1217.2 798 78.7
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1211.8 806 79.4
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1211.8 798 79.1
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1207.6 791 80.9
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1203.7 814 78.4
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1202.2 792 79.5
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1201.4 808 78.8
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1199.9 782 80.8
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1199.1 804 78.5
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1196.0 806 78.2
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1190.6 801 78.8
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1186.8 803 77.2
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1182.5 803 78.7
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1178.7 808 78.1
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1176.4 804 78.2
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1174.5 867 73.6
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1173.3 818 76.9
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1172.9 800 77.1
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1168.3 798 76.6
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1166.8 804 76.9
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1161.7 797 77.0
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1159.4 803 76.1
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1157.5 801 76.0
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1153.7 755 80.0
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1150.2 846 71.6
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1148.3 791 76.4
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1147.1 797 76.9
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1145.6 798 75.3
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1145.2 807 75.5
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1144.8 801 76.2
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1144.0 790 76.5
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1143.6 801 76.0
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1138.6 793 74.9
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1136.3 849 72.9
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1130.5 804 74.4
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1124.4 798 74.8
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1124.4 795 74.3
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1122.1 797 74.7
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1121.7 809 72.8
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1117.1 795 74.3
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1112.1 901 67.9
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1110.5 819 72.2
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1109.4 802 73.4
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1107.0 797 72.8
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1106.3 784 74.2
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1102.0 801 73.4
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1097.4 787 73.4
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1097.0 784 73.7
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1095.1 797 73.0
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1094.7 796 73.4
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1094.3 793 73.6
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 0.0e+00 1090.1 672 83.6
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1087.8 812 71.1
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1086.6 809 70.7
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 0.0e+00 1085.9 796 71.5
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1085.9 800 72.5
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 0.0e+00 1085.5 809 72.2
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1083.9 809 70.5
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1082.0 788 73.1
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1080.5 809 70.8
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1079.3 806 71.8
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 0.0e+00 1076.6 807 71.1
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1076.6 794 71.2
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1075.5 816 71.1
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 0.0e+00 1075.1 792 71.2
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.1e-311 1073.2 763 74.6
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 4.9e-311 1070.8 788 72.1
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 4.9e-311 1070.8 788 72.1
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 4.9e-311 1070.8 797 71.0
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 4.1e-310 1067.8 785 72.1
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 2.7e-309 1065.1 785 72.0
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 2.7e-309 1065.1 785 72.0
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.7e-309 1065.1 801 70.4
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 9.5e-307 1056.6 796 71.0
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 4.7e-306 1054.3 806 70.3
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 2.2e-303 1045.4 646 83.1
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.0e-300 1036.6 797 71.5
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.3e-300 1035.4 787 70.0
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 7.3e-299 1030.4 646 82.4
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 9.5e-299 1030.0 646 82.5
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 6.1e-298 1027.3 798 67.7
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.3e-295 1019.6 803 68.4
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 6.2e-290 1000.7 794 67.0
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 4.0e-289 998.0 785 67.6
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.7e-284 982.6 785 68.4
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 7.3e-283 977.2 785 67.6
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 7.3e-283 977.2 804 67.3
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 7.3e-283 977.2 846 63.8
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 4.7e-282 974.5 801 65.8
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 4.9e-279 964.5 785 67.8
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 1.6e-274 949.5 786 65.4
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 1.8e-273 946.0 779 66.9
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 4.0e-273 944.9 807 62.2
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 6.2e-266 921.0 787 65.6
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.1e-258 894.0 710 71.0
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 4.0e-257 891.7 806 60.8
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 1.7e-255 886.3 813 59.2
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.8e-252 876.3 804 58.3
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.4e-249 866.7 793 59.9
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 2.8e-226 789.3 637 67.3
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 4.8e-226 788.5 654 66.2
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.6e-213 746.9 800 52.1
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 4.8e-210 735.3 480 80.0
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.5e-198 695.3 846 48.5
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.5e-198 695.3 846 48.5
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.9e-184 648.7 840 46.1
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 9.5e-182 641.3 874 44.2
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.2e-176 624.4 615 57.4
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 3.1e-172 609.8 459 68.8
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.2e-172 609.0 648 53.2
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 8.9e-172 608.2 526 63.3
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 3.9e-167 592.8 598 56.7
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 5.6e-166 589.0 827 43.0
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 4.0e-164 582.8 434 70.0
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 2.4e-140 503.8 406 69.2
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-115 421.8 600 46.3
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 4.1e-100 370.2 614 42.7
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.3e-85 322.0 212 79.2
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.4e-79 302.0 766 32.0
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 5.7e-78 296.6 689 35.8
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.0e-74 285.8 207 70.5
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 1.0e-71 275.8 197 71.1
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.8e-71 275.0 197 71.1
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.8e-71 275.0 197 71.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 3.4e-70 270.8 210 66.7
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 4.3e-65 253.8 236 60.2
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 2.6e-62 244.6 121 95.9
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 8.3e-61 239.6 476 39.5
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.0e-59 235.0 445 38.7
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 3.9e-50 204.1 131 80.9
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 7.6e-46 189.9 795 27.9
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.7e-40 170.6 236 45.8
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.9e-39 166.4 87 83.9
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.9e-39 166.4 87 83.9
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.4e-36 159.1 92 79.3
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.5e-33 149.1 360 31.9
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.4e-31 142.5 166 48.2
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.4e-30 137.5 130 56.2
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-23 116.3 89 59.6
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 1.8e-23 115.5 75 80.0
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.2e-20 104.8 149 40.3
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 9.3e-20 103.2 74 67.6
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 2.3e-18 98.6 57 87.7
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 5.1e-18 97.4 71 63.4
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.1e-18 97.4 107 50.5
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.3e-17 94.7 139 46.0
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 9.6e-17 93.2 84 57.1
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 9.0e-15 86.7 78 62.8
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 6.5e-13 80.5 59 59.3
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 2.5e-12 78.6 77 57.1
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 3.2e-12 78.2 111 46.8
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 4.6e-11 74.3 52 76.9
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 6.0e-11 73.9 78 56.4
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 8.7e-10 70.1 50 76.0
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 4.3e-09 67.8 50 72.0
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 5.7e-09 67.4 65 60.0
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 9.6e-09 66.6 76 52.6
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.4e-07 62.8 241 29.5
Oeu049880.1 Olea europaea HOM05D000526 ORTHO05D000956 1.8e-07 62.4 74 52.7
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 7.6e-06 57.0 118 38.1


User provided reference genes

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