Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1258300 Malus domestica HOM05D006247 ORTHO05D007684 1.9e-200 702.2 334 100.0
RcHm_v2.0_Chr4g0402581 Rosa chinensis HOM05D006247 ORTHO05D007684 6.3e-127 458.0 278 77.0
FAN17G2058 Fragaria x ananassa HOM05D006247 ORTHO05D007684 7.7e-125 451.1 309 69.3
FAN07G1589 Fragaria x ananassa HOM05D006247 ORTHO05D007684 2.7e-122 442.6 278 74.8
Prupe.1G086300 Prunus persica HOM05D006247 ORTHO05D007684 1.7e-116 423.3 274 73.0
FvH4_4g08310 Fragaria vesca HOM05D006247 ORTHO05D007684 2.2e-111 406.4 251 75.3
Haze_22104 Corylus avellana HOM05D006247 ORTHO05D007684 4.1e-110 402.1 261 70.1
QL02p097643 Quercus lobata HOM05D006247 ORTHO05D007684 4.2e-107 392.1 272 64.7
Manes.14G152800 Manihot esculenta HOM05D006247 ORTHO05D007684 6.1e-106 388.3 276 63.4
Gorai.004G100200 Gossypium raimondii HOM05D006247 ORTHO05D007684 1.0e-105 387.5 266 66.9
Duzib168G0886 Durio zibethinus HOM05D006247 ORTHO05D007684 8.8e-105 384.4 275 63.6
Gohir.A08G084700 Gossypium hirsutum HOM05D006247 ORTHO05D007684 1.1e-104 384.0 266 66.2
Ca_21220_v3 Cicer arietinum L. HOM05D006247 ORTHO05D007684 2.0e-104 383.3 264 64.0
Gohir.D08G094300 Gossypium hirsutum HOM05D006247 ORTHO05D007684 3.3e-104 382.5 266 66.5
Potri.006G168900 Populus trichocarpa HOM05D006247 ORTHO05D007684 3.3e-104 382.5 275 63.6
CANSAT11G2703 Cannabis sativa HOM05D006247 ORTHO05D007684 5.7e-104 381.7 264 63.6
Glyma.17G063800 Glycine max HOM05D006247 ORTHO05D007684 5.7e-104 381.7 272 62.5
Thecc.09G172600 Theobroma cacao HOM05D006247 ORTHO05D007684 1.3e-103 380.6 266 65.0
Phvul.003G146300 Phaseolus vulgaris HOM05D006247 ORTHO05D007684 6.3e-103 378.3 272 62.9
Medtr4g128240 Medicago truncatula HOM05D006247 ORTHO05D007684 3.1e-102 375.9 264 63.6
Atru.chr7.645 Acer truncatum HOM05D006247 ORTHO05D007684 5.3e-102 375.2 273 63.7
arahy.Tifrunner.gnm1.ann1.M2FXAD Arachis hypogaea HOM05D006247 ORTHO05D007684 9.1e-102 374.4 274 60.6
Psat4g012560 Pisum sativum HOM05D006247 ORTHO05D007684 9.1e-102 374.4 266 62.8
FAN22G0611 Fragaria x ananassa HOM05D006247 ORTHO05D007684 1.6e-101 373.6 278 65.5
VMungo1215G1070 Vigna mungo HOM05D006247 ORTHO05D007684 1.6e-101 373.6 272 61.8
arahy.Tifrunner.gnm1.ann1.B1Q0FL Arachis hypogaea HOM05D006247 ORTHO05D007684 5.9e-101 371.7 274 60.2
Ciclev10007836m.g Citrus clementina HOM05D006247 ORTHO05D007684 1.0e-100 370.9 275 61.5
TWI34G1331 Tripterygium wilfordii HOM05D006247 ORTHO05D007684 1.7e-100 370.2 276 62.0
Eucgr.C02305 Eucalyptus grandis HOM05D006247 ORTHO05D007684 3.2e-99 365.9 277 62.1
