Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 1.2e-83 313.2 167 100.0
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 4.9e-56 221.5 172 77.9
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 3.0e-45 185.7 169 67.5
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.7e-32 143.3 169 59.2
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 1.9e-31 139.8 165 56.4
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 9.4e-31 137.5 166 53.6
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 3.0e-29 132.5 164 51.8
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 3.0e-29 132.5 163 54.0
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 3.9e-29 132.1 165 51.5
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 2.0e-28 129.8 167 51.5
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 2.6e-28 129.4 164 51.8
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 3.3e-28 129.0 164 52.4
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 9.7e-28 127.5 169 51.5
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 2.8e-27 125.9 163 50.3
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 3.7e-27 125.6 164 51.8
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 3.7e-27 125.6 167 51.5
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 3.7e-27 125.6 167 51.5
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 4.8e-27 125.2 166 54.2
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 4.8e-27 125.2 163 51.5
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 6.3e-27 124.8 163 50.9
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 8.2e-27 124.4 166 50.0
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 8.2e-27 124.4 169 51.5
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 1.1e-26 124.0 168 50.6
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.4e-26 123.6 170 50.0
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 1.8e-26 123.2 166 50.6
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 2.4e-26 122.9 164 49.4
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 3.1e-26 122.5 167 50.9
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 5.3e-26 121.7 164 53.0
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 6.9e-26 121.3 163 49.1
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 9.1e-26 120.9 165 46.7
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 9.1e-26 120.9 161 47.8
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 1.2e-25 120.6 166 50.6
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.2e-25 120.6 171 50.3
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.2e-25 120.6 172 50.6
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.5e-25 120.2 168 51.2
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.5e-25 120.2 176 50.6
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 2.0e-25 119.8 167 50.3
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 4.5e-25 118.6 160 51.2
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 4.5e-25 118.6 167 47.3
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 1.0e-24 117.5 165 47.9
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.3e-24 117.1 162 50.0
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.3e-24 117.1 182 44.0
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.3e-24 117.1 171 50.9
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 1.7e-24 116.7 163 47.9
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 2.2e-24 116.3 163 49.1
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 2.9e-24 115.9 163 46.6
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 3.8e-24 115.5 155 51.6
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 3.8e-24 115.5 162 52.5
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 3.8e-24 115.5 172 43.6
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 5.0e-24 115.2 170 50.0
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 5.0e-24 115.2 158 51.3
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 6.5e-24 114.8 160 48.1
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 8.5e-24 114.4 163 49.1
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.5e-23 112.8 163 50.9
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 2.5e-23 112.8 167 49.7
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 3.2e-23 112.5 160 45.6
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 5.5e-23 111.7 162 44.4
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 9.4e-23 110.9 162 50.6
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 9.4e-23 110.9 165 47.3
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.2e-22 110.5 163 49.7
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 1.6e-22 110.2 170 45.9
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.6e-22 110.2 158 48.1
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.7e-22 109.4 164 45.7
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 3.6e-22 109.0 164 47.6
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 6.1e-22 108.2 162 46.3
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 6.1e-22 108.2 162 47.5
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 8.0e-22 107.8 164 45.7
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 1.0e-21 107.5 162 44.4
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.8e-21 106.7 160 45.6
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.8e-21 106.7 160 45.6
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 3.0e-21 105.9 165 45.5
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 3.9e-21 105.5 171 46.8
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 5.2e-21 105.1 158 47.5
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 1.1e-20 104.0 162 44.4
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 2.0e-20 103.2 173 41.6
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.3e-20 102.4 160 43.1
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 3.3e-20 102.4 162 47.5
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 4.4e-20 102.1 179 41.3
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 1.3e-19 100.5 168 43.5
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 1.3e-19 100.5 167 43.1
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.7e-19 100.1 162 42.6
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 2.2e-19 99.8 172 41.3
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 3.7e-19 99.0 164 42.7
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 1.1e-18 97.4 165 44.2
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 1.1e-18 97.4 167 46.1
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 1.1e-18 97.4 166 44.0
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.1e-18 97.4 183 38.8
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 1.4e-18 97.1 163 46.0
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.8e-18 96.7 164 43.9
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 2.4e-18 96.3 166 45.2
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 3.1e-18 95.9 166 42.2
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 3.1e-18 95.9 164 43.3
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 4.1e-18 95.5 163 45.4
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 7.0e-18 94.7 160 42.5
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 7.0e-18 94.7 160 42.5
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 7.0e-18 94.7 160 42.5
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.2e-17 94.0 161 42.9
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 1.6e-17 93.6 163 43.6
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.0e-17 93.2 160 42.5
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 2.6e-17 92.8 160 42.5
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 2.6e-17 92.8 160 42.5
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 2.6e-17 92.8 160 42.5
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 2.6e-17 92.8 160 42.5
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 3.5e-17 92.4 162 43.2
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 3.5e-17 92.4 158 44.3
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 5.9e-17 91.7 159 40.3
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 5.9e-17 91.7 159 40.3
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 5.9e-17 91.7 160 43.8
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 7.7e-17 91.3 162 42.6
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 7.7e-17 91.3 169 44.4
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.3e-16 90.5 159 41.5
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 1.3e-16 90.5 159 40.3
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 1.3e-16 90.5 159 40.3
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.7e-16 90.1 161 42.2
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 2.9e-16 89.4 159 40.3
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 5.0e-16 88.6 167 40.1
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 5.0e-16 88.6 160 41.2
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 8.5e-16 87.8 163 41.1
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 1.1e-15 87.4 159 40.9
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 6.1e-14 81.6 156 39.7
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 1.0e-13 80.9 167 36.5
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.4e-13 80.5 165 36.4
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.8e-13 80.1 156 38.5
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 4.0e-13 79.0 163 38.0
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 5.2e-13 78.6 159 38.4
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.2e-12 77.4 158 37.3
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 2.0e-12 76.6 156 38.5
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 3.3e-12 75.9 159 38.4
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 3.3e-12 75.9 159 38.4
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 5.7e-12 75.1 155 38.7
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 5.7e-12 75.1 155 38.7
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 5.7e-12 75.1 160 36.2
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 7.5e-12 74.7 165 35.8
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 3.7e-11 72.4 155 38.7
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 6.3e-11 71.6 159 37.1
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.1e-10 70.9 167 35.3
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 2.4e-10 69.7 154 35.7
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 3.1e-10 69.3 126 42.1
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 7.0e-10 68.2 147 36.1
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 2.0e-09 66.6 49 69.4
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.0e-08 64.3 160 31.9
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 1.7e-08 63.5 160 32.5
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 3.8e-08 62.4 157 31.8
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 3.2e-07 59.3 165 30.3
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 4.2e-07 58.9 45 60.0
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 5.5e-07 58.5 157 31.8
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 5.5e-07 58.5 169 30.2
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 1.2e-06 57.4 49 65.3
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 4.7e-06 55.5 61 44.3
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 6.1e-06 55.1 52 59.6


User provided reference genes

Program Settings