Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 1.6e-212 742.7 426 100.0
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 2.5e-173 612.5 432 84.0
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 5.1e-150 535.0 443 76.3
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 2.5e-112 409.8 437 58.8
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.3e-112 409.1 436 58.3
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.0e-110 402.5 436 58.3
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.9e-108 395.6 436 56.4
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.4e-102 377.5 460 53.7
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 3.7e-100 369.4 452 54.2
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 3.9e-97 359.4 459 49.7
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 5.2e-94 349.0 450 49.8
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 2.0e-93 347.1 454 48.7
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 7.5e-93 345.1 426 49.8
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.7e-92 344.0 446 50.9
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 2.2e-92 343.6 456 50.9
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.7e-92 342.8 454 49.3
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.7e-92 342.8 456 49.3
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 4.9e-92 342.4 448 47.8
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 8.3e-92 341.7 446 49.6
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 3.2e-91 339.7 454 49.3
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 5.4e-91 339.0 454 48.7
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.3e-89 334.3 434 48.2
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.7e-89 334.0 450 50.0
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 8.6e-89 331.6 452 48.9
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.1e-88 331.3 453 48.1
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 1.9e-88 330.5 451 49.9
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 9.5e-88 328.2 456 46.7
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 2.1e-87 327.0 447 47.4
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.6e-87 326.2 451 48.3
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 2.0e-85 320.5 452 45.4
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 2.9e-84 316.6 447 47.0
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.1e-83 314.7 436 47.0
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.3e-81 307.8 442 48.4
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.7e-81 307.4 446 46.0
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.7e-81 307.4 456 46.3
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 8.7e-81 305.1 463 47.1
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 8.4e-76 288.5 449 43.4
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 1.4e-75 287.7 462 43.5
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 1.0e-73 281.6 449 48.3
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 3.9e-73 279.6 392 46.7
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 2.8e-71 273.5 453 43.3
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 8.1e-71 271.9 450 43.3
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 6.9e-70 268.9 435 44.8
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 2.2e-68 263.8 441 43.8
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 3.8e-68 263.1 451 45.9
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 6.4e-68 262.3 431 41.1
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 3.2e-67 260.0 448 46.9
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 4.2e-67 259.6 444 41.7
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 3.5e-66 256.5 444 46.4
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 3.0e-65 253.4 456 41.7
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 6.7e-65 252.3 450 41.6
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 6.7e-65 252.3 454 43.6
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 8.7e-65 251.9 430 39.5
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 2.8e-63 246.9 454 42.7
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 6.2e-63 245.7 482 40.7
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 6.2e-63 245.7 429 39.2
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 1.1e-62 245.0 463 46.0
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.1e-62 245.0 443 42.0
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 1.8e-62 244.2 448 45.8
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 6.9e-62 242.3 442 41.2
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.0e-60 238.4 444 39.4
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.7e-60 237.7 474 43.5
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.7e-60 237.7 444 40.1
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 1.7e-60 237.7 494 36.2
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 1.7e-60 237.7 456 38.6
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 1.4e-59 234.6 443 42.9
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.9e-59 234.2 440 40.5
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.7e-58 230.3 322 46.3
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 2.7e-58 230.3 458 40.2
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 2.7e-58 230.3 440 41.1
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 4.6e-58 229.6 437 38.9
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 1.0e-57 228.4 436 39.2
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.3e-57 227.3 446 40.6
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 6.7e-57 225.7 450 38.4
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.1e-56 224.9 494 39.3
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.5e-56 223.8 469 38.6
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.3e-56 223.4 322 45.7
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 4.3e-56 223.0 437 39.1
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 4.3e-56 223.0 455 37.4
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 7.4e-56 222.2 448 44.0
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 7.4e-56 222.2 452 43.6
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 6.2e-55 219.2 444 39.9
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 6.2e-55 219.2 452 37.8
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 8.2e-55 218.8 434 35.3
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 4.0e-54 216.5 440 38.4
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 7.6e-53 212.2 433 36.3
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 1.0e-52 211.8 457 39.6
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.3e-52 211.5 443 40.2
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.2e-52 210.7 429 37.5
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 6.5e-52 209.1 461 37.1
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 8.4e-52 208.8 378 38.9
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 1.1e-51 208.4 463 36.3
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.9e-51 207.6 444 39.9
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.5e-51 207.2 433 35.8
