Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 6.2e-68 260.8 142 100.0
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 2.5e-56 222.2 141 77.3
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 1.3e-49 199.9 142 69.7
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.0e-38 163.7 143 64.3
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 1.4e-38 163.3 143 65.7
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 3.0e-38 162.2 150 62.7
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 5.2e-38 161.4 144 62.5
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 8.8e-38 160.6 142 59.2
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 5.7e-37 157.9 150 62.7
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 7.4e-37 157.5 143 62.2
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 7.4e-37 157.5 144 63.9
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 4.8e-36 154.8 145 55.9
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 6.3e-36 154.5 145 55.9
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.1e-35 153.7 145 55.9
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.8e-35 152.9 151 54.3
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 5.3e-35 151.4 145 60.0
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 9.1e-35 150.6 151 57.6
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 3.5e-34 148.7 144 56.9
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 3.5e-34 148.7 144 54.2
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 3.5e-34 148.7 141 53.2
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.5e-34 148.7 138 55.1
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 3.5e-34 148.7 137 56.2
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.0e-33 147.1 141 53.9
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.7e-33 146.4 143 55.2
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 2.2e-33 146.0 143 55.2
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 2.2e-33 146.0 143 55.2
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 2.9e-33 145.6 151 56.3
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 2.9e-33 145.6 146 54.8
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 6.5e-33 144.4 142 54.2
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 8.5e-33 144.1 143 54.5
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 8.5e-33 144.1 137 54.7
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 8.5e-33 144.1 151 56.3
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 8.5e-33 144.1 138 60.9
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.1e-32 143.7 137 54.7
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.5e-32 143.3 143 55.2
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.9e-32 142.9 134 55.2
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 2.5e-32 142.5 137 54.0
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 9.4e-32 140.6 137 56.2
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.6e-31 139.8 145 57.2
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 2.7e-31 139.0 137 50.4
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 3.6e-31 138.7 145 53.8
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 3.6e-31 138.7 145 53.8
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 3.6e-31 138.7 139 53.2
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 6.1e-31 137.9 137 47.4
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 8.0e-31 137.5 183 48.1
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 1.0e-30 137.1 137 47.4
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.0e-30 137.1 137 50.4
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.4e-30 136.7 137 47.4
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 1.4e-30 136.7 137 49.6
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 2.3e-30 136.0 145 49.7
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 4.0e-30 135.2 144 54.9
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 4.0e-30 135.2 144 54.9
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 5.2e-30 134.8 142 52.8
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 5.2e-30 134.8 139 52.5
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 6.7e-30 134.4 137 50.4
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 1.2e-29 133.7 151 55.0
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 1.5e-29 133.3 142 50.0
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 2.0e-29 132.9 148 61.5
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.6e-29 132.5 143 49.7
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 5.7e-29 131.3 158 48.7
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 5.7e-29 131.3 144 50.7
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 7.5e-29 131.0 145 49.0
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 7.5e-29 131.0 144 49.3
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.7e-28 129.8 143 56.6
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.7e-28 129.8 139 48.9
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.8e-28 129.0 145 51.7
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 2.8e-28 129.0 142 49.3
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 2.8e-28 129.0 143 48.3
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 4.8e-28 128.3 139 51.1
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 4.8e-28 128.3 139 48.2
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 4.8e-28 128.3 139 59.7
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 6.3e-28 127.9 146 49.3
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 1.8e-27 126.3 139 48.9
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.4e-27 125.9 134 47.0
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.4e-27 125.9 143 46.9
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 4.1e-27 125.2 136 47.8
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 5.3e-27 124.8 143 49.0
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 9.1e-27 124.0 136 47.1
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 2.0e-26 122.9 136 46.3
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 3.5e-26 122.1 134 46.3
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 5.9e-26 121.3 135 45.9
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 5.9e-26 121.3 139 47.5
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 7.7e-26 120.9 136 46.3
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 7.7e-26 120.9 136 46.3
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 7.7e-26 120.9 139 47.5
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 7.7e-26 120.9 132 48.5
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 1.0e-25 120.6 136 45.6
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 1.3e-25 120.2 142 46.5
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 1.7e-25 119.8 142 45.8
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 3.8e-25 118.6 144 47.2
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 3.8e-25 118.6 136 50.0
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 6.5e-25 117.9 142 42.3
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 6.5e-25 117.9 142 42.3
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.1e-24 117.1 140 45.7
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 2.5e-24 115.9 103 57.3
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 3.2e-24 115.5 180 40.6
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 5.5e-24 114.8 149 44.3
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 5.5e-24 114.8 101 56.4
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.1e-23 112.8 144 45.1
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 2.7e-23 112.5 178 47.8
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 2.7e-23 112.5 230 36.1
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 3.6e-23 112.1 157 52.2
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 1.0e-22 110.5 138 44.9
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.4e-22 110.2 140 42.9
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 1.8e-22 109.8 144 44.4
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 1.8e-22 109.8 144 44.4
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 2.3e-22 109.4 144 44.4
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.3e-22 109.4 155 43.2
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 3.0e-22 109.0 108 52.8
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 4.0e-22 108.6 145 45.5
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 6.8e-22 107.8 141 48.9
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 6.8e-22 107.8 210 36.2
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.2e-21 107.1 146 43.8
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.5e-21 106.7 112 50.9
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 1.5e-21 106.7 103 51.5
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.0e-21 106.3 143 43.4
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 3.4e-21 105.5 142 41.5
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 3.4e-21 105.5 143 43.4
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 4.4e-21 105.1 142 53.5
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 4.4e-21 105.1 103 50.5
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 4.4e-21 105.1 200 37.5
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 5.7e-21 104.8 106 50.0
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 1.3e-20 103.6 253 32.4
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 1.7e-20 103.2 143 42.7
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 1.7e-20 103.2 143 42.7
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.7e-20 103.2 90 56.7
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.2e-20 102.8 143 42.7
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.8e-20 102.4 102 47.1
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 6.3e-20 101.3 150 40.0
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 8.3e-20 100.9 109 46.8
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 8.3e-20 100.9 109 46.8
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.4e-19 100.1 147 45.6
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.8e-19 99.8 109 48.6
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.8e-19 99.8 160 35.6
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 4.1e-19 98.6 89 55.1
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 1.2e-18 97.1 142 38.0
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 1.6e-18 96.7 149 40.3
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 2.0e-18 96.3 91 54.9
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 2.3e-17 92.8 94 50.0
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 1.5e-16 90.1 134 41.0
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 1.6e-15 86.7 145 36.6
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 2.8e-15 85.9 67 62.7
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.7e-13 78.2 59 62.7
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 2.2e-12 76.3 88 50.0
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 8.3e-12 74.3 61 52.5
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 1.1e-11 73.9 65 55.4
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 5.4e-11 71.6 80 47.5
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 7.0e-11 71.2 66 59.1
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 7.0e-11 71.2 63 55.6
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 1.6e-10 70.1 84 45.2
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 3.5e-10 68.9 94 37.2
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.5e-08 62.8 89 37.1
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 5.6e-08 61.6 56 48.2
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 5.6e-08 61.6 52 50.0
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.7e-07 58.5 75 48.0
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 4.7e-07 58.5 87 55.2
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 6.1e-07 58.2 44 61.4


User provided reference genes

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