CiPaw.07G192000 Carya illinoinensis HOM05D006247 ORTHO05D007684 7.2e-99 364.8 263 64.3
Solyc02g014520.4 Solanum lycopersicum HOM05D006247 ORTHO05D007684 2.7e-98 362.8 273 60.4
Peaxi162Scf00113g01818 Petunia axillaris HOM05D006247 ORTHO05D007684 3.6e-98 362.5 263 63.1
Actinidia04160 Actinidia chinensis HOM05D006247 ORTHO05D007684 3.0e-97 359.4 272 62.9
Sc18g0007480 Simmondsia chinensis HOM05D006247 ORTHO05D007684 4.0e-97 359.0 298 59.4
Nitab4.5_0000018g0080 Nicotiana tabacum HOM05D006247 ORTHO05D007684 5.2e-97 358.6 263 62.4
Lj4g0017814 Lotus japonicus HOM05D006247 ORTHO05D007684 6.8e-97 358.2 272 59.2
Sopen02g003860 Solanum pennellii HOM05D006247 ORTHO05D007684 8.8e-97 357.8 273 60.1
Migut.K00244 Erythranthe guttata HOM05D006247 ORTHO05D007684 1.5e-96 357.1 276 60.9
Oeu025222.1 Olea europaea HOM05D006247 ORTHO05D007684 7.5e-96 354.8 273 61.5
PGR102G2305 Punica granatum HOM05D006247 ORTHO05D007684 9.8e-96 354.4 300 54.3
vmacro13121 Vaccinium macrocarpon HOM05D006247 ORTHO05D007684 1.3e-95 354.0 265 62.6
Lalb_Chr12g0199361 Lupinus albus HOM05D006247 ORTHO05D007684 2.8e-95 352.8 273 61.5
EL10Ac4g10218 Beta vulgaris HOM05D006247 ORTHO05D007684 6.3e-95 351.7 269 62.5
EL10Ac4g10223 Beta vulgaris HOM05D006247 ORTHO05D007684 6.3e-95 351.7 269 62.5
CSS0031352 Camellia sinensis var. sinensis HOM05D006247 ORTHO05D007684 6.3e-95 351.7 275 59.6
Nitab4.5_0019045g0010 Nicotiana tabacum HOM05D006247 ORTHO05D007684 4.1e-94 349.0 263 61.2
EL10Ac8g18280 Beta vulgaris HOM05D006247 ORTHO05D007684 5.4e-94 348.6 285 59.3
ClCG11G012190 Citrullus lanatus HOM05D006247 ORTHO05D007684 1.6e-93 347.1 266 60.9
Sed0001652 Sechium edule HOM05D006247 ORTHO05D007684 4.5e-93 345.5 275 59.3
Hund09028 Selenicereus undatus HOM05D006247 ORTHO05D007684 5.9e-93 345.1 265 58.5
SalBow1G0102 Salvia bowleyana HOM05D006247 ORTHO05D007684 1.0e-92 344.4 273 57.9
Cc06_g13290 Coffea canephora HOM05D006247 ORTHO05D007684 1.7e-92 343.6 274 58.4
CsaV3_2G008340 Cucumis sativus L. HOM05D006247 ORTHO05D007684 6.5e-92 341.7 267 59.6
Ah.09g229830 Amaranthus hybridus HOM05D006247 ORTHO05D007684 1.1e-91 340.9 271 58.7
AT2G18850 Arabidopsis thaliana HOM05D006247 ORTHO05D007684 1.9e-91 340.1 273 57.9
ECA234G4502 Erigeron canadensis HOM05D006247 ORTHO05D007684 1.9e-91 340.1 275 57.1
TAR383G1025 Trochodendron aralioides HOM05D006247 ORTHO05D007684 3.2e-91 339.3 273 60.4
GSVIVG01029207001 Vitis vinifera HOM05D006247 ORTHO05D007684 5.5e-91 338.6 273 57.1
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 1.2e-90 337.4 275 56.7
MSTRG.10736 Avicennia marina HOM05D006247 ORTHO05D007684 4.7e-90 335.5 273 56.8
