Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 1.9e-261 905.2 439 100.0
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 8.5e-249 863.2 439 94.3
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 1.5e-245 852.4 438 93.4
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 2.6e-237 825.1 436 89.9
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.6e-237 825.1 436 90.1
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 5.3e-235 817.4 439 87.5
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 1.6e-234 815.8 451 86.9
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 4.5e-234 814.3 439 86.8
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 1.5e-232 809.3 441 87.8
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.9e-232 808.9 439 86.3
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 3.2e-232 808.1 434 87.1
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 9.4e-232 806.6 434 88.2
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.7e-231 805.1 434 87.8
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 2.3e-230 802.0 434 88.0
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 6.8e-230 800.4 434 87.8
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.0e-229 798.9 439 85.2
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 9.8e-229 796.6 437 86.3
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 2.8e-228 795.0 437 86.7
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.7e-228 794.7 432 86.3
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.7e-228 794.7 432 86.3
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.4e-227 792.7 437 85.1
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.8e-227 792.3 437 86.0
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 2.4e-227 792.0 439 84.1
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 4.1e-227 791.2 437 86.5
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 7.0e-227 790.4 437 85.8
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 7.0e-227 790.4 429 85.8
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 9.1e-227 790.0 433 86.4
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 1.2e-226 789.6 439 85.6
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 1.6e-226 789.3 439 85.6
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 4.5e-226 787.7 429 85.3
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 5.9e-226 787.3 437 85.4
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 1.3e-225 786.2 439 85.4
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.7e-225 785.8 429 85.1
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 3.8e-225 784.6 439 85.2
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 6.6e-225 783.9 439 83.1
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.6e-223 779.2 437 83.3
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 8.0e-223 776.9 439 83.1
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 8.0e-223 776.9 434 83.9
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 8.0e-223 776.9 439 83.4
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.8e-222 775.8 439 83.8
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.8e-222 775.8 439 83.4
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 2.3e-222 775.4 435 85.3
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 6.8e-222 773.9 432 85.4
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.5e-221 772.7 439 82.7
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 2.0e-221 772.3 439 82.2
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 5.7e-221 770.8 437 82.4
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 2.2e-220 768.8 439 82.2
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 3.7e-220 768.1 439 84.3
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.7e-220 768.1 433 83.6
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 2.0e-218 762.3 495 74.7
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 3.8e-217 758.1 437 81.7
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.5e-216 756.1 436 82.1
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.5e-216 756.1 436 81.4
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 1.5e-216 756.1 439 80.2
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 1.9e-216 755.7 439 81.5
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.5e-216 755.4 433 81.3
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.5e-216 755.4 428 83.9
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.2e-215 753.1 437 81.7
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 1.2e-215 753.1 436 81.9
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.2e-215 753.1 432 80.3
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 1.2e-215 753.1 431 82.4
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 2.8e-215 751.9 436 81.4
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 4.7e-215 751.1 437 81.2
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 8.0e-215 750.4 427 82.7
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 8.0e-215 750.4 435 80.5
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 8.0e-215 750.4 472 76.1
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.0e-214 750.0 437 81.0
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.4e-214 749.6 433 81.1
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.8e-214 749.2 437 81.7
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.8e-214 749.2 437 81.7
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.8e-214 749.2 437 81.7
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 2.3e-214 748.8 437 79.9
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 3.1e-214 748.4 427 82.9
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 5.2e-214 747.7 433 81.8
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 6.8e-214 747.3 439 81.3
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 8.9e-214 746.9 437 81.5
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.4e-211 738.8 439 78.8
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 3.2e-211 738.4 442 80.1
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.4e-211 737.6 445 78.7
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 7.0e-211 737.3 417 84.2
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 3.5e-210 734.9 439 78.8
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 5.0e-209 731.1 440 77.5
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.9e-208 729.2 508 70.7
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 6.8e-206 720.7 420 81.7
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 2.2e-204 715.7 412 82.3
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 8.3e-204 713.8 433 76.4
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 4.6e-202 708.0 523 68.5
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.5e-200 703.0 401 81.8
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 4.3e-200 701.4 433 75.5
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.6e-199 699.5 436 74.8
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.1e-199 699.1 427 78.5
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 5.2e-198 694.5 391 83.6
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 3.7e-196 688.3 407 79.1
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 1.4e-195 686.4 434 74.4
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 9.2e-195 683.7 439 73.6
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 5.6e-192 674.5 433 73.9
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 2.8e-191 672.2 441 71.7
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.4e-190 669.8 433 72.7
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 8.9e-190 667.2 437 72.8
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 4.4e-189 664.8 426 73.7
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 3.8e-188 661.8 439 70.6
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 8.4e-188 660.6 427 72.8
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 1.5e-184 649.8 340 90.3
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 4.7e-183 644.8 439 73.3
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.3e-180 636.7 439 66.5
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 6.4e-180 634.4 339 88.8
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.2e-178 630.2 427 70.5
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.7e-177 626.3 432 66.9
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.8e-175 619.0 438 66.4
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 3.1e-174 615.5 329 87.2
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.6e-170 603.2 341 83.0
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.8e-166 589.7 440 63.6
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 2.4e-166 589.3 354 79.7
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.4e-166 589.3 390 72.8
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.2e-163 578.9 443 62.3
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.3e-161 572.8 440 66.4
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.9e-161 572.0 443 61.2
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 2.5e-160 569.3 426 62.9
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.8e-159 565.1 439 61.7
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 2.5e-155 552.7 294 88.4
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 8.8e-145 517.7 337 72.7
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 7.4e-144 514.6 352 69.9
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 7.4e-144 514.6 432 58.6
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 2.9e-140 502.7 382 66.8
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.5e-128 463.8 432 52.5
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 5.9e-125 451.8 352 67.0
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 4.1e-110 402.5 236 81.4
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 4.2e-107 392.5 223 84.8
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 5.8e-96 355.5 228 74.1
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.3e-76 291.2 157 87.9
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 7.3e-75 285.4 192 70.3
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.6e-72 276.9 151 82.8
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.9e-67 260.8 197 67.0
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 7.3e-67 258.8 145 83.4
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.9e-63 246.9 134 87.3
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.5e-56 224.6 235 54.5
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.1e-49 201.8 112 82.1
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.3e-47 194.9 107 80.4
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 9.6e-43 178.7 137 65.7
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 9.3e-38 162.2 88 85.2
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.5e-35 154.8 93 78.5
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 3.1e-33 147.1 204 43.1
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 6.9e-33 146.0 165 49.1
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 5.9e-32 142.9 82 84.1
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.2e-24 118.6 246 35.0
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 6.5e-23 112.8 67 71.6
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.9e-22 111.3 87 64.4
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 5.5e-22 109.8 57 80.7
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 3.6e-21 107.1 72 63.9
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 1.5e-19 101.7 62 77.4
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 1.3e-15 88.6 121 43.8
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 5.5e-14 83.2 36 94.4
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 1.2e-13 82.0 38 89.5
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 3.3e-11 73.9 183 31.1
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 5.3e-09 66.6 47 68.1
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 1.7e-07 61.6 35 71.4
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 2.9e-07 60.8 265 24.5
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 6.5e-07 59.7 69 50.7
MD16G1085700 Malus domestica HOM05D000617 ORTHO05D000478 8.5e-07 59.3 213 24.4
Zm00001eb035260 Zea mays HOM05D002051 ORTHO05D002041 1.1e-06 58.9 259 23.6
Mapoly0073s0071 Marchantia polymorpha HOM05D002051 ORTHO05D002041 1.5e-06 58.5 321 22.4


User provided reference genes

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