Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 3887.0 1971 100.0
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 3330.4 1975 86.0
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 3032.7 1969 78.2
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2977.2 1966 76.9
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2670.6 1980 69.0
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2642.8 1978 68.8
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2642.1 1979 68.1
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2599.7 2004 67.1
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2584.3 1980 66.8
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2583.1 1974 67.2
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 2569.3 1958 68.7
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2548.9 1975 66.2
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2504.9 1974 65.1
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2488.4 1973 63.9
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2484.5 1976 64.9
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2459.9 1978 63.5
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2450.2 1974 63.8
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2445.6 2063 62.1
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2422.9 1975 63.1
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2420.2 1956 63.9
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2410.6 1970 63.0
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2408.6 1979 63.2
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2403.6 1977 62.7
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2395.2 1970 62.8
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2391.3 1978 62.8
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2380.1 1993 62.6
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2374.7 1975 61.9
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2374.4 1975 62.4
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2368.6 1978 61.0
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2365.5 1952 62.7
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2358.9 1981 61.5
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2343.9 2172 57.3
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2310.8 2180 56.9
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2309.6 1975 61.8
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2304.2 1863 63.2
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2294.2 1979 61.2
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2271.9 1973 59.7
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2256.1 1974 58.5
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2251.5 2267 53.6
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2246.1 1822 63.7
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2244.5 2147 56.6
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2235.7 1985 57.7
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2231.8 1988 57.7
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2230.3 1966 58.2
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2226.8 1968 57.9
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2218.0 1966 57.9
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2217.6 1945 60.2
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2202.9 1976 57.6
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2199.1 1964 57.4
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2196.8 1969 57.9
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2196.4 1827 60.6
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2194.1 1978 57.0
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 2193.3 1968 57.1
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2192.2 1977 56.8
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2191.4 1974 57.4
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2188.7 1965 57.1
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2187.9 1979 57.3
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2182.9 1991 56.6
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2179.8 1966 58.0
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2178.7 1992 56.4
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2177.9 1972 56.8
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 2176.0 1969 57.2
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2170.2 1965 57.0
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2167.9 1981 57.1
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2161.3 1966 56.7
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2159.4 1959 56.8
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2157.5 1974 56.9
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 2140.2 2015 54.7
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 2131.7 1610 67.1
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2083.1 1966 55.4
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 2034.2 1949 55.1
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2023.1 1957 53.9
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2015.7 1839 56.9
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1999.6 1987 53.3
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1966.8 2007 52.8
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1939.5 1949 53.4
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1889.8 2006 50.9
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1689.5 1177 71.6
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1612.0 1270 62.4
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1538.5 1266 61.5
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1406.0 1841 42.3
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1323.9 1076 63.5
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1313.5 2031 39.3
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1291.9 2077 38.9
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1256.9 1005 64.2
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1212.2 1444 46.1
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1192.9 2039 36.9
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1108.6 1167 50.7
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 0.0e+00 1082.8 2144 34.2
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.1e-282 978.0 898 58.1
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 8.4e-280 968.4 783 62.8
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 5.0e-264 916.0 1010 49.2
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 4.6e-262 909.4 791 59.9
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 6.3e-259 899.0 1128 46.6
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 6.1e-254 882.5 956 50.3
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.2e-249 868.2 973 49.1
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 7.0e-202 709.5 681 56.7
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 3.4e-172 610.9 500 61.8
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 1.3e-166 592.4 538 59.7
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 3.7e-166 590.9 544 55.5
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 4.0e-165 587.4 521 59.3
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 3.1e-141 508.1 463 58.5
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 2.2e-139 501.9 393 64.6
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 3.9e-136 491.1 442 58.8
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.4e-125 456.1 299 75.6
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.8e-125 455.7 662 42.1
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 2.1e-113 415.6 869 33.1
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 8.0e-105 387.1 344 61.6
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 8.9e-96 357.1 392 47.4
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.4e-93 349.7 260 63.1
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 2.4e-93 349.0 224 78.1
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 3.5e-92 345.1 229 77.7
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 4.0e-88 331.6 341 54.8
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.6e-81 309.7 241 70.1
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 1.7e-78 299.7 193 78.2
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 4.9e-78 298.1 193 77.2
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 1.4e-64 253.4 374 40.9
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.2e-60 240.4 316 43.4
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 1.1e-58 233.8 293 45.7
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.5e-45 189.5 164 56.1
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 2.5e-45 189.5 288 41.7
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 1.1e-42 180.6 532 29.3
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.1e-41 176.4 309 35.3
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 6.9e-40 171.4 150 62.7
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 1.2e-36 160.6 118 70.3
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.9e-34 153.3 299 34.4
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 3.7e-33 149.1 141 56.0
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 6.5e-30 138.3 132 53.0
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.5e-29 136.3 101 66.3
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 3.2e-29 136.0 151 49.0
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 9.4e-29 134.4 131 53.4
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.6e-28 133.7 207 40.1
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 9.7e-26 124.4 227 37.0
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.7e-25 123.6 290 32.8
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 6.3e-25 121.7 92 65.2
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 1.6e-20 107.1 145 47.6
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 8.8e-19 101.3 102 50.0
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.2e-15 90.9 170 38.8
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.2e-15 90.9 88 54.5
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.6e-15 89.7 87 49.4
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.6e-15 89.7 87 49.4
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 3.5e-15 89.4 91 48.4
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 5.9e-15 88.6 87 48.3
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 5.0e-14 85.5 89 48.3
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 1.9e-13 83.6 143 37.8
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 3.2e-13 82.8 88 52.3
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 2.1e-12 80.1 123 39.8
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.0e-11 77.8 61 63.9
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.5e-10 73.9 116 39.7
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 1.5e-10 73.9 116 39.7
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 1.5e-10 73.9 120 39.2
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 4.4e-10 72.4 51 66.7
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 1.3e-09 70.9 112 33.0
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 2.2e-09 70.1 98 41.8
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 3.7e-09 69.3 46 71.7
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 4.8e-09 68.9 54 57.4
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 2.4e-08 66.6 54 55.6
FvH4_6g01570 Fragaria vesca HOM05D050252 ORTHO05D046045 3.1e-08 66.2 124 36.3
FAN19G2132 Fragaria x ananassa HOM05D050252 ORTHO05D046045 2.0e-07 63.5 67 56.7
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 7.7e-07 61.6 74 35.1
SMO144G0155 Selaginella moellendorffii HOM05D004963 ORTHO05D379285 2.2e-06 60.1 168 31.5


User provided reference genes

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