A07p01840 Brassica napus HOM05D006247 ORTHO05D007684 6.1e-90 335.1 267 56.9
BraA07t27984Z Brassica rapa HOM05D006247 ORTHO05D007684 4.0e-89 332.4 267 56.6
Carub.0003s3308 Capsella rubella HOM05D006247 ORTHO05D007684 5.2e-89 332.0 269 57.6
Aa31LG8G15940 Aethionema arabicum HOM05D006247 ORTHO05D007684 1.2e-88 330.9 277 56.7
HanXRQChr10g0308211 Helianthus annuus HOM05D006247 ORTHO05D007684 1.2e-88 330.9 277 54.2
THA.LOC104803499 Tarenaya hassleriana HOM05D006247 ORTHO05D007684 1.2e-88 330.9 274 57.7
AUR62040315 Chenopodium quinoa HOM05D006247 ORTHO05D007684 3.4e-88 329.3 266 57.5
BolC7t40784H Brassica oleracea HOM05D006247 ORTHO05D007684 1.7e-87 327.0 270 55.6
SGA_v2.0_scaffold12G06066 Striga asiatica HOM05D006247 ORTHO05D007684 1.7e-87 327.0 262 58.0
AL3G53100 Arabidopsis lyrata HOM05D006247 ORTHO05D007684 2.2e-87 326.6 268 57.1
BcaC06g36474 Brassica carinata HOM05D006247 ORTHO05D007684 6.3e-87 325.1 273 54.6
C07p03920 Brassica napus HOM05D006247 ORTHO05D007684 1.1e-86 324.3 270 54.8
Sp3g32310 Schrenkiella parvula HOM05D006247 ORTHO05D007684 5.4e-86 322.0 274 54.4
Nn2g12713 Nelumbo nucifera HOM05D006247 ORTHO05D007684 9.2e-86 321.2 267 57.7
Lsat_1_v5_gn_5_84660 Lactuca sativa HOM05D006247 ORTHO05D007684 1.6e-85 320.5 274 54.4
AUR62033213 Chenopodium quinoa HOM05D006247 ORTHO05D007684 2.7e-85 319.7 279 54.8
PSO170G0820 Papaver somniferum HOM05D006247 ORTHO05D007684 2.7e-85 319.7 259 59.1
Aqoxy7G02323 Aquilegia oxysepala HOM05D006247 ORTHO05D007684 7.7e-85 318.2 270 55.9
BcaB03g16669 Brassica carinata HOM05D006247 ORTHO05D007684 6.6e-84 315.1 260 56.5
PSO017G3786 Papaver somniferum HOM05D006247 ORTHO05D007684 8.6e-84 314.7 258 57.8
CARHR109410 Cardamine hirsuta HOM05D006247 ORTHO05D007684 1.5e-83 313.9 269 55.0
MBI14_g17363_MAGBIO Magnolia biondii HOM05D006247 ORTHO05D007684 1.6e-82 310.5 265 54.7
COL.COLO4_07069 Corchorus olitorius HOM05D006247 ORTHO05D007684 2.1e-82 310.1 266 54.9
Rhsim01G0005100 Rhododendron simsii HOM05D006247 ORTHO05D007684 2.1e-82 310.1 251 57.8
Thhalv10001950m.g Eutrema salsugineum HOM05D006247 ORTHO05D007684 5.2e-81 305.4 299 50.2
TPR.G5375 Trifolium pratense HOM05D006247 ORTHO05D007684 6.8e-81 305.1 192 67.7
AUR62021296 Chenopodium quinoa HOM05D006247 ORTHO05D007684 7.5e-80 301.6 245 57.1
Dinv42726 Davidia involucrata HOM05D006247 ORTHO05D007684 8.3e-79 298.1 191 68.1
Dinv43375 Davidia involucrata HOM05D006247 ORTHO05D007684 8.3e-79 298.1 191 68.1
Sabra06G0130300 Salix brachista HOM05D006247 ORTHO05D007684 2.3e-76 290.0 309 49.2
HPP92_015229 Vanilla planifolia HOM05D006247 ORTHO05D007684 8.6e-76 288.1 271 50.9
