Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1012200 Malus domestica HOM05D000147 ORTHO05D007818 4.8e-163 577.8 296 100.0
MD09G1011500 Malus domestica HOM05D000147 ORTHO05D007818 8.0e-126 454.1 277 85.9
Prupe.3G305500 Prunus persica HOM05D000147 ORTHO05D007818 4.3e-111 405.2 276 76.8
FvH4_6g53320 Fragaria vesca HOM05D000147 ORTHO05D007818 1.6e-94 350.1 276 68.1
FAN14G4861 Fragaria x ananassa HOM05D000147 ORTHO05D007818 4.7e-94 348.6 276 67.4
FAN05G2422 Fragaria x ananassa HOM05D000147 ORTHO05D007818 2.4e-93 346.3 276 67.4
FAN09G2864 Fragaria x ananassa HOM05D000147 ORTHO05D007818 7.6e-92 341.3 276 67.0
RcHm_v2.0_Chr2g0175481 Rosa chinensis HOM05D000147 ORTHO05D007818 2.2e-91 339.7 276 67.0
FAN02G3884 Fragaria x ananassa HOM05D000147 ORTHO05D007818 9.0e-77 291.2 276 60.1
QL02p071567 Quercus lobata HOM05D000147 ORTHO05D007818 7.6e-76 288.1 260 60.0
Dinv33344 Davidia involucrata HOM05D000147 ORTHO05D007818 1.1e-74 284.3 260 59.2
GSVIVG01033101001 Vitis vinifera HOM05D000147 ORTHO05D007818 1.5e-71 273.9 259 57.1
Haze_14867 Corylus avellana HOM05D000147 ORTHO05D007818 3.3e-71 272.7 259 58.7
CiPaw.03G054800 Carya illinoinensis HOM05D000147 ORTHO05D007818 7.4e-71 271.6 260 57.3
Manes.15G160100 Manihot esculenta HOM05D000147 ORTHO05D007818 9.6e-71 271.2 284 51.4
Cfa007233 Carpinus fangiana HOM05D000147 ORTHO05D007818 3.7e-70 269.2 259 58.7
Thecc.04G035000 Theobroma cacao HOM05D000147 ORTHO05D007818 2.4e-69 266.5 260 57.3
Actinidia36198 Actinidia chinensis HOM05D000147 ORTHO05D007818 6.9e-69 265.0 261 55.9
Rhsim10G0006800 Rhododendron simsii HOM05D000147 ORTHO05D007818 1.4e-66 257.3 262 52.7
Atru.chr6.2553 Acer truncatum HOM05D000147 ORTHO05D007818 2.5e-66 256.5 276 54.7
Duzib264G0787 Durio zibethinus HOM05D000147 ORTHO05D007818 3.2e-66 256.1 260 55.0
TAR622G0568 Trochodendron aralioides HOM05D000147 ORTHO05D007818 4.2e-66 255.8 307 50.5
Gohir.A09G040880 Gossypium hirsutum HOM05D000147 ORTHO05D007818 9.3e-66 254.6 272 53.7
Atru.chr6.2561 Acer truncatum HOM05D000147 ORTHO05D007818 1.6e-65 253.8 276 54.3
Hma1.2p1_0279F.1_g112690 Hydrangea macrophylla HOM05D000147 ORTHO05D007818 2.7e-65 253.1 259 52.5
Potri.001G331200 Populus trichocarpa HOM05D000147 ORTHO05D007818 4.6e-65 252.3 283 51.9
COL.COLO4_17200 Corchorus olitorius HOM05D000147 ORTHO05D007818 6.0e-65 251.9 271 52.4
Ciclev10014509m.g Citrus clementina HOM05D000147 ORTHO05D007818 7.9e-65 251.5 257 54.5
Gohir.D09G036500 Gossypium hirsutum HOM05D000147 ORTHO05D007818 1.0e-64 251.1 272 53.3
Glyma.05G077900 Glycine max HOM05D000147 ORTHO05D007818 1.8e-64 250.4 260 52.7
Gorai.006G041500 Gossypium raimondii HOM05D000147 ORTHO05D007818 2.3e-64 250.0 272 52.9
Hma1.2p1_0279F.1_g112680 Hydrangea macrophylla HOM05D000147 ORTHO05D007818 3.3e-63 246.1 259 52.1
Oeu011752.1 Olea europaea HOM05D000147 ORTHO05D007818 4.3e-63 245.7 276 50.4
Glyma.19G071600 Glycine max HOM05D000147 ORTHO05D007818 7.4e-63 245.0 272 50.0
CANSAT64G1024 Cannabis sativa HOM05D000147 ORTHO05D007818 2.1e-62 243.4 275 52.0
