Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 2.6e-138 495.4 249 100.0
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 1.2e-125 453.4 246 92.3
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 1.6e-119 433.0 249 86.3
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 6.6e-105 384.4 235 81.3
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 6.6e-105 384.4 241 77.2
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 2.5e-104 382.5 246 76.0
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 9.5e-104 380.6 246 77.2
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 2.8e-103 379.0 249 76.3
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 1.0e-102 377.1 277 71.1
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 4.0e-102 375.2 245 75.1
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 6.8e-102 374.4 230 80.9
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 1.5e-101 373.2 240 75.4
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 2.6e-101 372.5 245 74.7
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 2.2e-100 369.4 276 69.9
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 2.2e-100 369.4 245 75.1
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 2.9e-100 369.0 277 69.7
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 6.4e-100 367.9 237 78.1
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 1.8e-99 366.3 245 75.1
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 1.8e-99 366.3 245 72.7
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 5.4e-99 364.8 276 69.2
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 7.0e-99 364.4 229 77.7
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 2.0e-98 362.8 248 73.4
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 2.7e-98 362.5 230 77.0
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 2.7e-98 362.5 230 77.4
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 2.7e-98 362.5 241 74.3
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 3.5e-98 362.1 241 74.3
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 1.0e-97 360.5 252 73.4
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 1.0e-97 360.5 272 68.4
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.7e-97 359.8 239 75.7
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 2.3e-97 359.4 239 74.5
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 3.0e-97 359.0 241 74.3
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 5.0e-97 358.2 248 72.6
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 6.6e-97 357.8 246 72.8
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 1.1e-96 357.1 243 73.7
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 1.1e-96 357.1 241 73.4
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 1.9e-96 356.3 241 73.0
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 4.3e-96 355.1 238 74.8
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 9.5e-96 354.0 248 73.8
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.2e-95 353.6 241 73.4
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 5.2e-94 348.2 232 76.3
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 5.2e-94 348.2 238 70.6
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 3.4e-93 345.5 239 72.4
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 4.4e-93 345.1 241 73.4
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 4.4e-93 345.1 235 73.2
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 1.3e-92 343.6 236 73.3
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 3.7e-92 342.0 239 72.4
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 3.7e-92 342.0 247 71.7
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 8.3e-92 340.9 277 65.3
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 1.4e-91 340.1 242 70.2
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 3.2e-91 339.0 254 66.1
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 5.4e-91 338.2 241 69.3
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 5.4e-91 338.2 238 70.2
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.2e-90 337.0 241 68.5
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 4.6e-90 335.1 242 69.8
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 4.6e-90 335.1 239 69.9
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 1.7e-89 333.2 247 68.4
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 3.9e-89 332.0 249 65.9
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 5.0e-89 331.6 237 69.6
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 8.6e-89 330.9 234 72.6
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 1.5e-88 330.1 247 66.8
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 2.5e-88 329.3 234 70.1
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 4.3e-88 328.6 230 71.7
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 4.3e-88 328.6 262 64.9
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 5.6e-88 328.2 230 71.7
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 7.3e-88 327.8 247 66.4
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 7.3e-88 327.8 242 69.8
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 1.2e-87 327.0 234 70.1
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 1.6e-87 326.6 246 68.3
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 2.8e-87 325.9 247 66.8
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 2.8e-87 325.9 236 70.3
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 2.8e-87 325.9 239 67.4
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 4.7e-87 325.1 246 67.5
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 8.1e-87 324.3 245 65.7
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 8.1e-87 324.3 220 74.1
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 8.1e-87 324.3 246 65.9
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 1.8e-86 323.2 280 61.1
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 3.1e-86 322.4 247 67.2
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 3.1e-86 322.4 247 67.2
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 4.0e-86 322.0 246 65.4
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 1.5e-85 320.1 246 65.4
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 1.5e-85 320.1 246 65.4
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 2.0e-85 319.7 240 65.0
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 4.4e-85 318.5 239 66.9
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 5.8e-85 318.2 240 65.8
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 7.5e-85 317.8 243 65.8
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 3.7e-84 315.5 252 63.5
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 4.9e-84 315.1 242 67.4
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 1.2e-82 310.5 271 59.4
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 1.6e-82 310.1 260 62.3
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 5.2e-78 295.0 242 62.0
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 1.5e-77 293.5 245 58.8
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 1.1e-75 287.3 278 54.3
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 5.4e-75 285.0 274 55.5
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 3.5e-74 282.3 230 63.5
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 4.3e-72 275.4 183 76.0
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 1.3e-68 263.8 240 60.0
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 3.5e-66 255.8 233 56.2
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 3.3e-64 249.2 176 72.7
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 1.4e-54 217.2 255 51.8
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 5.3e-54 215.3 227 52.0
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 9.0e-54 214.5 271 43.9
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 3.4e-53 212.6 256 46.5
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 1.3e-52 210.7 131 74.0
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 1.5e-48 197.2 128 71.1
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 6.2e-47 191.8 249 49.4
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 1.1e-46 191.0 245 45.3
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 4.6e-42 175.6 172 50.0
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 5.0e-36 155.6 121 62.0
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 5.5e-35 152.1 153 58.2
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 1.5e-29 134.0 125 58.4
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 3.4e-21 106.3 139 38.8
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 2.2e-20 103.6 109 57.8
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 8.0e-18 95.1 119 47.1
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 3.0e-09 66.6 54 50.0
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 3.0e-09 66.6 38 84.2
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 5.2e-09 65.9 36 77.8
Pp3c4_16200 Physcomitrium patens HOM05D006878 ORTHO05D008579 9.7e-08 61.6 133 38.3


User provided reference genes

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