Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 1.0e-79 300.1 155 100.0
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 1.9e-70 269.2 153 92.2
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.7e-63 246.1 138 91.3
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 1.1e-60 236.9 153 82.4
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.4e-52 209.1 152 75.7
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 5.2e-52 208.0 152 75.0
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.2e-52 208.0 152 75.0
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.6e-51 205.7 152 74.3
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.2e-50 202.6 152 74.3
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 5.4e-49 198.0 153 74.5
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 9.2e-49 197.2 152 71.1
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 1.2e-48 196.8 153 71.9
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 3.5e-48 195.3 155 69.7
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 5.1e-47 191.4 157 67.5
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.5e-46 189.9 153 68.6
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 1.9e-46 189.5 138 72.5
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 9.6e-46 187.2 153 65.4
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 9.6e-46 187.2 152 67.1
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 2.8e-45 185.7 156 65.4
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 6.2e-45 184.5 134 68.7
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 6.2e-45 184.5 155 65.2
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 8.1e-45 184.1 142 68.3
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 1.8e-44 183.0 154 64.9
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 2.4e-44 182.6 153 66.7
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 3.1e-44 182.2 154 66.2
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 6.9e-44 181.0 153 65.4
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 9.0e-44 180.6 151 63.6
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.2e-43 180.3 157 64.3
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 7.6e-43 177.6 141 66.7
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 7.6e-43 177.6 141 66.7
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 7.6e-43 177.6 148 64.9
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.3e-42 176.8 155 63.9
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 1.7e-42 176.4 139 68.3
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 3.8e-42 175.3 152 63.2
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 4.9e-42 174.9 160 63.1
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 4.9e-42 174.9 159 63.5
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 1.1e-41 173.7 138 67.4
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 4.2e-41 171.8 153 64.7
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 7.1e-41 171.0 139 68.3
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 7.1e-41 171.0 157 61.1
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 9.3e-41 170.6 129 71.3
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 1.2e-40 170.2 129 71.3
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 4.6e-40 168.3 138 68.1
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 1.0e-39 167.2 154 64.3
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.3e-39 166.8 158 60.1
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 1.7e-39 166.4 218 49.1
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 3.0e-39 165.6 152 61.8
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.0e-39 165.6 157 59.2
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 3.9e-39 165.2 129 69.0
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 1.5e-38 163.3 153 57.5
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 1.5e-38 163.3 153 58.8
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 5.6e-38 161.4 154 61.7
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 5.6e-38 161.4 153 59.5
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 2.1e-37 159.5 151 55.6
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 4.8e-37 158.3 140 60.7
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 4.8e-37 158.3 141 61.7
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 6.2e-37 157.9 187 52.9
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 6.2e-37 157.9 138 62.3
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 8.1e-37 157.5 128 65.6
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 8.1e-37 157.5 153 60.1
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.4e-36 156.8 142 61.3
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 1.8e-36 156.4 134 64.9
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 2.4e-36 156.0 127 66.9
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 5.3e-36 154.8 138 63.0
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 1.5e-35 153.3 255 42.4
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 2.0e-35 152.9 140 58.6
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 2.6e-35 152.5 161 53.4
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 4.5e-35 151.8 138 58.7
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 5.8e-35 151.4 159 55.3
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 7.6e-35 151.0 138 58.7
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 9.9e-35 150.6 156 56.4
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 3.8e-34 148.7 157 58.6
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 6.4e-34 147.9 145 58.6
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 8.4e-34 147.5 150 54.0
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.1e-33 147.1 153 51.6
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 1.4e-33 146.7 108 72.2
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.9e-33 146.4 133 62.4
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 2.4e-33 146.0 131 58.0
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 3.2e-33 145.6 135 60.7
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 3.2e-33 145.6 130 57.7
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 3.2e-33 145.6 157 54.1
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 4.2e-33 145.2 143 59.4
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 5.4e-33 144.8 130 56.9
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 5.4e-33 144.8 154 51.3
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 9.3e-33 144.1 129 58.1
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 1.2e-32 143.7 130 57.7
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 1.2e-32 143.7 130 57.7
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 1.2e-32 143.7 138 55.1
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 1.6e-32 143.3 130 56.9
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.1e-32 142.9 148 52.0
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 2.7e-32 142.5 156 54.5
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 3.5e-32 142.1 155 51.6
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 4.6e-32 141.7 152 52.6
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 6.0e-32 141.4 128 57.8
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 6.0e-32 141.4 128 57.8
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 7.9e-32 141.0 128 57.8
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 1.0e-31 140.6 128 57.8
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 1.3e-31 140.2 128 57.8
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 1.3e-31 140.2 144 54.2
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 3.0e-31 139.0 134 58.2
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 3.9e-31 138.7 154 54.5
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 5.1e-31 138.3 136 57.4
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 1.1e-30 137.1 150 50.0
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 6.2e-29 131.3 136 53.7
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 8.1e-29 131.0 79 88.6
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.4e-28 130.2 105 66.7
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 5.3e-28 128.3 121 55.4
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 7.6e-27 124.4 105 63.8
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 1.0e-26 124.0 128 53.1
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 2.9e-26 122.5 133 52.6
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 2.9e-26 122.5 127 51.2
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 4.9e-26 121.7 147 50.3
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 1.1e-25 120.6 127 52.0
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 1.9e-25 119.8 137 52.6
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 2.5e-25 119.4 107 57.9
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 5.5e-25 118.2 209 40.2
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 5.1e-23 111.7 105 56.2
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 6.7e-23 111.3 122 54.1
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 3.3e-22 109.0 107 54.2
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 2.1e-21 106.3 105 53.3
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 2.4e-20 102.8 237 32.1
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 4.0e-20 102.1 133 43.6
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 5.3e-20 101.7 155 41.3
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 5.3e-20 101.7 155 41.3
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 9.0e-20 100.9 137 49.6
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 1.5e-19 100.1 170 36.5
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 5.8e-19 98.2 114 52.6
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 5.8e-19 98.2 114 52.6
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.7e-18 96.7 154 39.0
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 2.2e-18 96.3 104 49.0
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 1.2e-16 90.5 130 40.8
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 8.7e-15 84.3 85 52.9
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 5.7e-14 81.6 154 35.1
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 7.4e-14 81.3 113 46.0
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 3.7e-13 79.0 88 47.7
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 8.2e-13 77.8 88 47.7
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 6.9e-12 74.7 88 46.6
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 6.9e-12 74.7 88 46.6
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 1.5e-11 73.6 88 45.5
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 4.5e-11 72.0 60 61.7
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 5.9e-11 71.6 154 34.4
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 7.7e-11 71.2 84 46.4
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 7.7e-11 71.2 84 46.4
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 1.4e-07 60.5 58 56.9
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 9.7e-06 54.3 45 62.2


User provided reference genes

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