Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 8.2e-163 577.0 295 100.0
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 8.5e-128 460.7 263 87.1
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.4e-122 443.4 295 76.3
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 2.4e-122 442.6 292 79.5
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 4.1e-122 441.8 239 90.8
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.6e-121 439.9 292 78.8
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.0e-120 437.2 292 77.4
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.9e-120 435.6 292 78.1
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 8.6e-112 407.5 265 74.3
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 1.6e-110 403.3 242 78.5
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 3.6e-110 402.1 230 80.0
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 6.1e-110 401.4 293 70.6
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.0e-109 400.6 246 78.5
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 1.0e-109 400.6 242 77.7
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 4.0e-109 398.7 271 71.2
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 2.2e-107 392.9 292 68.2
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 8.3e-107 391.0 303 67.7
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.1e-106 390.6 292 68.8
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 1.9e-106 389.8 298 68.1
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 2.4e-106 389.4 298 66.4
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 3.2e-106 389.0 231 77.5
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 7.0e-106 387.9 266 72.2
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 7.0e-106 387.9 292 67.1
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 4.6e-105 385.2 291 67.7
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 6.0e-105 384.8 289 67.1
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.0e-104 384.0 228 78.5
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.0e-104 384.0 228 78.5
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 8.6e-104 380.9 291 66.7
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.1e-103 380.6 295 64.7
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.5e-103 380.2 305 64.3
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 1.9e-103 379.8 243 75.3
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 3.3e-103 379.0 230 76.1
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 5.6e-103 378.3 221 78.7
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 7.3e-103 377.9 292 65.8
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 1.2e-102 377.1 221 78.7
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 3.6e-102 375.6 221 78.7
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 4.7e-102 375.2 293 65.9
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 4.7e-102 375.2 266 69.5
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 6.2e-102 374.8 283 68.2
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 8.0e-102 374.4 289 65.7
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 1.4e-101 373.6 290 65.2
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 1.8e-101 373.2 265 68.3
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 1.8e-101 373.2 250 70.8
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.8e-101 373.2 292 64.7
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 4.0e-101 372.1 291 63.9
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 8.9e-101 370.9 229 76.9
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 1.2e-100 370.5 232 73.3
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.5e-100 370.2 235 71.9
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 2.6e-100 369.4 252 71.4
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 4.4e-100 368.6 262 69.8
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.9e-99 365.9 295 63.4
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 3.7e-99 365.5 227 76.7
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 4.9e-99 365.2 276 66.7
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 6.4e-99 364.8 295 62.7
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 1.4e-98 363.6 288 62.5
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 2.4e-98 362.8 221 76.0
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 3.2e-98 362.5 288 62.5
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 5.4e-98 361.7 263 66.9
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 9.2e-98 360.9 288 62.2
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.6e-97 360.1 263 66.2
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 2.1e-97 359.8 227 75.8
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 2.1e-97 359.8 242 69.0
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.0e-96 357.5 235 71.5
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.3e-96 357.1 255 67.1
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.7e-96 356.7 306 62.4
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 3.9e-96 355.5 300 63.3
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 6.6e-96 354.8 243 70.0
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 8.6e-96 354.4 290 62.8
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 8.6e-96 354.4 295 62.0
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 8.6e-96 354.4 241 69.7
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.5e-95 353.6 271 64.2
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 1.5e-95 353.6 295 61.4
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.9e-95 353.2 232 72.0
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 3.3e-95 352.4 288 61.8
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 5.6e-95 351.7 291 61.9
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 1.6e-94 350.1 289 64.4
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 2.1e-94 349.7 263 65.4
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 8.9e-93 344.4 296 60.1
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.2e-92 344.0 247 66.0
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 1.3e-91 340.5 293 60.1
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.7e-91 340.1 289 60.2
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 2.2e-91 339.7 232 66.4
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 1.1e-90 337.4 317 55.8
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.9e-90 336.7 288 61.5
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.9e-90 336.7 236 65.7
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 1.6e-89 333.6 290 58.6
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 2.3e-88 329.7 238 65.5
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 3.0e-88 329.3 257 68.5
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 3.3e-87 325.9 282 58.5
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 8.1e-86 321.2 201 73.1
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 6.8e-85 318.2 250 62.0
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 8.4e-83 311.2 183 79.2
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 3.2e-82 309.3 221 64.3
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 4.2e-82 308.9 226 61.9
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 2.7e-81 306.2 256 59.8
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.0e-80 304.3 183 78.7
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.3e-80 303.9 274 57.7
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 2.3e-80 303.1 238 63.0
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 3.0e-80 302.8 274 57.7
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 3.0e-80 302.8 221 65.6
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.0e-80 302.8 233 66.5
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 1.9e-79 300.1 260 57.7
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 2.5e-79 299.7 264 56.1
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 3.3e-79 299.3 258 56.6
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 4.0e-77 292.4 298 54.4
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 4.0e-77 292.4 203 68.0
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 6.9e-77 291.6 260 56.2
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 2.0e-76 290.0 301 54.2
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 2.2e-75 286.6 175 78.3
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 2.7e-73 279.6 179 73.2
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 6.0e-73 278.5 223 59.2
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 7.3e-71 271.6 300 54.0
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 1.1e-66 257.7 153 77.8
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 3.7e-62 242.7 192 62.0
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 2.6e-60 236.5 233 54.1
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 1.3e-51 207.6 309 40.1
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 3.9e-48 196.1 265 39.6
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 6.3e-46 188.7 113 78.8
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 3.1e-45 186.4 129 66.7
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 2.6e-44 183.3 116 70.7
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 5.9e-44 182.2 297 41.4
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 2.3e-40 170.2 113 70.8
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 1.5e-39 167.5 296 37.2
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 8.2e-38 161.8 127 63.8
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.9e-35 153.3 116 62.9
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 8.2e-30 135.2 181 49.2
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 5.9e-28 129.0 77 79.2
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 5.9e-28 129.0 72 80.6
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.2e-25 121.3 283 32.5
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.0e-24 118.2 77 70.1
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 6.3e-22 109.0 81 63.0
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 8.0e-17 92.0 78 59.0
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.5e-15 87.8 57 68.4
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 7.7e-12 75.5 80 51.2


User provided reference genes

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