Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 2.3e-81 305.4 148 100.0
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 1.8e-70 269.2 148 87.2
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 2.9e-68 261.9 148 83.1
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 1.9e-67 259.2 148 80.4
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 4.2e-67 258.1 148 83.8
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.5e-64 249.6 144 80.6
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 1.3e-63 246.5 148 79.1
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 4.1e-62 241.5 172 68.0
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 7.0e-62 240.7 148 77.7
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 2.0e-61 239.2 148 73.0
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 4.5e-61 238.0 172 66.9
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 5.9e-61 237.7 148 75.0
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 1.7e-60 236.1 148 73.0
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 1.7e-60 236.1 148 74.3
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 1.7e-60 236.1 148 75.0
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 1.7e-60 236.1 148 75.7
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 2.9e-60 235.3 148 73.0
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 3.8e-60 235.0 148 72.3
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 3.8e-60 235.0 148 75.0
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 3.8e-60 235.0 148 73.6
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 6.5e-60 234.2 148 73.6
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.1e-59 233.4 148 70.9
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.1e-59 233.4 148 70.9
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 1.9e-59 232.6 145 73.1
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 2.5e-59 232.3 148 73.6
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 4.2e-59 231.5 148 72.3
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 4.2e-59 231.5 148 74.3
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 2.1e-58 229.2 136 80.9
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 6.1e-58 227.6 148 72.3
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 6.1e-58 227.6 148 69.6
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 6.1e-58 227.6 154 73.4
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 6.1e-58 227.6 148 72.3
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 1.0e-57 226.9 148 70.3
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 1.0e-57 226.9 148 70.3
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 1.0e-57 226.9 147 70.7
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 2.3e-57 225.7 148 71.6
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 8.8e-57 223.8 148 74.3
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 1.2e-56 223.4 148 68.9
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 1.2e-56 223.4 146 69.9
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.5e-56 223.0 146 70.5
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 2.0e-56 222.6 149 71.8
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 2.0e-56 222.6 148 70.3
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 2.6e-56 222.2 149 70.5
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 3.3e-56 221.9 213 56.3
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 4.4e-56 221.5 168 66.1
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 5.7e-56 221.1 153 69.3
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 7.5e-56 220.7 148 74.3
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 1.3e-55 219.9 148 71.6
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 1.7e-55 219.5 148 70.3
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 1.7e-55 219.5 148 66.9
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 2.2e-55 219.2 148 72.3
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 2.8e-55 218.8 148 73.0
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 3.7e-55 218.4 145 71.7
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 8.2e-55 217.2 146 69.2
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 1.1e-54 216.9 149 67.8
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 1.1e-54 216.9 149 67.8
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 1.4e-54 216.5 148 71.6
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 1.4e-54 216.5 148 71.6
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 1.8e-54 216.1 148 68.2
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 2.4e-54 215.7 149 67.8
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 5.3e-54 214.5 146 69.2
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 5.3e-54 214.5 151 68.2
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 5.3e-54 214.5 146 66.4
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 5.3e-54 214.5 148 68.2
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 7.0e-54 214.2 148 66.9
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 7.0e-54 214.2 149 67.8
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 9.1e-54 213.8 148 67.6
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 9.1e-54 213.8 186 59.1
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 1.6e-53 213.0 148 66.2
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 2.7e-53 212.2 146 67.8
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 3.5e-53 211.8 148 68.9
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 3.5e-53 211.8 146 67.1
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 3.5e-53 211.8 146 65.8
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 5.9e-53 211.1 148 66.9
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 7.7e-53 210.7 148 66.9
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 1.7e-52 209.5 148 65.5
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 3.8e-52 208.4 149 65.8
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 6.5e-52 207.6 147 69.4
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 8.5e-52 207.2 148 66.9
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 8.5e-52 207.2 171 61.4
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 1.1e-51 206.8 149 64.4
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 3.2e-51 205.3 149 65.8
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 5.5e-51 204.5 165 61.2
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 1.4e-49 199.9 148 62.2
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 1.8e-49 199.5 134 71.6
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 6.8e-49 197.6 148 62.8
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 9.8e-48 193.7 124 71.8
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 1.7e-47 193.0 148 60.8
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 2.8e-47 192.2 131 67.2
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 2.4e-46 189.1 174 54.0
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 9.1e-46 187.2 144 59.7
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 1.7e-44 183.0 111 82.9
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 5.5e-43 177.9 120 70.0
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 4.7e-42 174.9 145 52.4
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 3.1e-38 162.2 100 78.0
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 1.0e-33 147.1 148 52.7
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 1.4e-33 146.7 117 52.1
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 9.8e-32 140.6 93 68.8
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 1.1e-30 137.1 104 65.4
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 3.1e-25 119.0 101 51.5
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.5e-24 116.7 82 67.1
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 6.0e-21 104.8 73 69.9
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 7.8e-21 104.4 66 71.2
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 1.0e-20 104.0 145 29.7
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.7e-20 103.2 65 72.3
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 8.6e-20 100.9 103 54.4
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 1.6e-18 96.7 123 48.8
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 2.6e-16 89.4 77 53.2
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 2.6e-16 89.4 151 33.1
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.9e-14 83.2 48 70.8
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 2.7e-13 79.3 143 28.0
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 8.6e-12 74.3 66 57.6
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 1.2e-08 63.9 66 40.9
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 7.6e-08 61.2 38 71.1
Medtr2g084355 Medicago truncatula HOM05D003237 ORTHO05D003631 2.2e-07 59.7 44 68.2
Eucgr.E01843 Eucalyptus grandis HOM05D007311 ORTHO05D009011 4.2e-06 55.5 47 46.8


User provided reference genes

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