Rhsim01G0005000 Rhododendron simsii HOM05D006247 ORTHO05D007684 1.2e-74 284.3 272 53.3
MELO3C004030.2 Cucumis melo HOM05D006247 ORTHO05D007684 8.0e-74 281.6 216 58.3
ATR0580G346 Amborella trichopoda HOM05D006247 ORTHO05D007684 6.6e-68 261.9 179 65.4
TPR.G20696 Trifolium pratense HOM05D006247 ORTHO05D007684 6.8e-65 251.9 194 57.7
Lj9A685T58 Lonicera japonica HOM05D006247 ORTHO05D007684 4.6e-61 239.2 197 58.9
Zm00001eb414720 Zea mays HOM05D006247 ORTHO05D007684 2.1e-58 230.3 184 55.4
Hma1.2p1_3184F.1_g333740 Hydrangea macrophylla HOM05D006247 ORTHO05D007684 1.8e-57 227.3 195 57.4
Os08g0244400 Oryza sativa ssp. japonica HOM05D006247 ORTHO05D007684 3.2e-54 216.5 183 56.3
AagrBONN_evm.TU.Sc2ySwM_117.653 Anthoceros agrestis HOM05D006247 ORTHO05D007684 4.9e-47 192.6 279 39.4
CDE05G3038 Ceratophyllum demersum HOM05D006247 ORTHO05D007684 2.7e-45 186.8 274 40.1
Eucgr.L03644 Eucalyptus grandis HOM05D006247 ORTHO05D007684 1.4e-41 174.5 220 44.1
Mapoly0146s0042 Marchantia polymorpha HOM05D006247 ORTHO05D007684 2.6e-40 170.2 269 35.3
SHI12522 Sapria himalayana HOM05D006247 ORTHO05D007684 2.8e-26 123.6 76 68.4
Cre13.g573000 Chlamydomonas reinhardtii HOM05D006247 ORTHO05D007684 4.5e-24 116.3 121 40.5
Cpa.g.sc95.54 Carica papaya HOM05D006247 ORTHO05D007684 6.0e-21 105.9 118 44.1
Cpa.g.sc95.55 Carica papaya HOM05D006247 ORTHO05D007684 1.9e-19 100.9 71 62.0
MCO11G807 Micromonas commoda HOM05D006247 ORTHO05D007684 9.0e-17 92.0 140 37.9
CBR_g35033 Chara braunii HOM05D006247 ORTHO05D007684 2.6e-16 90.5 79 49.4
FAN12G4057 Fragaria x ananassa HOM05D006247 ORTHO05D007684 1.3e-15 88.2 49 73.5
Zm00001eb189210 Zea mays HOM05D004224 ORTHO05D006437 1.9e-14 84.3 125 35.2
CBR_g47154 Chara braunii HOM05D006247 ORTHO05D007684 2.5e-14 84.0 79 39.2
Os02g0725200 Oryza sativa ssp. japonica HOM05D004224 ORTHO05D006437 6.1e-13 79.3 125 33.6
TAR383G0048 Trochodendron aralioides HOM05D006247 ORTHO05D007684 1.1e-11 75.1 103 40.8
CARHR109420 Cardamine hirsuta HOM05D006247 ORTHO05D007684 1.9e-11 74.3 67 52.2
SEGI_19089 Sequoiadendron giganteum HOM05D006247 ORTHO05D007684 6.3e-10 69.3 115 40.0
SMO172G0057 Selaginella moellendorffii HOM05D006247 ORTHO05D007684 5.3e-09 66.2 116 32.8
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 1.5e-08 64.7 133 25.6
Pp3c4_19510 Physcomitrium patens HOM05D004224 ORTHO05D006437 5.9e-08 62.8 133 30.1
SMO367G0558 Selaginella moellendorffii HOM05D005456 ORTHO05D006805 7.7e-08 62.4 197 27.9


User provided reference genes

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