Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.4e-229 799.3 398 100.0
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 5.2e-213 744.2 429 89.3
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 6.1e-153 544.7 426 68.5
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 1.8e-144 516.5 423 65.5
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 5.0e-139 498.4 423 63.4
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 8.5e-139 497.7 423 63.1
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 7.2e-138 494.6 423 62.4
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.2e-137 493.8 423 62.4
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 3.6e-129 465.7 441 56.5
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 3.4e-127 459.1 442 57.2
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 2.2e-126 456.4 406 59.9
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 4.8e-126 455.3 451 56.1
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 1.3e-123 447.2 424 58.3
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 7.2e-122 441.4 396 58.6
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 5.2e-120 435.3 423 56.5
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 8.8e-120 434.5 426 57.3
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 1.2e-119 434.1 435 54.9
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.7e-119 431.8 420 56.7
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 7.5e-119 431.4 405 58.0
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 2.2e-118 429.9 417 55.6
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 3.7e-118 429.1 420 56.7
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.3e-118 427.9 451 53.7
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 1.4e-117 427.2 424 56.1
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 1.4e-117 427.2 423 57.0
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.4e-117 427.2 420 56.0
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 3.1e-117 426.0 412 55.6
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 3.1e-117 426.0 417 54.7
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.6e-116 423.7 420 55.5
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 2.9e-115 419.5 342 62.3
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 2.9e-115 419.5 409 55.5
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 6.6e-115 418.3 433 53.3
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 1.5e-114 417.2 399 55.1
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 5.5e-114 415.2 415 55.9
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 7.2e-114 414.8 404 56.9
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 1.2e-113 414.1 407 55.5
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 2.8e-113 412.9 420 54.5
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 2.8e-113 412.9 414 54.6
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.6e-113 412.5 412 55.6
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 4.7e-113 412.1 405 55.6
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 6.1e-113 411.8 402 56.5
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 8.0e-113 411.4 423 54.4
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 1.0e-112 411.0 425 54.4
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.8e-112 410.2 407 55.5
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 4.0e-112 409.1 426 53.3
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.5e-111 407.1 438 52.7
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 2.0e-111 406.8 424 53.5
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 1.3e-110 404.1 422 53.1
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 1.1e-109 401.0 439 51.5
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.1e-109 401.0 420 53.6
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 1.4e-109 400.6 418 53.3
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 7.0e-109 398.3 426 51.2
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 3.5e-108 396.0 410 53.7
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 4.5e-108 395.6 436 51.8
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 7.8e-108 394.8 401 55.1
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 1.0e-107 394.4 402 54.2
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 1.7e-107 393.7 435 52.2
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 2.3e-107 393.3 431 51.7
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 2.3e-107 393.3 399 53.9
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 2.9e-107 392.9 416 52.2
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.6e-107 391.7 353 58.4
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 8.6e-107 391.3 406 54.2
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.6e-107 391.3 353 58.4
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 1.9e-106 390.2 436 50.2
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 1.2e-105 387.5 399 52.1
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 8.0e-105 384.8 395 53.9
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 1.0e-104 384.4 433 50.8
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 1.8e-104 383.6 397 52.6
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 2.3e-104 383.3 437 51.3
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 1.5e-103 380.6 393 52.7
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 2.0e-103 380.2 392 53.1
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 7.5e-103 378.3 409 50.9
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 9.8e-103 377.9 448 49.6
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 9.8e-103 377.9 410 51.7
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 2.2e-102 376.7 408 52.2
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 6.4e-102 375.2 396 51.3
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 6.4e-102 375.2 419 49.4
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 8.3e-102 374.8 387 52.5
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 1.4e-101 374.0 396 50.8
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 2.0e-100 370.2 396 52.0
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 4.6e-100 369.0 440 49.1
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 2.3e-99 366.7 387 51.4
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 5.0e-99 365.5 406 51.5
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 3.3e-98 362.8 400 50.5
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 7.3e-98 361.7 418 50.0
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 9.5e-98 361.3 399 50.1
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 1.6e-97 360.5 393 53.2
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 3.6e-97 359.4 419 50.1
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 6.2e-97 358.6 423 48.2
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 1.1e-96 357.8 336 57.1
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 6.8e-96 355.1 387 50.1
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 3.4e-95 352.8 431 48.5
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 2.9e-94 349.7 302 60.6
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 1.4e-93 347.4 423 48.5
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 4.3e-90 335.9 406 48.5
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 1.1e-85 321.2 439 44.2
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 7.8e-84 315.1 273 60.1
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 2.6e-79 300.1 418 42.3
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 7.6e-79 298.5 358 43.9
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 1.9e-74 283.9 387 44.2
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 1.1e-72 278.1 387 43.4
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 1.2e-71 274.6 357 45.7
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 2.0e-71 273.9 326 50.3
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 2.4e-69 266.9 341 46.0
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.9e-54 216.9 148 69.6
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 2.1e-52 210.7 322 37.3
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.9e-51 206.5 197 56.3
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 4.5e-47 193.0 339 40.4
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 5.3e-40 169.5 171 55.6
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.5e-30 136.0 153 53.6
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 5.1e-27 126.3 205 40.5
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 8.2e-25 119.0 126 53.2
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 9.1e-24 115.5 272 30.9
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 5.3e-16 89.7 90 53.3
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 6.5e-14 82.8 225 30.2
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.5e-13 81.6 126 44.4
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 9.4e-13 79.0 212 27.4
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 9.4e-13 79.0 212 27.4
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 7.0e-08 62.8 109 37.6


User provided reference genes

Program Settings