Lj7A608T51 Lonicera japonica HOM05D000147 ORTHO05D007818 8.2e-62 241.5 263 53.2
arahy.Tifrunner.gnm1.ann1.NFZ2HX Arachis hypogaea HOM05D000147 ORTHO05D007818 8.5e-59 231.5 260 50.0
Lj2g0016330 Lotus japonicus HOM05D000147 ORTHO05D007818 1.4e-58 230.7 260 50.4
arahy.Tifrunner.gnm1.ann1.TKGH9F Arachis hypogaea HOM05D000147 ORTHO05D007818 7.2e-58 228.4 260 49.6
Psat1g085760 Pisum sativum HOM05D000147 ORTHO05D007818 9.3e-58 228.0 257 48.6
Eucgr.J02336 Eucalyptus grandis HOM05D000147 ORTHO05D007818 2.7e-57 226.5 260 48.8
Sed0024484 Sechium edule HOM05D000147 ORTHO05D007818 3.6e-57 226.1 292 46.6
MBI07_g34625_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D007818 4.6e-57 225.7 289 47.8
Nn3g16492 Nelumbo nucifera HOM05D000147 ORTHO05D007818 1.0e-56 224.6 286 46.5
ClCG11G007070 Citrullus lanatus HOM05D000147 ORTHO05D007818 6.7e-56 221.9 266 51.5
Phvul.004G063800 Phaseolus vulgaris HOM05D000147 ORTHO05D007818 8.7e-56 221.5 261 50.2
CsaV3_2G034150 Cucumis sativus L. HOM05D000147 ORTHO05D007818 1.5e-55 220.7 300 48.3
Lalb_Chr22g0360411 Lupinus albus HOM05D000147 ORTHO05D007818 2.5e-55 219.9 259 47.9
MSTRG.3079 Avicennia marina HOM05D000147 ORTHO05D007818 1.3e-54 217.6 280 49.3
vmacro05953 Vaccinium macrocarpon HOM05D000147 ORTHO05D007818 2.4e-53 213.4 266 47.4
SHI03943 Sapria himalayana HOM05D000147 ORTHO05D007818 1.5e-52 210.7 260 47.7
Medtr6g023875 Medicago truncatula HOM05D000147 ORTHO05D007818 2.0e-52 210.3 260 46.2
TWI36G0450 Tripterygium wilfordii HOM05D000147 ORTHO05D007818 1.0e-51 208.0 287 43.6
Cpa.g.sc171.22 Carica papaya HOM05D000147 ORTHO05D007818 3.8e-51 206.1 272 46.3
SalBow4G0651 Salvia bowleyana HOM05D000147 ORTHO05D007818 5.0e-51 205.7 263 48.7
Migut.F00070 Erythranthe guttata HOM05D000147 ORTHO05D007818 6.5e-51 205.3 282 46.5
Aqoxy5G03406 Aquilegia oxysepala HOM05D000147 ORTHO05D007818 3.2e-50 203.0 287 46.3
Cc07_g00780 Coffea canephora HOM05D000147 ORTHO05D007818 9.4e-50 201.4 259 46.3
THA.LOC104805328 Tarenaya hassleriana HOM05D000147 ORTHO05D007818 3.6e-49 199.5 257 47.1
MELO3C008195.2 Cucumis melo HOM05D000147 ORTHO05D007818 6.7e-48 195.3 262 47.7
Lsat_1_v5_gn_2_94840 Lactuca sativa HOM05D000147 ORTHO05D007818 6.7e-48 195.3 256 45.7
EL10Ac6g15362 Beta vulgaris HOM05D000147 ORTHO05D007818 8.8e-48 194.9 255 43.9
Hund04336 Selenicereus undatus HOM05D000147 ORTHO05D007818 3.3e-47 193.0 257 45.9
SGA_v2.0_scaffold44G16910 Striga asiatica HOM05D000147 ORTHO05D007818 5.7e-47 192.2 281 44.5
C02p53750 Brassica napus HOM05D000147 ORTHO05D007818 3.7e-46 189.5 255 44.7
AUR62003507 Chenopodium quinoa HOM05D000147 ORTHO05D007818 6.3e-46 188.7 277 43.3
BcaC03g17425 Brassica carinata HOM05D000147 ORTHO05D007818 1.1e-45 188.0 255 44.3
AUR62017818 Chenopodium quinoa HOM05D000147 ORTHO05D007818 1.1e-45 188.0 276 42.0
ECA238G3602 Erigeron canadensis HOM05D000147 ORTHO05D007818 1.4e-45 187.6 264 45.1
Aa31LG2G5480 Aethionema arabicum HOM05D000614 ORTHO05D007818 2.4e-45 186.8 257 43.2
CAN.G473.94 Capsicum annuum HOM05D000147 ORTHO05D007818 3.1e-45 186.4 258 45.0
