Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 2.6e-201 705.7 503 100.0
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 5.3e-178 628.2 514 91.8
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 5.5e-119 432.2 526 66.7
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 4.6e-105 386.0 442 63.1
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.4e-90 337.0 488 61.7
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 3.2e-90 336.7 524 58.8
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 3.2e-90 336.7 525 59.2
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 4.3e-87 326.2 529 48.8
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 5.8e-84 315.8 442 48.6
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 5.8e-84 315.8 524 49.0
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 7.3e-79 298.9 438 48.9
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 4.7e-78 296.2 477 48.0
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.4e-77 293.9 495 45.3
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.0e-77 293.1 474 50.4
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.2e-76 291.6 479 48.0
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.3e-75 288.1 539 43.4
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.3e-72 277.3 429 46.6
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 8.1e-70 268.9 526 43.7
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.3e-67 261.5 482 43.8
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.9e-67 260.4 479 45.7
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 4.2e-66 256.5 511 42.7
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 1.6e-65 254.6 439 43.1
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.0e-64 251.9 488 45.1
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 1.3e-64 251.5 468 44.4
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 1.3e-64 251.5 468 44.4
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 5.1e-64 249.6 459 45.8
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 9.6e-63 245.4 446 42.4
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 9.0e-61 238.8 466 39.5
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.4e-58 231.5 478 42.1
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.9e-58 231.1 419 46.8
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 3.2e-58 230.3 440 40.9
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 4.2e-58 229.9 437 39.6
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 7.1e-58 229.2 433 40.0
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 7.1e-58 229.2 433 40.0
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.6e-57 228.0 487 40.7
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.1e-57 227.6 510 40.2
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 2.7e-57 227.3 456 39.7
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 3.5e-57 226.9 442 37.8
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 6.0e-57 226.1 533 41.5
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 7.9e-57 225.7 442 41.0
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.3e-56 224.9 456 40.4
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 5.1e-56 223.0 488 36.3
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 6.7e-56 222.6 449 52.3
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 6.7e-56 222.6 439 40.1
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 6.7e-56 222.6 488 40.6
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.9e-55 221.1 538 39.4
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 2.5e-55 220.7 471 41.0
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 9.6e-55 218.8 445 38.2
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 2.6e-52 210.7 499 37.9
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 3.4e-52 210.3 430 38.1
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 7.6e-52 209.1 514 38.3
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.0e-51 208.8 458 41.9
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.9e-51 207.2 436 38.1
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 3.8e-51 206.8 490 48.6
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.9e-50 204.5 472 38.6
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 5.5e-50 203.0 430 38.1
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.7e-49 200.7 483 39.5
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 4.6e-49 199.9 489 38.7
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 4.6e-49 199.9 489 38.7
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 1.0e-48 198.7 554 44.4
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.8e-48 198.0 511 34.2
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 1.8e-48 198.0 439 37.4
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 2.3e-48 197.6 495 37.2
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 3.9e-48 196.8 507 49.9
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.9e-48 196.8 573 35.6
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.7e-48 196.1 364 42.0
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.7e-48 196.1 402 41.8
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.1e-47 195.3 567 36.7
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 5.7e-47 193.0 551 32.3
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 1.3e-46 191.8 510 35.5
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 2.8e-46 190.7 456 36.8
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 8.2e-46 189.1 523 34.4
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 3.1e-45 187.2 516 38.0
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 5.3e-45 186.4 518 45.9
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 2.6e-44 184.1 541 42.5
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 5.9e-44 183.0 152 82.9
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 7.7e-44 182.6 541 34.4
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 1.1e-42 178.7 510 31.4
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.2e-41 175.3 424 37.3
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 1.6e-41 174.9 503 31.4
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 2.7e-41 174.1 413 38.0
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.0e-40 172.2 496 33.1
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 1.4e-40 171.8 518 33.4
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.8e-38 164.1 455 36.3
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 3.7e-38 163.7 483 45.8
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 8.2e-38 162.5 448 35.9
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.8e-37 161.4 473 39.1
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.4e-37 161.0 525 43.4