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 4.2e-51 206.5 450 36.7
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 9.3e-51 205.3 440 38.4
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.6e-50 204.5 448 37.9
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 7.9e-50 202.2 449 39.6
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 7.9e-50 202.2 460 40.2
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 3.9e-49 199.9 457 39.6
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 5.1e-49 199.5 438 36.1
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 8.7e-49 198.7 448 40.0
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.5e-48 198.0 446 36.5
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 5.7e-48 196.1 457 37.2
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 7.4e-48 195.7 432 36.6
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 7.4e-48 195.7 416 36.8
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 4.8e-47 193.0 431 35.7
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.3e-47 192.6 440 39.1
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 1.4e-46 191.4 433 35.6
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 1.4e-46 191.4 445 33.0
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 3.1e-46 190.3 439 39.6
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 4.1e-46 189.9 317 42.3
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.5e-45 188.0 441 35.4
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 3.4e-45 186.8 447 34.9
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 5.9e-45 186.0 427 36.1
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 7.7e-45 185.7 441 33.8
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 1.7e-44 184.5 407 37.1
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 5.0e-44 183.0 437 33.2
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 5.0e-44 183.0 428 35.7
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.4e-43 181.4 449 35.9
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 4.6e-42 176.4 438 33.6
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 6.1e-42 176.0 443 33.6
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 7.9e-42 175.6 549 31.3
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 5.1e-41 172.9 470 34.5
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 8.8e-41 172.2 452 33.4
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 1.1e-40 171.8 424 34.4
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 2.5e-40 170.6 465 31.0
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.7e-39 167.9 414 37.4
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.7e-39 167.9 445 33.7
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 2.2e-39 167.5 432 37.0
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 3.7e-39 166.8 438 33.1
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 8.2e-39 165.6 439 33.9
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 1.4e-38 164.9 432 31.2
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.2e-37 161.8 269 41.6
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 7.7e-37 159.1 426 33.3
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 7.7e-37 159.1 444 32.9
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.0e-36 158.7 444 33.3
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 1.7e-36 157.9 437 34.1
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 3.8e-36 156.8 439 34.4
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.4e-35 154.8 440 32.7
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 9.4e-35 152.1 367 35.7
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.2e-34 151.8 444 32.0
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.3e-33 147.5 442 33.3
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 2.3e-33 147.5 433 32.3
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 3.0e-33 147.1 368 38.9
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.9e-33 146.7 304 37.8
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 5.1e-33 146.4 436 32.8
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.1e-33 146.4 436 32.1
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.0e-32 144.4 436 32.3
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.3e-32 143.7 433 31.9
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 7.4e-32 142.5 319 34.2
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.7e-31 141.4 446 31.4
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.8e-30 137.9 444 32.2
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 7.0e-30 136.0 279 36.6
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.2e-29 135.2 429 30.5
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 3.5e-29 133.7 430 32.1
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 5.9e-29 132.9 435 29.9
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 7.7e-29 132.5 318 34.0
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 2.2e-28 131.0 436 30.0
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 3.8e-28 130.2 447 31.5
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 3.2e-27 127.1 366 32.0
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 5.5e-27 126.3 440 30.2
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 2.7e-26 124.0 377 30.8
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 3.6e-26 123.6 436 30.3
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 1.0e-25 122.1 322 39.1
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.8e-25 121.3 417 31.4
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 3.0e-25 120.6 281 37.0
FAN14G0132 Fragaria x ananassa HOM05D003379 ORTHO05D003862 9.7e-24 115.5 439 30.3
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.2e-20 104.4 176 40.3
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 3.0e-17 94.0 395 27.8
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 2.6e-16 90.9 142 54.2
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 1.1e-14 85.5 162 38.9
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.1e-14 85.5 317 30.6
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 5.4e-14 83.2 367 26.7
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 5.9e-13 79.7 210 31.4
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 1.3e-12 78.6 165 37.6
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 2.9e-12 77.4 75 52.0
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 5.0e-12 76.6 75 52.0
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 1.5e-11 75.1 75 50.7
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 7.2e-11 72.8 144 36.8
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 8.0e-10 69.3 95 38.9
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 1.4e-09 68.6 95 42.1
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.3e-09 67.8 188 32.4
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 3.0e-09 67.4 104 40.4
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 4.0e-09 67.0 137 35.8
AagrBONN_evm.TU.Sc2ySwM_369.605 Anthoceros agrestis HOM05D003379 ORTHO05D003862 6.3e-07 59.7 242 27.3
SalBow6G4465 Salvia bowleyana HOM05D003379 ORTHO05D003862 2.4e-06 57.8 150 40.0


User provided reference genes

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