ATR0561G019 Amborella trichopoda HOM05D000147 ORTHO05D007818 5.3e-45 185.7 270 41.1
Nitab4.5_0011569g0020 Nicotiana tabacum HOM05D000147 ORTHO05D007818 1.5e-44 184.1 286 41.6
Peaxi162Scf00420g00544 Petunia axillaris HOM05D000147 ORTHO05D007818 4.5e-44 182.6 260 44.2
BcaB07g30187 Brassica carinata HOM05D000147 ORTHO05D007818 5.9e-44 182.2 260 43.5
CARHR148340 Cardamine hirsuta HOM05D000147 ORTHO05D007818 1.4e-42 177.6 259 43.6
AUR62044271 Chenopodium quinoa HOM05D000147 ORTHO05D007818 4.2e-42 176.0 255 41.2
Peaxi162Scf00692g00520 Petunia axillaris HOM05D000147 ORTHO05D007818 1.6e-41 174.1 258 43.0
AT3G27120 Arabidopsis thaliana HOM05D000147 ORTHO05D007818 2.1e-41 173.7 259 43.2
DCAR_000964 Daucus carota HOM05D000147 ORTHO05D007818 7.9e-41 171.8 256 42.2
Thhalv10003791m.g Eutrema salsugineum HOM05D000147 ORTHO05D007818 5.2e-40 169.1 259 41.3
PGR083G1780 Punica granatum HOM05D000147 ORTHO05D007818 6.7e-40 168.7 262 40.5
Sc09g0006610 Simmondsia chinensis HOM05D000147 ORTHO05D007818 1.5e-39 167.5 273 39.9
Sp2g16250 Schrenkiella parvula HOM05D000147 ORTHO05D007818 2.6e-39 166.8 259 40.9
Carub.0005s0537 Capsella rubella HOM05D000147 ORTHO05D007818 4.4e-39 166.0 258 42.2
PGSC0003DMG400020257 Solanum tuberosum HOM05D000147 ORTHO05D007818 4.4e-39 166.0 286 39.2
AL5G16250 Arabidopsis lyrata HOM05D000147 ORTHO05D007818 1.7e-38 164.1 259 42.1
HanXRQChr07g0198241 Helianthus annuus HOM05D000147 ORTHO05D007818 4.8e-38 162.5 253 40.7
Ah.04g158420 Amaranthus hybridus HOM05D000147 ORTHO05D007818 8.2e-38 161.8 255 39.2
Sopen02g038720 Solanum pennellii HOM05D000147 ORTHO05D007818 8.2e-38 161.8 284 38.7
Zm00001eb133210 Zea mays HOM05D000147 ORTHO05D007818 5.3e-37 159.1 273 41.8
Solyc02g094100.4 Solanum lycopersicum HOM05D000147 ORTHO05D007818 7.0e-37 158.7 286 38.8
Peaxi162Scf00166g00819 Petunia axillaris HOM05D000147 ORTHO05D007818 1.9e-34 150.6 281 39.5
Os12g0443800 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D007818 7.2e-34 148.7 291 37.5
unitig_699.g19735 Utricularia gibba HOM05D000147 ORTHO05D007818 6.1e-33 145.6 278 37.8
Ca_04433_v3 Cicer arietinum L. HOM05D000147 ORTHO05D007818 1.4e-29 134.4 178 46.6
SEGI_09594 Sequoiadendron giganteum HOM05D000147 ORTHO05D007818 1.0e-27 128.3 288 33.3
A02p35120 Brassica napus HOM05D000147 ORTHO05D033223 9.5e-18 95.1 78 61.5
TPR.G28880 Trifolium pratense HOM05D000147 ORTHO05D033223 3.0e-16 90.1 81 53.1
VMungo0464G2137 Vigna mungo HOM05D000147 ORTHO05D033223 7.5e-15 85.5 93 49.5
AagrBONN_evm.TU.Sc2ySwM_228.761 Anthoceros agrestis HOM05D000147 ORTHO05D007818 2.8e-14 83.6 180 32.2
Lsat_1_v5_gn_7_3841 Lactuca sativa HOM05D000147 ORTHO05D007818 7.0e-13 79.0 79 54.4
EL10Ac1g00071 Beta vulgaris HOM05D010647 ORTHO05D012576 1.7e-11 74.3 71 49.3
Pp3c4_18320 Physcomitrium patens HOM05D000147 ORTHO05D007818 8.6e-11 72.0 113 35.4
Mapoly0035s0108 Marchantia polymorpha HOM05D000147 ORTHO05D007818 8.9e-08 62.0 138 32.6
TPR.G21996 Trifolium pratense HOM05D000069 ORTHO05D410767 4.9e-06 56.2 171 29.8


User provided reference genes

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