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 6.9e-37 159.5 438 35.2
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 6.9e-37 159.5 481 41.2
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.5e-36 158.3 575 32.7
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.6e-36 157.5 501 30.9
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 7.7e-36 156.0 492 32.9
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 3.8e-35 153.7 581 31.7
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 8.5e-35 152.5 439 36.0
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.1e-34 152.1 511 43.4
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.9e-34 151.4 500 33.8
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.5e-34 151.0 440 36.1
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 3.2e-34 150.6 517 43.3
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 7.2e-34 149.4 467 45.2
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 9.4e-34 149.1 562 31.7
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 9.4e-34 149.1 163 54.6
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.2e-33 148.7 439 35.5
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.6e-33 148.3 560 30.4
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.1e-33 147.9 368 35.3
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.6e-33 147.1 479 31.7
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 4.7e-33 146.7 509 41.5
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 4.7e-33 146.7 508 35.0
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.1e-33 146.4 513 31.8
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 7.9e-33 146.0 464 42.0
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.0e-32 145.6 472 41.7
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.9e-32 143.7 468 43.2
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 1.1e-31 142.1 483 38.1
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.5e-31 141.7 548 34.5
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 2.0e-31 141.4 470 32.1
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 7.4e-31 139.4 475 39.4
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 7.4e-31 139.4 475 39.4
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.3e-30 138.7 458 33.6
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.4e-29 135.2 461 31.5
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.4e-29 135.2 508 32.9
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.8e-29 134.8 389 37.3
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 3.1e-29 134.0 435 34.3
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.7e-27 128.3 440 34.1
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.7e-27 128.3 329 41.3
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 2.2e-27 127.9 543 37.6
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 2.2e-27 127.9 447 32.2
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 5.5e-26 123.2 473 30.4
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 5.5e-26 123.2 154 52.6
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 7.2e-26 122.9 439 31.9
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 4.7e-25 120.2 478 30.3
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 3.0e-24 117.5 474 41.8
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 3.9e-24 117.1 528 30.3
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.0e-23 114.8 362 43.1
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 8.2e-22 109.4 357 31.1
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 4.1e-21 107.1 158 43.0
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 1.2e-20 105.5 156 47.4
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.6e-20 105.1 470 27.9
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 3.5e-20 104.0 163 47.2
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 4.5e-20 103.6 183 43.2
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.9e-18 98.2 157 39.5
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 5.5e-18 96.7 447 28.9
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 7.2e-18 96.3 174 42.5
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 9.4e-18 95.9 193 35.8
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.1e-17 94.7 503 35.4
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.7e-17 93.6 427 27.6
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 6.1e-17 93.2 499 28.5
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.4e-16 92.0 479 28.6
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 2.3e-16 91.3 425 30.4
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 4.0e-16 90.5 146 41.1
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 6.7e-16 89.7 192 35.9
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 1.2e-15 89.0 128 46.9
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 7.5e-15 86.3 424 28.5
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 2.2e-14 84.7 177 41.8
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.8e-13 81.6 439 28.9
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.1e-13 80.9 145 40.7
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 4.5e-12 77.0 425 28.0
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 2.2e-11 74.7 442 27.6
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 2.2e-11 74.7 107 43.9
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.9e-11 74.3 145 38.6
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 2.9e-11 74.3 143 40.6
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 6.5e-11 73.2 149 40.3
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 1.1e-10 72.4 436 36.2
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.5e-10 72.0 105 43.8
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.9e-10 71.6 151 39.7
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 2.1e-09 68.2 456 25.7
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 2.7e-09 67.8 127 40.9
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.7e-09 67.8 387 33.6
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 2.7e-09 67.8 445 26.7
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 1.4e-08 65.5 149 35.6
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 2.3e-08 64.7 88 51.1
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.0e-08 63.9 154 33.1
Pp3c20_3960 Physcomitrium patens HOM05D025130 ORTHO05D030134 2.0e-07 61.6 110 38.2
Pp3c20_4020 Physcomitrium patens HOM05D025130 ORTHO05D030134 2.0e-07 61.6 110 38.2
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.3e-06 58.9 84 50.0
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.3e-06 56.6 84 48.8
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 6.3e-06 56.6 46 65.2


User provided reference genes

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